Wall clock time and date at job start Tue Mar 31 2020 19:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47285 * 120.00269 * 2 1 3 5 5 C 1.52995 * 109.47235 * 64.99571 * 4 2 1 6 6 H 1.09003 * 109.47137 * 305.00460 * 5 4 2 7 7 C 1.52990 * 109.47220 * 184.99872 * 5 4 2 8 8 N 1.46505 * 109.47355 * 185.00350 * 7 5 4 9 9 C 1.36933 * 120.00236 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99883 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99738 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00119 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47368 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47343 * 120.00319 * 13 11 9 16 16 H 1.48509 * 109.47050 * 240.00171 * 13 11 9 17 17 N 1.46504 * 109.46630 * 65.00176 * 5 4 2 18 18 C 1.34777 * 120.00135 * 274.99662 * 17 5 4 19 19 O 1.21284 * 119.99836 * 359.97438 * 18 17 5 20 20 C 1.50694 * 120.00094 * 180.02562 * 18 17 5 21 21 H 1.09003 * 109.47361 * 304.99803 * 20 18 17 22 22 C 1.52995 * 109.47479 * 65.00175 * 20 18 17 23 23 O 1.42900 * 109.47300 * 185.00253 * 20 18 17 24 24 C 1.35676 * 117.00228 * 150.00235 * 23 20 18 25 25 C 1.38922 * 119.68298 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11001 * 179.97438 * 25 24 23 27 27 C 1.38829 * 118.48477 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28775 * 0.25231 * 27 26 25 29 29 N 1.31968 * 120.83596 * 359.45492 * 28 27 26 30 30 H 1.08994 * 109.47079 * 59.99748 * 1 2 3 31 31 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46804 * 299.99494 * 1 2 3 33 33 H 1.08994 * 109.46629 * 240.00266 * 2 1 3 34 34 H 1.08997 * 109.47101 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47225 * 300.00288 * 3 2 1 36 36 H 1.09007 * 109.47360 * 59.99990 * 3 2 1 37 37 H 1.09000 * 109.46731 * 305.00082 * 4 2 1 38 38 H 1.08993 * 109.47133 * 185.00062 * 4 2 1 39 39 H 1.09004 * 109.47446 * 305.00506 * 7 5 4 40 40 H 1.09004 * 109.47437 * 65.00306 * 7 5 4 41 41 H 0.96997 * 119.99974 * 0.02562 * 8 7 5 42 42 H 0.97000 * 119.99843 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00225 * 95.00558 * 17 5 4 44 44 H 1.09009 * 109.47017 * 300.00041 * 22 20 18 45 45 H 1.09008 * 109.47563 * 59.99651 * 22 20 18 46 46 H 1.08998 * 109.47571 * 180.02562 * 22 20 18 47 47 H 1.08002 * 120.44550 * 359.97438 * 25 24 23 48 48 H 1.08002 * 120.75560 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35145 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.57882 * 179.72181 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2706 1.0527 7 6 2.0355 -2.8888 2.4917 8 7 1.7570 -4.3234 2.3873 9 6 2.0351 -5.1532 3.4405 10 1 2.4601 -4.7502 4.3480 11 6 1.7708 -6.5124 3.3418 12 7 1.2524 -7.0034 2.2361 13 14 2.1495 -7.6442 4.7788 14 1 2.7210 -6.8510 5.8965 15 1 0.8993 -8.3059 5.2306 16 1 3.1289 -8.6757 4.3517 17 7 2.3148 -2.8420 0.0625 18 6 1.7815 -2.7778 -1.1736 19 8 0.7388 -2.1852 -1.3542 20 6 2.4801 -3.4433 -2.3311 21 1 3.5050 -3.0777 -2.3959 22 6 2.4916 -4.9582 -2.1173 23 8 1.7884 -3.1387 -3.5439 24 6 2.5294 -3.0862 -4.6792 25 6 1.9137 -2.7941 -5.8898 26 6 2.6809 -2.7430 -7.0403 27 6 4.0437 -2.9876 -6.9387 28 6 4.5875 -3.2775 -5.7035 29 7 3.8309 -3.3135 -4.6228 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 3.0998 -2.7375 2.6719 40 1 1.4634 -2.4669 3.3181 41 1 1.3757 -4.6854 1.5722 42 1 1.0681 -7.9532 2.1671 43 1 3.1484 -3.3164 0.2069 44 1 3.0193 -5.1906 -1.1922 45 1 1.4667 -5.3239 -2.0526 46 1 2.9973 -5.4395 -2.9543 47 1 0.8504 -2.6094 -5.9324 48 1 2.2298 -2.5179 -7.9954 49 1 4.6708 -2.9559 -7.8174 50 1 5.6464 -3.4730 -5.6198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:13 Heat of formation + Delta-G solvation = -54.137233 kcal Electronic energy + Delta-G solvation = -29962.326716 eV Core-core repulsion = 25989.358510 eV Total energy + Delta-G solvation = -3972.968206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86620 -41.04120 -39.08884 -37.76935 -36.46158 -35.12791 -33.62866 -33.36634 -32.56002 -31.05640 -30.28683 -27.97449 -27.18355 -26.03648 -24.77246 -24.47872 -23.90077 -22.23713 -21.34354 -20.82964 -19.54205 -19.29674 -18.43539 -17.59464 -17.13750 -16.93890 -16.76478 -16.68389 -16.23330 -15.65129 -15.49752 -15.39262 -15.20187 -14.86311 -14.52608 -14.46478 -14.32788 -14.12217 -13.96626 -13.65581 -13.39926 -13.23418 -13.03496 -12.96534 -12.90618 -12.82209 -12.75527 -12.54406 -12.35323 -12.18376 -12.04563 -11.88201 -11.64663 -11.40463 -11.25937 -10.97456 -10.89730 -10.65355 -10.53349 -9.93669 -9.47632 -8.98771 -7.92347 -5.21477 0.21906 0.34545 1.48586 1.49534 1.51820 1.59142 1.61457 2.53307 2.58109 2.84808 3.30149 3.41945 3.56718 3.72728 3.88988 3.94782 4.00846 4.06594 4.07804 4.13169 4.24550 4.24697 4.35761 4.38702 4.41480 4.63975 4.65423 4.67506 4.79974 4.82165 4.86665 4.88917 4.91758 4.99162 5.07191 5.08318 5.09694 5.15233 5.22780 5.29837 5.37928 5.52624 5.52968 5.55620 5.61432 5.65400 6.20358 6.28149 6.55680 6.88736 7.23851 7.35980 8.09425 8.33492 9.30487 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.003415 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.717489 B = 8197.727707 C =10351.082133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.113 4.113 5 C 0.147 3.853 6 H 0.066 0.934 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.240 4.240 10 H 0.078 0.922 11 C -0.072 4.072 12 N -0.965 5.965 13 Si 0.970 3.030 14 H -0.265 1.265 15 H -0.299 1.299 16 H -0.294 1.294 17 N -0.698 5.698 18 C 0.513 3.487 19 O -0.545 6.545 20 C 0.086 3.914 21 H 0.120 0.880 22 C -0.151 4.151 23 O -0.300 6.300 24 C 0.292 3.708 25 C -0.206 4.206 26 C -0.036 4.036 27 C -0.204 4.204 28 C 0.125 3.875 29 N -0.562 5.562 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.408 0.592 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.142 0.858 48 H 0.174 0.826 49 H 0.173 0.827 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 13.520 -17.437 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.197 4.197 4 C -0.152 4.152 5 C 0.043 3.957 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.372 4.372 10 H 0.096 0.904 11 C -0.265 4.265 12 N -0.616 5.616 13 Si 0.800 3.200 14 H -0.190 1.190 15 H -0.227 1.227 16 H -0.221 1.221 17 N -0.351 5.351 18 C 0.299 3.701 19 O -0.423 6.423 20 C 0.026 3.974 21 H 0.137 0.863 22 C -0.209 4.209 23 O -0.207 6.207 24 C 0.114 3.886 25 C -0.227 4.227 26 C -0.061 4.061 27 C -0.224 4.224 28 C -0.030 4.030 29 N -0.286 5.286 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.160 0.840 48 H 0.192 0.808 49 H 0.190 0.810 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.545 13.790 -16.498 22.787 hybrid contribution -0.268 -1.340 -0.031 1.367 sum 7.276 12.450 -16.529 21.935 Atomic orbital electron populations 1.21755 0.95760 1.01373 1.00114 1.21070 0.95873 0.96278 0.97665 1.21801 1.00905 0.95174 1.01827 1.21963 1.01860 0.92518 0.98840 1.21226 0.97105 0.92649 0.84739 0.91594 1.21115 0.98645 0.83894 0.94492 1.42526 1.76506 1.02850 1.16662 1.19639 1.33255 0.89401 0.94919 0.90376 1.25505 1.02632 0.98564 0.99792 1.69830 1.51353 1.12460 1.27964 0.85124 0.76662 0.78943 0.79298 1.18974 1.22660 1.22098 1.45774 1.27352 1.55481 1.06453 1.20384 0.85463 0.79878 0.84401 1.90694 1.23631 1.43351 1.84616 1.21960 0.97445 0.96539 0.81499 0.86264 1.22023 1.02742 0.92345 1.03754 1.86344 1.35683 1.84718 1.13945 1.20230 0.88210 0.93275 0.86868 1.21343 1.02750 1.07978 0.90586 1.21858 0.93779 0.92267 0.98245 1.22406 0.96233 1.03710 1.00003 1.23042 1.00409 0.92421 0.87101 1.67235 1.05043 1.20771 1.35573 0.94230 0.93376 0.92833 0.92964 0.92331 0.93189 0.91820 0.89714 0.90377 0.94140 0.94472 0.79302 0.94221 0.75596 0.89895 0.93217 0.90427 0.84015 0.80830 0.80991 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 8.04 71.98 0.58 -3.40 16 2 C -0.09 -2.48 2.38 -10.79 -0.03 -2.51 16 3 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 4 C -0.11 -2.97 4.36 30.59 0.13 -2.84 16 5 C 0.15 4.85 2.33 44.99 0.10 4.96 16 6 H 0.07 2.55 5.92 -2.39 -0.01 2.54 16 7 C 0.15 5.43 5.82 86.38 0.50 5.93 16 8 N -0.74 -36.15 5.43 -343.44 -1.87 -38.01 16 9 C -0.24 -12.95 9.99 84.03 0.84 -12.11 16 10 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 12 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 13 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 N -0.70 -22.44 4.43 -442.55 -1.96 -24.40 16 18 C 0.51 17.75 5.73 87.66 0.50 18.25 16 19 O -0.55 -21.74 11.47 15.95 0.18 -21.56 16 20 C 0.09 2.65 2.90 29.84 0.09 2.74 16 21 H 0.12 3.35 6.98 -2.39 -0.02 3.34 16 22 C -0.15 -4.72 9.49 71.98 0.68 -4.03 16 23 O -0.30 -9.91 9.30 -70.95 -0.66 -10.57 16 24 C 0.29 8.05 7.45 84.80 0.63 8.68 16 25 C -0.21 -4.48 10.04 22.47 0.23 -4.25 16 26 C -0.04 -0.51 10.17 22.45 0.23 -0.28 16 27 C -0.20 -2.51 10.11 22.37 0.23 -2.28 16 28 C 0.13 2.09 11.18 84.63 0.95 3.04 16 29 N -0.56 -13.81 8.65 -308.96 -2.67 -16.48 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.73 4.76 -2.39 -0.01 1.71 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.68 5.19 -2.39 -0.01 1.67 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.37 19.87 7.33 -92.71 -0.68 19.19 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.41 12.35 8.39 -92.71 -0.78 11.57 16 44 H 0.08 2.61 7.93 -2.38 -0.02 2.59 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 48 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 49 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 50 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -71.03 402.31 1.61 -69.42 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -0.51 Total: 46.13 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.79 Total: 5.89 kcal Atomic # 7 Polarization: -130.65 SS G_CDS: -6.22 Total: -136.86 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.48 Total: -32.13 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.03 1.61 -69.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.280 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds