Wall clock time and date at job start Tue Mar 31 2020 19:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46653 * 2 1 4 4 C 1.46503 * 120.00132 * 269.99579 * 3 2 1 5 5 C 1.50697 * 109.47362 * 270.00896 * 4 3 2 6 6 H 1.08007 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00500 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00639 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99858 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46957 * 89.99724 * 9 7 5 11 11 H 1.48495 * 109.47122 * 209.99933 * 9 7 5 12 12 H 1.48507 * 109.46635 * 329.99913 * 9 7 5 13 13 C 1.34772 * 120.00072 * 90.00407 * 3 2 1 14 14 O 1.21282 * 120.00138 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00213 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47216 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99869 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47017 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.47398 * 64.99849 * 18 17 16 20 20 C 1.53002 * 109.47233 * 185.00023 * 18 17 16 21 21 N 1.46499 * 109.46840 * 304.99523 * 18 17 16 22 22 C 1.34778 * 119.99771 * 155.00060 * 21 18 17 23 23 O 1.21612 * 120.00049 * 0.02562 * 22 21 18 24 24 C 1.43203 * 119.99980 * 180.02562 * 22 21 18 25 25 C 9.38397 * 122.66393 * 50.28502 * 2 1 3 26 26 C 9.36086 * 140.86345 * 269.36329 * 3 1 2 27 27 C 1.53002 * 117.49593 * 130.08056 * 26 25 24 28 28 C 1.52995 * 117.50044 * 61.45712 * 26 25 24 29 29 H 1.08997 * 109.47440 * 300.00172 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00662 * 1 2 3 31 31 H 1.09008 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46977 * 239.99649 * 2 1 3 33 33 H 1.08999 * 109.46685 * 119.99727 * 2 1 3 34 34 H 1.08999 * 109.46678 * 30.00011 * 4 3 2 35 35 H 1.08993 * 109.47661 * 150.00484 * 4 3 2 36 36 H 0.97001 * 120.00586 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.46867 * 60.00585 * 15 13 3 38 38 H 1.08999 * 109.47036 * 300.00683 * 15 13 3 39 39 H 1.00898 * 110.99537 * 56.04722 * 16 15 13 40 40 H 1.08991 * 109.47118 * 59.99842 * 17 16 15 41 41 H 1.09002 * 109.47096 * 299.99723 * 17 16 15 42 42 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 43 43 H 1.09000 * 109.46986 * 299.99797 * 20 18 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 20 18 17 45 45 H 0.96998 * 120.00630 * 335.00662 * 21 18 17 46 46 H 1.08998 * 115.55173 * 275.78619 * 26 25 24 47 47 H 1.08995 * 117.50264 * 359.97438 * 27 26 25 48 48 H 1.09006 * 117.49408 * 145.01958 * 27 26 25 49 49 H 1.08999 * 117.50227 * 214.97693 * 28 26 25 50 50 H 1.09001 * 117.49611 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 5.3912 2.1833 -3.2574 9 14 3.0124 3.4340 -3.9300 10 1 3.1147 4.8545 -3.5092 11 1 3.4059 3.3107 -5.3565 12 1 1.6129 2.9670 -3.7603 13 6 2.2429 2.0165 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3091 2.2065 3.5888 17 6 2.0758 1.5462 4.8802 18 6 2.4164 2.5130 6.0161 19 1 1.7262 3.3564 5.9947 20 6 2.2934 1.7873 7.3575 21 7 3.7879 2.9998 5.8483 22 6 4.1514 4.1854 6.3762 23 8 3.3411 4.8508 6.9923 24 6 5.4919 4.6615 6.2118 25 6 6.5947 5.0478 6.0769 26 6 7.9731 5.5360 5.9079 27 6 8.2304 6.5542 4.7953 28 6 8.7221 5.1134 4.6426 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7171 2.5732 -4.0837 37 1 2.6214 0.4188 2.5302 38 1 0.9433 1.0124 2.5299 39 1 1.7840 3.0654 3.5214 40 1 2.7069 0.6608 4.9547 41 1 1.0285 1.2534 4.9546 42 1 2.5355 2.4761 8.1668 43 1 1.2730 1.4251 7.4824 44 1 2.9835 0.9438 7.3789 45 1 4.4344 2.4690 5.3572 46 1 8.5522 5.6360 6.8259 47 1 7.3793 6.8622 4.1881 48 1 8.9791 7.3244 4.9813 49 1 9.7941 4.9357 4.7280 50 1 8.1941 4.4742 3.9350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715927892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:30 Heat of formation + Delta-G solvation = 9.781489 kcal Electronic energy + Delta-G solvation = -28312.134314 eV Core-core repulsion = 24341.937832 eV Total energy + Delta-G solvation = -3970.196482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.91746 -39.23111 -37.78815 -36.93262 -35.42107 -34.29550 -32.94030 -32.68531 -31.00010 -30.37040 -28.61567 -26.90276 -25.25177 -24.13042 -23.01665 -22.65757 -22.45396 -21.89126 -20.97118 -18.99665 -18.34535 -17.09377 -16.84969 -16.81484 -16.42810 -15.88938 -15.37715 -15.19337 -15.11991 -14.62597 -14.33848 -14.22931 -14.10857 -13.60782 -13.50377 -13.01433 -12.87296 -12.66705 -12.63091 -12.37389 -12.32488 -12.27198 -11.98390 -11.92374 -11.77473 -11.71394 -11.45290 -11.42708 -11.13347 -10.98701 -10.73317 -10.50997 -10.42045 -10.26316 -10.16599 -9.86117 -9.54702 -9.22290 -9.02692 -8.59328 -8.46723 -7.73350 -6.09121 -4.07683 1.47556 2.06232 2.94382 3.28274 3.32184 3.34214 3.36365 3.43268 3.58589 3.74420 4.00026 4.21244 4.39075 4.51617 4.56463 4.68722 4.78033 4.89244 4.97485 5.08574 5.17122 5.21591 5.24907 5.26557 5.34636 5.38817 5.39102 5.43875 5.49822 5.55135 5.57844 5.66927 5.75644 5.79881 5.85831 5.90845 5.93972 6.10690 6.31122 6.34258 6.63128 6.82092 6.95615 7.13166 7.27715 7.34398 7.39373 7.60904 8.06943 8.24560 8.46682 8.92832 8.99295 9.51361 11.04297 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003077 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.949736 B = 9097.687846 C =11987.103262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.043 3.957 16 N -0.671 5.671 17 C 0.049 3.951 18 C 0.146 3.854 19 H 0.090 0.910 20 C -0.162 4.162 21 N -0.695 5.695 22 C 0.639 3.361 23 O -0.533 6.533 24 C -0.219 4.219 25 C -0.051 4.051 26 C -0.069 4.069 27 C -0.159 4.159 28 C -0.159 4.159 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.352 0.648 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.410 0.590 46 H 0.134 0.866 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.108 0.892 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -3.343 19.023 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.292 3.708 14 O -0.402 6.402 15 C -0.089 4.089 16 N -0.304 5.304 17 C -0.080 4.080 18 C 0.041 3.959 19 H 0.108 0.892 20 C -0.221 4.221 21 N -0.346 5.346 22 C 0.426 3.574 23 O -0.412 6.412 24 C -0.221 4.221 25 C -0.054 4.054 26 C -0.086 4.086 27 C -0.196 4.196 28 C -0.195 4.195 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.172 0.828 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.246 0.754 46 H 0.152 0.848 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.126 0.874 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.483 -2.379 19.265 19.570 hybrid contribution -1.089 0.129 -0.922 1.433 sum -3.572 -2.250 18.343 18.822 Atomic orbital electron populations 1.22238 0.96860 1.01548 1.02143 1.21429 0.93286 0.83960 1.03090 1.47935 1.64402 1.13362 1.07007 1.19623 0.97293 0.93327 0.80064 1.21327 0.95339 1.32877 1.07049 0.90774 1.24849 0.94979 0.95785 0.97362 1.69893 1.15117 1.45053 1.23550 0.86863 0.81450 0.81657 0.79779 1.19917 1.21074 1.19132 1.20201 0.78653 0.87115 0.84876 1.90688 1.44581 1.18041 1.86891 1.21886 1.00032 0.96706 0.90302 1.60055 1.63329 1.07150 0.99892 1.22320 1.00056 0.97113 0.88553 1.21009 0.83588 0.97161 0.94166 0.89186 1.22157 1.02360 1.00765 0.96846 1.45674 1.13213 1.20290 1.55398 1.14589 0.83017 0.80922 0.78868 1.90831 1.51569 1.57028 1.41724 1.20653 0.93488 1.03695 1.04312 1.21438 0.92353 0.96339 0.95243 1.18914 0.87959 1.06001 0.95751 1.23122 1.03876 0.92971 0.99664 1.23151 1.00644 0.98235 0.97511 0.93153 0.92212 0.91980 0.89699 0.91500 0.95352 0.94698 0.92583 0.88485 0.92853 0.82787 0.90085 0.93453 0.91648 0.91350 0.92097 0.75443 0.84805 0.87868 0.87424 0.87374 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.51 9.90 7.71 -10.99 -0.08 9.82 16 14 O -0.53 -12.78 15.78 5.56 0.09 -12.69 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.55 16 16 N -0.67 -8.68 5.85 -115.06 -0.67 -9.35 16 17 C 0.05 0.45 5.24 -3.82 -0.02 0.43 16 18 C 0.15 1.44 2.81 -67.93 -0.19 1.25 16 19 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 20 C -0.16 -1.31 9.48 37.16 0.35 -0.95 16 21 N -0.70 -8.09 4.79 -56.24 -0.27 -8.36 16 22 C 0.64 9.28 7.61 -14.33 -0.11 9.17 16 23 O -0.53 -9.23 16.75 5.27 0.09 -9.15 16 24 C -0.22 -3.09 13.63 -38.81 -0.53 -3.62 16 25 C -0.05 -0.64 13.48 -37.10 -0.50 -1.14 16 26 C -0.07 -0.63 6.22 -93.41 -0.58 -1.21 16 27 C -0.16 -1.37 10.21 -26.73 -0.27 -1.64 16 28 C -0.16 -1.36 10.21 -26.73 -0.27 -1.63 16 29 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 38 H 0.05 0.59 7.18 -51.93 -0.37 0.22 16 39 H 0.35 4.98 8.43 -39.29 -0.33 4.65 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.41 4.44 8.57 -40.82 -0.35 4.09 16 46 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 423.89 15.07 6.39 6.39 Total: -1.00 -36.67 423.89 -9.39 -46.06 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.35 Total: 6.45 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.34 Total: 2.77 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.60 Total: -56.74 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -36.67 -9.39 -46.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715927892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.845 kcal (2) G-P(sol) polarization free energy of solvation -36.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds