Wall clock time and date at job start Tue Mar 31 2020 19:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46653 * 2 1 4 4 C 1.46503 * 120.00132 * 269.99579 * 3 2 1 5 5 C 1.50697 * 109.47362 * 270.00896 * 4 3 2 6 6 H 1.08007 * 120.00217 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00500 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00639 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99858 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46957 * 89.99724 * 9 7 5 11 11 H 1.48495 * 109.47122 * 209.99933 * 9 7 5 12 12 H 1.48507 * 109.46635 * 329.99913 * 9 7 5 13 13 C 1.34772 * 120.00072 * 90.00407 * 3 2 1 14 14 O 1.21282 * 120.00138 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00213 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47216 * 180.02562 * 15 13 3 17 17 C 1.46900 * 110.99869 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47017 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.47398 * 64.99849 * 18 17 16 20 20 C 1.53002 * 109.47233 * 185.00023 * 18 17 16 21 21 N 1.46499 * 109.46840 * 304.99523 * 18 17 16 22 22 C 1.34778 * 119.99771 * 155.00060 * 21 18 17 23 23 O 1.21612 * 120.00049 * 0.02562 * 22 21 18 24 24 C 1.43203 * 119.99980 * 180.02562 * 22 21 18 25 25 C 9.38397 * 122.66393 * 50.28502 * 2 1 3 26 26 C 9.36086 * 140.86345 * 269.36329 * 3 1 2 27 27 C 1.53002 * 117.49593 * 130.08056 * 26 25 24 28 28 C 1.52995 * 117.50044 * 61.45712 * 26 25 24 29 29 H 1.08997 * 109.47440 * 300.00172 * 1 2 3 30 30 H 1.09002 * 109.47034 * 60.00662 * 1 2 3 31 31 H 1.09008 * 109.47052 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46977 * 239.99649 * 2 1 3 33 33 H 1.08999 * 109.46685 * 119.99727 * 2 1 3 34 34 H 1.08999 * 109.46678 * 30.00011 * 4 3 2 35 35 H 1.08993 * 109.47661 * 150.00484 * 4 3 2 36 36 H 0.97001 * 120.00586 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.46867 * 60.00585 * 15 13 3 38 38 H 1.08999 * 109.47036 * 300.00683 * 15 13 3 39 39 H 1.00898 * 110.99537 * 56.04722 * 16 15 13 40 40 H 1.08991 * 109.47118 * 59.99842 * 17 16 15 41 41 H 1.09002 * 109.47096 * 299.99723 * 17 16 15 42 42 H 1.08996 * 109.47407 * 180.02562 * 20 18 17 43 43 H 1.09000 * 109.46986 * 299.99797 * 20 18 17 44 44 H 1.09002 * 109.47075 * 59.99068 * 20 18 17 45 45 H 0.96998 * 120.00630 * 335.00662 * 21 18 17 46 46 H 1.08998 * 115.55173 * 275.78619 * 26 25 24 47 47 H 1.08995 * 117.50264 * 359.97438 * 27 26 25 48 48 H 1.09006 * 117.49408 * 145.01958 * 27 26 25 49 49 H 1.08999 * 117.50227 * 214.97693 * 28 26 25 50 50 H 1.09001 * 117.49611 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 5.3912 2.1833 -3.2574 9 14 3.0124 3.4340 -3.9300 10 1 3.1147 4.8545 -3.5092 11 1 3.4059 3.3107 -5.3565 12 1 1.6129 2.9670 -3.7603 13 6 2.2429 2.0165 1.1671 14 8 2.6475 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3091 2.2065 3.5888 17 6 2.0758 1.5462 4.8802 18 6 2.4164 2.5130 6.0161 19 1 1.7262 3.3564 5.9947 20 6 2.2934 1.7873 7.3575 21 7 3.7879 2.9998 5.8483 22 6 4.1514 4.1854 6.3762 23 8 3.3411 4.8508 6.9923 24 6 5.4919 4.6615 6.2118 25 6 6.5947 5.0478 6.0769 26 6 7.9731 5.5360 5.9079 27 6 8.2304 6.5542 4.7953 28 6 8.7221 5.1134 4.6426 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1385 36 1 5.7171 2.5732 -4.0837 37 1 2.6214 0.4188 2.5302 38 1 0.9433 1.0124 2.5299 39 1 1.7840 3.0654 3.5214 40 1 2.7069 0.6608 4.9547 41 1 1.0285 1.2534 4.9546 42 1 2.5355 2.4761 8.1668 43 1 1.2730 1.4251 7.4824 44 1 2.9835 0.9438 7.3789 45 1 4.4344 2.4690 5.3572 46 1 8.5522 5.6360 6.8259 47 1 7.3793 6.8622 4.1881 48 1 8.9791 7.3244 4.9813 49 1 9.7941 4.9357 4.7280 50 1 8.1941 4.4742 3.9350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715927892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:29 Heat of formation + Delta-G solvation = -17.142288 kcal Electronic energy + Delta-G solvation = -28313.301817 eV Core-core repulsion = 24341.937832 eV Total energy + Delta-G solvation = -3971.363985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00591 -40.69322 -38.54252 -37.94041 -36.95020 -35.41020 -34.79784 -33.91867 -32.05979 -31.72767 -30.06084 -28.22058 -26.21073 -25.26578 -24.33826 -23.53828 -23.34525 -23.25895 -21.87482 -20.08324 -19.70195 -19.11275 -18.14680 -17.76499 -17.58649 -17.20583 -16.68343 -16.27639 -16.08192 -15.97780 -15.71179 -15.41807 -15.16837 -14.77456 -14.69139 -14.49509 -14.19987 -13.83878 -13.60735 -13.47527 -13.45288 -13.20176 -13.17907 -13.10750 -12.89029 -12.78067 -12.53458 -12.48142 -12.38878 -12.31943 -12.04160 -11.92273 -11.84765 -11.74366 -11.53533 -11.13150 -10.83841 -10.74650 -10.61423 -10.17805 -9.46419 -9.32946 -8.34555 -6.38971 0.41090 1.07032 1.30531 1.34932 1.42752 1.83825 1.98770 2.24836 2.29689 2.39431 2.95030 2.99767 3.07688 3.22746 3.69934 3.76937 3.80435 3.96742 4.01671 4.10717 4.16163 4.28523 4.35016 4.43758 4.44857 4.48986 4.61678 4.65151 4.72457 4.73034 4.75110 4.80936 4.90882 4.92180 5.01298 5.01447 5.02392 5.05931 5.16861 5.26829 5.39442 5.40699 5.47200 5.65998 5.91551 6.11269 6.24649 6.25001 6.37770 6.62298 6.76516 7.02308 7.22157 7.48022 8.82394 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007874 B = 0.003077 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.949736 B = 9097.687846 C =11987.103262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.060 3.940 16 N -0.694 5.694 17 C 0.058 3.942 18 C 0.141 3.859 19 H 0.071 0.929 20 C -0.154 4.154 21 N -0.684 5.684 22 C 0.634 3.366 23 O -0.573 6.573 24 C -0.266 4.266 25 C -0.037 4.037 26 C -0.078 4.078 27 C -0.159 4.159 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.342 0.658 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.414 0.586 46 H 0.166 0.834 47 H 0.081 0.919 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 -4.960 19.776 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.071 4.071 16 N -0.326 5.326 17 C -0.071 4.071 18 C 0.037 3.963 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.333 5.333 22 C 0.421 3.579 23 O -0.454 6.454 24 C -0.269 4.269 25 C -0.040 4.040 26 C -0.095 4.095 27 C -0.196 4.196 28 C -0.192 4.192 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.109 0.891 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.250 0.750 46 H 0.183 0.817 47 H 0.100 0.900 48 H 0.155 0.845 49 H 0.155 0.845 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.908 -4.096 20.027 20.812 hybrid contribution -0.544 0.573 -1.132 1.381 sum -4.453 -3.523 18.894 19.729 Atomic orbital electron populations 1.22158 0.94051 1.03616 1.01968 1.21776 0.95504 0.81060 1.04043 1.48069 1.64344 1.15252 1.05721 1.19237 0.94720 0.92825 0.82815 1.21567 0.97097 1.31998 1.06579 0.95237 1.25817 0.96661 0.97155 0.98973 1.70041 1.17327 1.46621 1.24470 0.85758 0.80535 0.78976 0.77932 1.20470 1.19863 1.16231 1.21388 0.77052 0.86709 0.86680 1.90654 1.47203 1.20885 1.87910 1.21807 1.02571 0.96061 0.86710 1.60036 1.64007 1.07220 1.01364 1.22376 1.02162 0.96700 0.85845 1.21198 0.82038 0.97046 0.95987 0.91112 1.22084 1.04198 1.00377 0.94569 1.45724 1.14128 1.19282 1.54151 1.14769 0.83009 0.81404 0.78671 1.90789 1.52622 1.58246 1.43772 1.20934 0.94234 1.05551 1.06161 1.22295 0.93124 0.94961 0.93602 1.19302 0.86422 1.06409 0.97366 1.23227 1.03837 0.93739 0.98762 1.23223 1.01881 0.97783 0.96357 0.91918 0.93835 0.88712 0.91192 0.88233 0.93595 0.96866 0.92295 0.86500 0.89107 0.83939 0.88197 0.90561 0.93740 0.89017 0.90641 0.74986 0.81666 0.89987 0.84492 0.84519 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.46 16 2 C 0.10 2.66 5.93 86.38 0.51 3.17 16 3 N -0.60 -23.53 2.46 -826.17 -2.03 -25.56 16 4 C 0.23 11.05 4.23 85.63 0.36 11.41 16 5 C -0.53 -31.53 9.94 25.60 0.25 -31.27 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.71 5.47 84.65 0.46 1.17 16 8 N -0.94 -59.88 13.96 21.44 0.30 -59.58 16 9 Si 0.95 44.89 27.47 68.60 1.88 46.77 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.49 19.16 7.71 87.66 0.68 19.84 16 14 O -0.59 -29.47 15.78 -3.03 -0.05 -29.52 16 15 C 0.06 1.46 4.72 85.56 0.40 1.86 16 16 N -0.69 -16.98 5.85 -517.94 -3.03 -20.00 16 17 C 0.06 0.88 5.24 86.30 0.45 1.33 16 18 C 0.14 2.69 2.81 44.99 0.13 2.81 16 19 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 20 C -0.15 -2.21 9.48 71.98 0.68 -1.53 16 21 N -0.68 -16.26 4.79 -450.11 -2.16 -18.42 16 22 C 0.63 19.52 7.61 85.49 0.65 20.17 16 23 O -0.57 -21.10 16.75 -4.07 -0.07 -21.17 16 24 C -0.27 -7.95 13.63 29.99 0.41 -7.55 16 25 C -0.04 -0.96 13.48 31.10 0.42 -0.54 16 26 C -0.08 -1.35 6.22 -12.60 -0.08 -1.43 16 27 C -0.16 -2.60 10.21 30.60 0.31 -2.29 16 28 C -0.16 -2.53 10.21 30.59 0.31 -2.22 16 29 H 0.06 1.11 7.22 -2.39 -0.02 1.10 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 33 H 0.10 2.03 6.44 -2.39 -0.02 2.01 16 34 H 0.05 2.07 7.13 -2.39 -0.02 2.05 16 35 H 0.01 0.70 6.85 -2.39 -0.02 0.69 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.12 2.41 7.40 -2.39 -0.02 2.39 16 38 H 0.09 1.57 7.18 -2.39 -0.02 1.55 16 39 H 0.34 9.63 8.43 -89.70 -0.76 8.87 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.41 9.08 8.57 -92.71 -0.79 8.28 16 46 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -87.40 423.89 0.90 -86.50 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.65 Total: 28.49 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.70 Total: 12.48 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.92 Total: -123.56 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.12 Total: -50.69 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.77 kcal Total: -87.40 0.90 -86.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715927892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.359 kcal (2) G-P(sol) polarization free energy of solvation -87.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds