Wall clock time and date at job start Tue Mar 31 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47196 * 2 1 4 4 C 1.53000 * 109.46996 * 119.99357 * 2 1 3 5 5 N 1.46905 * 109.47234 * 174.99972 * 4 2 1 6 6 C 1.46902 * 110.99800 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46577 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00224 * 359.72334 * 7 6 5 9 9 N 1.34777 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99970 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99992 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.31404 * 120.00146 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99914 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00084 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00390 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99834 * 14 12 10 18 18 N 1.46495 * 109.47124 * 239.99274 * 2 1 3 19 19 C 1.34777 * 120.00005 * 85.00344 * 18 2 1 20 20 O 1.21281 * 120.00058 * 359.97438 * 19 18 2 21 21 C 1.50702 * 120.00041 * 180.02562 * 19 18 2 22 22 H 1.09001 * 115.50553 * 34.63731 * 21 19 18 23 23 C 1.52996 * 117.42869 * 180.02562 * 21 19 18 24 24 H 1.08999 * 119.98897 * 355.25157 * 23 21 19 25 25 C 1.52999 * 117.42725 * 249.38090 * 21 19 18 26 26 H 1.09000 * 119.99086 * 4.74558 * 25 21 19 27 27 C 1.55932 * 117.17226 * 160.65802 * 25 21 19 28 28 H 1.08991 * 115.92495 * 263.05097 * 27 25 21 29 29 C 1.55929 * 104.49196 * 133.35985 * 27 25 21 30 30 C 1.56787 * 104.13189 * 288.98908 * 29 27 25 31 31 C 1.55925 * 117.17361 * 200.44788 * 23 21 19 32 32 H 1.08998 * 115.92817 * 96.95701 * 31 23 21 33 33 C 1.56953 * 100.64857 * 29.30651 * 27 25 21 34 34 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46971 * 300.00693 * 1 2 3 36 36 H 1.08998 * 109.46636 * 60.00562 * 1 2 3 37 37 H 1.08993 * 109.47319 * 54.99928 * 4 2 1 38 38 H 1.09002 * 109.47089 * 294.99983 * 4 2 1 39 39 H 1.00898 * 110.99743 * 56.04920 * 5 4 2 40 40 H 1.09000 * 109.47263 * 60.00269 * 6 5 4 41 41 H 1.09001 * 109.47582 * 299.99548 * 6 5 4 42 42 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 43 43 H 0.96996 * 120.00328 * 179.97438 * 13 12 10 44 44 H 0.97001 * 119.99606 * 264.99635 * 18 2 1 45 45 H 1.09000 * 110.40281 * 48.52080 * 29 27 25 46 46 H 1.09003 * 110.39961 * 170.93405 * 29 27 25 47 47 H 1.09000 * 111.59766 * 241.45339 * 30 29 27 48 48 H 1.08996 * 108.65726 * 119.42082 * 30 29 27 49 49 H 1.09000 * 112.02570 * 170.29972 * 33 27 25 50 50 H 1.08997 * 112.02786 * 296.75236 * 33 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5041 -0.8266 1.1906 6 6 4.0303 -1.5146 2.3770 7 6 5.5318 -1.6031 2.2816 8 8 6.1063 -1.1432 1.3175 9 7 6.2356 -2.1978 3.2651 10 6 7.6014 -2.2788 3.1781 11 1 8.1133 -1.8657 2.3216 12 6 8.3270 -2.8925 4.1919 13 7 9.6361 -2.9696 4.1087 14 14 7.4414 -3.6077 5.6730 15 1 7.0923 -5.0257 5.4038 16 1 8.3270 -3.5331 6.8628 17 1 6.2010 -2.8326 5.9299 18 7 2.0183 -0.6907 -1.1960 19 6 2.1471 -0.0185 -2.3571 20 8 1.8583 1.1581 -2.4118 21 6 2.6489 -0.7292 -3.5876 22 1 2.3462 -1.7720 -3.6836 23 6 2.7729 0.0904 -4.8735 24 1 2.4303 1.1249 -4.8954 25 6 4.0384 -0.3495 -4.1034 26 1 4.6555 0.3515 -3.5413 27 6 4.7464 -1.3625 -5.0542 28 1 5.4613 -2.0376 -4.5839 29 6 5.2831 -0.4869 -6.2275 30 6 3.9926 -0.0639 -7.0109 31 6 2.8083 -0.6967 -6.2191 32 1 1.8588 -0.7794 -6.7479 33 6 3.5042 -2.0348 -5.7386 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8899 36 1 -0.3632 0.5138 -0.8900 37 1 1.6054 -1.7196 1.2954 38 1 1.7516 -0.1581 2.1370 39 1 3.9280 0.0826 1.0825 40 1 3.6095 -2.5187 2.4313 41 1 3.7559 -0.9567 3.2723 42 1 5.7758 -2.5692 4.0342 43 1 10.1427 -3.3977 4.8165 44 1 2.2491 -1.6319 -1.1523 45 1 5.8139 0.3830 -5.8405 46 1 5.9355 -1.0751 -6.8729 47 1 4.0058 -0.4346 -8.0358 48 1 3.9188 1.0235 -7.0000 49 1 3.7929 -2.6702 -6.5759 50 1 2.8825 -2.5706 -5.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716466500.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:55 Heat of formation + Delta-G solvation = -32.188974 kcal Electronic energy + Delta-G solvation = -28842.935805 eV Core-core repulsion = 24870.919346 eV Total energy + Delta-G solvation = -3972.016458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.41010 -39.39830 -38.47616 -36.69526 -34.34263 -33.71413 -33.56306 -31.68473 -30.98534 -29.18245 -28.09658 -27.77593 -25.27142 -24.66409 -23.10822 -21.86529 -21.48916 -20.55312 -19.42281 -19.19823 -18.76259 -18.36272 -17.58191 -16.67588 -16.15737 -15.91003 -15.57761 -15.31568 -14.97102 -14.84011 -14.39849 -14.13521 -14.02671 -13.41559 -13.22087 -13.08678 -12.97233 -12.71091 -12.67546 -12.36452 -12.25172 -12.09851 -11.74395 -11.72880 -11.68750 -11.65681 -11.46935 -11.34074 -11.17990 -11.01444 -10.98747 -10.61694 -10.49830 -9.99648 -9.98577 -9.80281 -9.68852 -9.59177 -9.02679 -8.62365 -8.23379 -8.18430 -6.32836 -3.84338 2.52234 3.00303 3.04783 3.07393 3.13181 3.71788 3.72626 3.99317 4.08471 4.16230 4.26761 4.34984 4.69288 4.80912 4.81273 4.87138 4.91249 4.96741 5.00944 5.05352 5.09725 5.18560 5.22768 5.24383 5.27926 5.36693 5.38759 5.50833 5.54439 5.59110 5.59670 5.74154 5.76554 5.77591 5.85699 5.89346 5.89929 5.93336 5.95971 6.02061 6.07128 6.11382 6.19962 6.52254 7.00680 7.48569 7.56244 7.59941 8.12658 8.30487 8.57879 8.93268 9.40541 9.80785 10.80332 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002548 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.110678 B =10988.004346 C =12939.028440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.703 5.703 19 C 0.548 3.452 20 O -0.550 6.550 21 C -0.167 4.167 22 H 0.123 0.877 23 C -0.131 4.131 24 H 0.120 0.880 25 C -0.127 4.127 26 H 0.118 0.882 27 C -0.073 4.073 28 H 0.105 0.895 29 C -0.117 4.117 30 C -0.117 4.117 31 C -0.075 4.075 32 H 0.103 0.897 33 C -0.136 4.136 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.352 0.648 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.406 0.594 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.934 1.407 -14.813 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.444 6.444 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.353 5.353 19 C 0.335 3.665 20 O -0.429 6.429 21 C -0.187 4.187 22 H 0.140 0.860 23 C -0.150 4.150 24 H 0.138 0.862 25 C -0.145 4.145 26 H 0.136 0.864 27 C -0.091 4.091 28 H 0.123 0.877 29 C -0.155 4.155 30 C -0.155 4.155 31 C -0.093 4.093 32 H 0.121 0.879 33 C -0.173 4.173 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.241 0.759 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.519 1.951 -15.782 24.410 hybrid contribution -0.519 -0.415 2.287 2.382 sum -19.038 1.535 -13.495 23.386 Atomic orbital electron populations 1.22139 0.95024 1.02198 1.02603 1.20924 0.93558 0.97481 0.84047 0.89660 1.22317 0.89377 1.00721 0.95781 1.60060 1.03161 1.27042 1.39579 1.21717 0.95088 1.00037 0.91665 1.19700 0.87926 0.84128 0.84765 1.90575 1.70993 1.50522 1.32348 1.42207 1.07872 1.53120 1.19840 1.19428 0.79566 1.36014 1.08360 0.86299 1.25042 0.95437 0.97661 0.98038 1.69616 1.05075 1.43315 1.34115 0.86668 0.79612 0.80001 0.83060 1.19599 1.20188 1.19561 1.45729 1.66502 1.14484 1.08621 1.19546 0.76762 0.86481 0.83730 1.90666 1.50897 1.16078 1.85230 1.22302 1.02193 1.00762 0.93487 0.85965 1.23545 1.02240 0.99707 0.89484 0.86197 1.23566 0.88818 1.01866 1.00290 0.86384 1.23175 0.96556 0.95395 0.93970 0.87652 1.22907 0.96884 0.99567 0.96108 1.22881 0.93960 1.00528 0.98117 1.23396 0.97537 0.94526 0.93866 0.87906 1.23979 0.96754 0.96550 1.00058 0.92324 0.91664 0.91873 0.90429 0.93896 0.82823 0.89465 0.93767 0.79722 0.91598 0.75891 0.91260 0.91599 0.91511 0.91862 0.90825 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.15 1.58 2.81 -67.93 -0.19 1.39 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 4 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 5 N -0.67 -9.66 5.85 -115.05 -0.67 -10.33 16 6 C 0.05 0.75 6.17 -4.97 -0.03 0.72 16 7 C 0.45 9.98 7.82 -10.98 -0.09 9.90 16 8 O -0.56 -14.92 15.78 5.55 0.09 -14.83 16 9 N -0.59 -13.88 5.09 -10.96 -0.06 -13.93 16 10 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 14 Si 0.88 19.18 27.74 -169.99 -4.71 14.47 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 18 N -0.70 -8.07 4.80 -53.81 -0.26 -8.33 16 19 C 0.55 7.27 7.57 -10.98 -0.08 7.19 16 20 O -0.55 -9.11 16.01 5.56 0.09 -9.02 16 21 C -0.17 -1.84 5.39 -91.77 -0.49 -2.33 16 22 H 0.12 1.13 6.00 -51.93 -0.31 0.82 16 23 C -0.13 -1.39 5.87 -88.26 -0.52 -1.90 16 24 H 0.12 1.44 7.82 -51.93 -0.41 1.03 16 25 C -0.13 -1.44 6.20 -88.25 -0.55 -1.99 16 26 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 27 C -0.07 -0.70 5.18 -85.35 -0.44 -1.14 16 28 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 29 C -0.12 -1.01 6.32 -23.12 -0.15 -1.16 16 30 C -0.12 -0.93 6.23 -23.15 -0.14 -1.07 16 31 C -0.08 -0.62 5.33 -84.60 -0.45 -1.07 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 C -0.14 -1.11 6.18 -21.68 -0.13 -1.24 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.35 5.68 8.43 -39.29 -0.33 5.35 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.41 4.24 8.60 -40.82 -0.35 3.89 16 45 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.58 5.92 -51.93 -0.31 0.28 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -33.61 399.18 -10.14 -43.76 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -8.22 Total: 18.11 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.18 Total: -1.02 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.21 Total: -57.48 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.61 -10.14 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716466500.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.569 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds