Wall clock time and date at job start Tue Mar 31 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47196 * 2 1 4 4 C 1.53000 * 109.46996 * 119.99357 * 2 1 3 5 5 N 1.46905 * 109.47234 * 174.99972 * 4 2 1 6 6 C 1.46902 * 110.99800 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46577 * 180.02562 * 6 5 4 8 8 O 1.21288 * 120.00224 * 359.72334 * 7 6 5 9 9 N 1.34777 * 119.99766 * 179.97438 * 7 6 5 10 10 C 1.37095 * 119.99970 * 179.97438 * 9 7 6 11 11 H 1.07999 * 119.99992 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.31404 * 120.00146 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99914 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00084 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00390 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99834 * 14 12 10 18 18 N 1.46495 * 109.47124 * 239.99274 * 2 1 3 19 19 C 1.34777 * 120.00005 * 85.00344 * 18 2 1 20 20 O 1.21281 * 120.00058 * 359.97438 * 19 18 2 21 21 C 1.50702 * 120.00041 * 180.02562 * 19 18 2 22 22 H 1.09001 * 115.50553 * 34.63731 * 21 19 18 23 23 C 1.52996 * 117.42869 * 180.02562 * 21 19 18 24 24 H 1.08999 * 119.98897 * 355.25157 * 23 21 19 25 25 C 1.52999 * 117.42725 * 249.38090 * 21 19 18 26 26 H 1.09000 * 119.99086 * 4.74558 * 25 21 19 27 27 C 1.55932 * 117.17226 * 160.65802 * 25 21 19 28 28 H 1.08991 * 115.92495 * 263.05097 * 27 25 21 29 29 C 1.55929 * 104.49196 * 133.35985 * 27 25 21 30 30 C 1.56787 * 104.13189 * 288.98908 * 29 27 25 31 31 C 1.55925 * 117.17361 * 200.44788 * 23 21 19 32 32 H 1.08998 * 115.92817 * 96.95701 * 31 23 21 33 33 C 1.56953 * 100.64857 * 29.30651 * 27 25 21 34 34 H 1.08999 * 109.47218 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46971 * 300.00693 * 1 2 3 36 36 H 1.08998 * 109.46636 * 60.00562 * 1 2 3 37 37 H 1.08993 * 109.47319 * 54.99928 * 4 2 1 38 38 H 1.09002 * 109.47089 * 294.99983 * 4 2 1 39 39 H 1.00898 * 110.99743 * 56.04920 * 5 4 2 40 40 H 1.09000 * 109.47263 * 60.00269 * 6 5 4 41 41 H 1.09001 * 109.47582 * 299.99548 * 6 5 4 42 42 H 0.96999 * 120.00043 * 0.02562 * 9 7 6 43 43 H 0.96996 * 120.00328 * 179.97438 * 13 12 10 44 44 H 0.97001 * 119.99606 * 264.99635 * 18 2 1 45 45 H 1.09000 * 110.40281 * 48.52080 * 29 27 25 46 46 H 1.09003 * 110.39961 * 170.93405 * 29 27 25 47 47 H 1.09000 * 111.59766 * 241.45339 * 30 29 27 48 48 H 1.08996 * 108.65726 * 119.42082 * 30 29 27 49 49 H 1.09000 * 112.02570 * 170.29972 * 33 27 25 50 50 H 1.08997 * 112.02786 * 296.75236 * 33 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5041 -0.8266 1.1906 6 6 4.0303 -1.5146 2.3770 7 6 5.5318 -1.6031 2.2816 8 8 6.1063 -1.1432 1.3175 9 7 6.2356 -2.1978 3.2651 10 6 7.6014 -2.2788 3.1781 11 1 8.1133 -1.8657 2.3216 12 6 8.3270 -2.8925 4.1919 13 7 9.6361 -2.9696 4.1087 14 14 7.4414 -3.6077 5.6730 15 1 7.0923 -5.0257 5.4038 16 1 8.3270 -3.5331 6.8628 17 1 6.2010 -2.8326 5.9299 18 7 2.0183 -0.6907 -1.1960 19 6 2.1471 -0.0185 -2.3571 20 8 1.8583 1.1581 -2.4118 21 6 2.6489 -0.7292 -3.5876 22 1 2.3462 -1.7720 -3.6836 23 6 2.7729 0.0904 -4.8735 24 1 2.4303 1.1249 -4.8954 25 6 4.0384 -0.3495 -4.1034 26 1 4.6555 0.3515 -3.5413 27 6 4.7464 -1.3625 -5.0542 28 1 5.4613 -2.0376 -4.5839 29 6 5.2831 -0.4869 -6.2275 30 6 3.9926 -0.0639 -7.0109 31 6 2.8083 -0.6967 -6.2191 32 1 1.8588 -0.7794 -6.7479 33 6 3.5042 -2.0348 -5.7386 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8899 36 1 -0.3632 0.5138 -0.8900 37 1 1.6054 -1.7196 1.2954 38 1 1.7516 -0.1581 2.1370 39 1 3.9280 0.0826 1.0825 40 1 3.6095 -2.5187 2.4313 41 1 3.7559 -0.9567 3.2723 42 1 5.7758 -2.5692 4.0342 43 1 10.1427 -3.3977 4.8165 44 1 2.2491 -1.6319 -1.1523 45 1 5.8139 0.3830 -5.8405 46 1 5.9355 -1.0751 -6.8729 47 1 4.0058 -0.4346 -8.0358 48 1 3.9188 1.0235 -7.0000 49 1 3.7929 -2.6702 -6.5759 50 1 2.8825 -2.5706 -5.0214 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716466500.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:55 Heat of formation + Delta-G solvation = -57.267344 kcal Electronic energy + Delta-G solvation = -28844.023284 eV Core-core repulsion = 24870.919346 eV Total energy + Delta-G solvation = -3973.103938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24296 -40.47388 -40.15871 -37.80031 -36.07093 -35.13343 -34.41225 -33.74174 -31.94343 -29.91602 -29.09882 -28.77543 -26.68588 -25.77905 -24.41362 -22.65021 -22.34159 -21.53047 -21.25504 -20.29512 -20.00638 -19.54158 -18.55685 -17.92611 -17.43720 -16.93117 -16.73241 -16.45270 -16.38586 -15.98131 -15.56395 -15.49028 -15.14723 -14.88335 -14.63370 -14.29444 -14.07814 -13.90663 -13.79463 -13.48430 -13.18448 -13.14292 -13.01132 -12.81365 -12.71905 -12.47345 -12.41348 -12.39631 -12.22879 -12.02788 -11.98477 -11.86351 -11.74029 -11.51151 -11.22675 -10.89014 -10.74300 -10.57202 -10.44586 -10.24929 -10.00098 -9.35868 -8.41427 -6.02540 1.30092 1.36095 1.44873 1.48943 1.96584 2.15817 2.23191 2.70933 2.82465 3.14996 3.32557 3.42847 3.51964 3.61326 3.79994 3.95944 4.00566 4.06162 4.13580 4.16919 4.22320 4.26843 4.35682 4.37251 4.46786 4.47947 4.56856 4.59451 4.64581 4.67816 4.75457 4.78976 4.87789 5.00173 5.05829 5.07530 5.19207 5.21412 5.22356 5.25418 5.26511 5.36858 5.49003 5.52231 5.58574 5.89064 6.02555 6.27100 6.59672 6.62591 6.88417 7.30167 7.40051 7.97466 8.76445 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.002548 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.110678 B =10988.004346 C =12939.028440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.057 0.943 4 C 0.056 3.944 5 N -0.683 5.683 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.615 6.615 9 N -0.591 5.591 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.255 1.255 16 H -0.277 1.277 17 H -0.230 1.230 18 N -0.695 5.695 19 C 0.540 3.460 20 O -0.592 6.592 21 C -0.164 4.164 22 H 0.147 0.853 23 C -0.127 4.127 24 H 0.099 0.901 25 C -0.143 4.143 26 H 0.086 0.914 27 C -0.076 4.076 28 H 0.100 0.900 29 C -0.119 4.119 30 C -0.115 4.115 31 C -0.066 4.066 32 H 0.123 0.877 33 C -0.128 4.128 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.338 0.662 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.413 0.587 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.579 -0.945 -13.571 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.075 0.925 4 C -0.073 4.073 5 N -0.315 5.315 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.499 6.499 9 N -0.233 5.233 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.202 1.202 17 H -0.153 1.153 18 N -0.345 5.345 19 C 0.327 3.673 20 O -0.473 6.473 21 C -0.184 4.184 22 H 0.164 0.836 23 C -0.146 4.146 24 H 0.117 0.883 25 C -0.162 4.162 26 H 0.104 0.896 27 C -0.094 4.094 28 H 0.118 0.882 29 C -0.157 4.157 30 C -0.152 4.152 31 C -0.084 4.084 32 H 0.141 0.859 33 C -0.165 4.165 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.206 -0.423 -14.528 26.539 hybrid contribution 0.694 0.432 1.819 1.994 sum -21.512 0.009 -12.709 24.986 Atomic orbital electron populations 1.22048 0.93058 1.03356 1.02501 1.20997 0.94975 0.96121 0.84119 0.92458 1.22379 0.86610 1.02344 0.95963 1.60069 1.05527 1.26329 1.39544 1.21651 0.89301 1.02616 0.93331 1.21071 0.90888 0.81490 0.83079 1.90560 1.73010 1.52029 1.34351 1.42025 1.06075 1.54010 1.21178 1.18990 0.82037 1.37470 1.07311 0.92930 1.26152 0.96193 0.97303 1.01872 1.69806 1.07573 1.44432 1.35858 0.85340 0.79410 0.79791 0.76793 1.17986 1.20199 1.15320 1.45748 1.65607 1.14718 1.08393 1.19984 0.76313 0.86144 0.84828 1.90640 1.52866 1.17851 1.85959 1.22360 1.01576 1.01704 0.92789 0.83580 1.23584 1.00981 0.99184 0.90866 0.88268 1.23533 0.89108 1.02535 1.01041 0.89589 1.23204 0.97296 0.95190 0.93706 0.88213 1.22931 0.97586 0.99054 0.96115 1.22896 0.93197 1.00154 0.98984 1.23483 0.98505 0.94039 0.92342 0.85902 1.23962 0.95561 0.96437 1.00490 0.90440 0.89919 0.93858 0.87935 0.91795 0.84434 0.86058 0.90552 0.77414 0.91155 0.75048 0.92858 0.90248 0.89414 0.92664 0.89051 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.95 2.81 44.99 0.13 3.08 16 3 H 0.06 1.52 7.58 -2.39 -0.02 1.50 16 4 C 0.06 1.00 5.24 86.30 0.45 1.45 16 5 N -0.68 -18.58 5.85 -517.91 -3.03 -21.61 16 6 C 0.06 1.77 6.17 85.56 0.53 2.30 16 7 C 0.45 19.69 7.82 87.66 0.69 20.37 16 8 O -0.62 -34.00 15.78 -3.05 -0.05 -34.05 16 9 N -0.59 -27.36 5.09 -306.98 -1.56 -28.92 16 10 C -0.33 -19.22 10.16 84.04 0.85 -18.36 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -56.50 13.96 21.66 0.30 -56.19 16 14 Si 0.97 38.20 27.74 68.60 1.90 40.11 16 15 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 16 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 18 N -0.69 -15.63 4.80 -442.53 -2.12 -17.75 16 19 C 0.54 14.81 7.57 87.66 0.66 15.48 16 20 O -0.59 -20.76 16.01 -3.03 -0.05 -20.81 16 21 C -0.16 -3.66 5.39 -11.54 -0.06 -3.72 16 22 H 0.15 2.50 6.00 -2.39 -0.01 2.49 16 23 C -0.13 -2.77 5.87 -9.26 -0.05 -2.82 16 24 H 0.10 2.57 7.82 -2.39 -0.02 2.55 16 25 C -0.14 -3.48 6.20 -9.26 -0.06 -3.53 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 C -0.08 -1.46 5.18 -7.38 -0.04 -1.49 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 C -0.12 -2.07 6.32 32.93 0.21 -1.86 16 30 C -0.11 -1.69 6.23 32.92 0.20 -1.49 16 31 C -0.07 -0.98 5.33 -6.90 -0.04 -1.02 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 C -0.13 -1.82 6.18 33.87 0.21 -1.61 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.34 10.90 8.43 -89.70 -0.76 10.14 16 40 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 43 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.41 8.05 8.60 -92.71 -0.80 7.25 16 45 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 46 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.05 0.90 8.04 -2.39 -0.02 0.88 16 49 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.08 1.05 5.92 -2.39 -0.01 1.04 16 Total: -1.00 -81.75 399.18 -0.95 -82.70 By element: Atomic # 1 Polarization: 53.12 SS G_CDS: -1.17 Total: 51.95 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 4.83 Total: 4.58 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.41 Total: -124.47 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -81.75 -0.95 -82.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716466500.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.431 kcal (2) G-P(sol) polarization free energy of solvation -81.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds