Wall clock time and date at job start Tue Mar 31 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 C 1.53001 * 109.46998 * 119.99811 * 2 1 3 5 5 N 1.46499 * 109.46858 * 175.00071 * 4 2 1 6 6 C 1.35436 * 119.47424 * 90.00369 * 5 4 2 7 7 C 1.35753 * 121.23339 * 179.72015 * 6 5 4 8 8 C 1.39473 * 120.12985 * 0.27882 * 7 6 5 9 9 C 1.39334 * 118.96117 * 359.97438 * 8 7 6 10 10 C 1.47085 * 120.59203 * 180.02562 * 9 8 7 11 11 O 1.21653 * 119.99192 * 354.39725 * 10 9 8 12 12 N 1.34765 * 120.00333 * 174.39582 * 10 9 8 13 13 C 1.46500 * 120.00016 * 185.01159 * 12 10 9 14 14 C 1.53003 * 109.47128 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47729 * 295.00251 * 14 13 12 16 16 C 1.52998 * 109.47218 * 175.00024 * 14 13 12 17 17 N 1.46501 * 109.46952 * 55.00479 * 14 13 12 18 18 C 1.46504 * 120.00030 * 59.99690 * 17 14 13 19 19 C 1.36935 * 119.99963 * 239.99732 * 17 14 13 20 20 H 1.08006 * 120.00148 * 25.01126 * 19 17 14 21 21 C 1.38810 * 120.00175 * 205.01209 * 19 17 14 22 22 N 1.31616 * 119.99847 * 9.96705 * 21 19 17 23 23 Si 1.86804 * 120.00096 * 189.97051 * 21 19 17 24 24 H 1.48500 * 109.47204 * 59.99878 * 23 21 19 25 25 H 1.48502 * 109.47233 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46929 * 299.99719 * 23 21 19 27 27 C 1.34657 * 119.47173 * 270.24016 * 5 4 2 28 28 O 1.21887 * 120.10407 * 0.02562 * 27 5 4 29 29 H 1.09004 * 109.46873 * 300.00231 * 1 2 3 30 30 H 1.09005 * 109.47011 * 59.99715 * 1 2 3 31 31 H 1.08995 * 109.47237 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47352 * 240.00056 * 2 1 3 33 33 H 1.09007 * 109.46770 * 59.99934 * 3 2 1 34 34 H 1.09000 * 109.47341 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47288 * 300.00217 * 3 2 1 36 36 H 1.09006 * 109.46805 * 55.00364 * 4 2 1 37 37 H 1.08991 * 109.47380 * 294.99935 * 4 2 1 38 38 H 1.08001 * 119.37644 * 359.97438 * 6 5 4 39 39 H 1.08000 * 119.93283 * 180.25631 * 7 6 5 40 40 H 1.08004 * 120.52112 * 179.97438 * 8 7 6 41 41 H 0.96998 * 120.00451 * 5.01029 * 12 10 9 42 42 H 1.09000 * 109.47362 * 300.00104 * 13 12 10 43 43 H 1.09000 * 109.46981 * 60.00336 * 13 12 10 44 44 H 1.09009 * 109.47264 * 300.00497 * 16 14 13 45 45 H 1.09008 * 109.47202 * 59.99926 * 16 14 13 46 46 H 1.08999 * 109.47840 * 180.02562 * 16 14 13 47 47 H 1.08997 * 109.46794 * 85.77875 * 18 17 14 48 48 H 1.09010 * 109.46866 * 205.77423 * 18 17 14 49 49 H 1.08998 * 109.47261 * 325.77447 * 18 17 14 50 50 H 0.97008 * 120.00014 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.2610 0.1602 1.7216 7 6 5.6168 0.0967 1.6919 8 6 6.2538 -0.9950 1.1024 9 6 5.4774 -2.0113 0.5494 10 6 6.1117 -3.1792 -0.0807 11 8 7.3204 -3.2169 -0.2139 12 7 5.3540 -4.2075 -0.5105 13 6 5.9913 -5.4169 -1.0374 14 6 4.9144 -6.4216 -1.4519 15 1 4.3625 -6.7473 -0.5702 16 6 5.5744 -7.6316 -2.1161 17 7 3.9931 -5.7873 -2.3980 18 6 4.4959 -5.2624 -3.6700 19 6 2.6619 -5.6852 -2.0934 20 1 2.3428 -5.6815 -1.0616 21 6 1.7227 -5.5863 -3.1107 22 7 2.0830 -5.7865 -4.3607 23 14 -0.0525 -5.1689 -2.7057 24 1 -0.1091 -3.8451 -2.0352 25 1 -0.8484 -5.1231 -3.9586 26 1 -0.6109 -6.2061 -1.8015 27 6 4.0640 -1.8999 0.6053 28 8 3.3625 -2.7754 0.1287 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1369 38 1 3.7802 1.0113 2.1807 39 1 6.2032 0.8934 2.1253 40 1 7.3320 -1.0518 1.0749 41 1 4.3868 -4.1470 -0.4710 42 1 6.6005 -5.1587 -1.9036 43 1 6.6234 -5.8593 -0.2675 44 1 6.1263 -7.3060 -2.9980 45 1 6.2600 -8.1035 -1.4122 46 1 4.8072 -8.3472 -2.4119 47 1 4.5195 -6.0629 -4.4094 48 1 3.8396 -4.4649 -4.0187 49 1 5.5024 -4.8688 -3.5282 50 1 1.4266 -5.7177 -5.0716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717490208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:23 Heat of formation + Delta-G solvation = -40.654653 kcal Electronic energy + Delta-G solvation = -30852.144363 eV Core-core repulsion = 26879.760805 eV Total energy + Delta-G solvation = -3972.383558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.64627 -40.42042 -38.44845 -38.29256 -37.22405 -35.30843 -34.34388 -33.60864 -31.37008 -30.96620 -28.25625 -28.06140 -27.94833 -27.49451 -25.33247 -24.69804 -23.80487 -21.80797 -21.27921 -20.99659 -19.04109 -18.78012 -18.47817 -17.89323 -17.22749 -16.99112 -16.88130 -16.58879 -16.13904 -15.83550 -15.55994 -15.40594 -15.27264 -14.86448 -14.59307 -14.51127 -14.00884 -13.92466 -13.63064 -13.46745 -13.38909 -13.14793 -13.09993 -13.07741 -12.90881 -12.77357 -12.67099 -12.55529 -12.35458 -12.28949 -12.17390 -11.96352 -11.85565 -11.73438 -11.57950 -11.15054 -10.98316 -10.88844 -10.60759 -9.87818 -9.02986 -8.75686 -7.82994 -5.29262 -0.51736 0.85064 1.38930 1.43540 1.50029 1.50914 1.78954 2.48597 2.56531 2.76335 3.33102 3.50361 3.61355 3.70360 3.76914 3.86112 3.95255 4.01163 4.03907 4.13017 4.24111 4.33042 4.35307 4.53706 4.57391 4.64997 4.67006 4.72554 4.75088 4.83426 4.88753 4.93775 4.96046 4.98711 4.99413 5.17411 5.20334 5.25029 5.32580 5.33205 5.34831 5.38096 5.54743 5.60190 5.66072 5.73258 5.95495 6.35530 6.71866 7.00449 7.15890 7.43657 7.85793 8.32188 9.22481 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009089 B = 0.005339 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.793396 B = 5243.037140 C = 7796.764196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.090 3.910 5 N -0.483 5.483 6 C 0.183 3.817 7 C -0.241 4.241 8 C 0.076 3.924 9 C -0.328 4.328 10 C 0.559 3.441 11 O -0.601 6.601 12 N -0.707 5.707 13 C 0.112 3.888 14 C 0.156 3.844 15 H 0.063 0.937 16 C -0.143 4.143 17 N -0.600 5.600 18 C 0.189 3.811 19 C -0.242 4.242 20 H 0.060 0.940 21 C -0.052 4.052 22 N -0.939 5.939 23 Si 0.964 3.036 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.511 3.489 28 O -0.571 6.571 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.228 0.772 39 H 0.202 0.798 40 H 0.150 0.850 41 H 0.418 0.582 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.043 0.957 47 H -0.001 1.001 48 H 0.022 0.978 49 H 0.007 0.993 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 19.806 18.026 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.030 4.030 5 N -0.189 5.189 6 C 0.053 3.947 7 C -0.262 4.262 8 C 0.052 3.948 9 C -0.335 4.335 10 C 0.348 3.652 11 O -0.487 6.487 12 N -0.366 5.366 13 C -0.015 4.015 14 C 0.049 3.951 15 H 0.081 0.919 16 C -0.203 4.203 17 N -0.323 5.323 18 C 0.044 3.956 19 C -0.373 4.373 20 H 0.078 0.922 21 C -0.247 4.247 22 N -0.587 5.587 23 Si 0.792 3.208 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.200 1.200 27 C 0.314 3.686 28 O -0.455 6.455 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.244 0.756 39 H 0.219 0.781 40 H 0.168 0.832 41 H 0.266 0.734 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.018 0.982 48 H 0.041 0.959 49 H 0.025 0.975 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.096 19.163 17.485 26.026 hybrid contribution -1.259 -0.559 -0.904 1.648 sum 0.837 18.604 16.581 24.934 Atomic orbital electron populations 1.21740 0.93033 1.01523 1.03646 1.21431 0.97512 0.97969 0.96524 1.21935 1.00983 0.93318 1.04005 1.22413 0.75821 1.03532 1.01232 1.45550 1.10150 1.17857 1.45329 1.23266 0.92692 0.90514 0.88201 1.21179 0.93483 1.01822 1.09738 1.22288 1.01522 0.88348 0.82628 1.20854 0.92855 1.01902 1.17886 1.18088 0.86096 0.82987 0.78021 1.90661 1.14953 1.82048 1.61015 1.46677 1.13206 1.15700 1.61025 1.21790 0.95933 0.86092 0.97641 1.20775 0.90144 0.91356 0.92858 0.91861 1.22021 1.00096 0.97459 1.00706 1.43985 1.04046 1.66555 1.17716 1.20321 0.92865 0.95618 0.86780 1.19312 0.83123 1.43121 0.91715 0.92246 1.25708 1.01460 1.01861 0.95631 1.70210 1.33911 1.55295 0.99264 0.85388 0.80689 0.78253 0.76440 1.21061 1.21847 1.20033 1.17242 0.88876 0.82521 0.79975 1.90772 1.64255 1.40626 1.49862 0.88906 0.92266 0.94562 0.95325 0.88455 0.92584 0.92640 0.90831 0.83262 0.75602 0.78123 0.83194 0.73442 0.93678 0.90994 0.93589 0.90201 0.93749 0.98238 0.95887 0.97515 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 71.98 0.66 -1.85 16 2 C -0.12 -2.25 3.12 -10.79 -0.03 -2.28 16 3 C -0.15 -1.65 8.63 71.98 0.62 -1.03 16 4 C 0.09 1.57 4.83 86.38 0.42 1.99 16 5 N -0.48 -9.85 2.46 -649.69 -1.60 -11.45 16 6 C 0.18 1.71 8.20 83.56 0.69 2.40 16 7 C -0.24 -2.55 9.99 21.99 0.22 -2.33 16 8 C 0.08 1.69 9.70 22.83 0.22 1.91 16 9 C -0.33 -11.10 5.92 -19.79 -0.12 -11.22 16 10 C 0.56 24.03 7.74 86.57 0.67 24.70 16 11 O -0.60 -27.46 16.41 -4.20 -0.07 -27.53 16 12 N -0.71 -32.53 5.30 -466.70 -2.47 -35.00 16 13 C 0.11 4.85 4.91 86.38 0.42 5.27 16 14 C 0.16 7.11 2.88 44.99 0.13 7.24 16 15 H 0.06 2.90 7.88 -2.39 -0.02 2.88 16 16 C -0.14 -5.67 9.19 71.98 0.66 -5.01 16 17 N -0.60 -32.81 2.28 -702.76 -1.60 -34.41 16 18 C 0.19 10.57 8.07 127.77 1.03 11.61 16 19 C -0.24 -14.38 9.30 84.03 0.78 -13.60 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 21 C -0.05 -3.14 5.10 84.86 0.43 -2.70 16 22 N -0.94 -58.99 10.72 21.65 0.23 -58.75 16 23 Si 0.96 48.60 29.57 68.60 2.03 50.63 16 24 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 26 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 27 C 0.51 17.23 7.44 85.17 0.63 17.86 16 28 O -0.57 -25.36 13.26 -4.95 -0.07 -25.42 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 34 H 0.06 0.62 6.33 -2.39 -0.02 0.61 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.83 7.39 -2.38 -0.02 1.81 16 37 H 0.15 0.88 8.00 -2.39 -0.02 0.86 16 38 H 0.23 -0.68 7.87 -2.91 -0.02 -0.70 16 39 H 0.20 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.15 3.16 7.70 -2.91 -0.02 3.14 16 41 H 0.42 20.85 4.49 -92.77 -0.42 20.44 16 42 H 0.04 2.06 6.91 -2.39 -0.02 2.04 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.04 1.83 7.67 -2.38 -0.02 1.81 16 45 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.00 -0.04 7.82 -2.39 -0.02 -0.06 16 48 H 0.02 1.39 6.76 -2.38 -0.02 1.37 16 49 H 0.01 0.34 6.55 -2.39 -0.02 0.33 16 50 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -88.95 398.38 4.40 -84.55 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.51 Total: 24.43 kcal Atomic # 6 Polarization: 25.52 SS G_CDS: 7.44 Total: 32.96 kcal Atomic # 7 Polarization: -134.17 SS G_CDS: -5.45 Total: -139.61 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.13 Total: -52.95 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -88.95 4.40 -84.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717490208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.900 kcal (2) G-P(sol) polarization free energy of solvation -88.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds