Wall clock time and date at job start Tue Mar 31 2020 18:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99941 * 179.97438 * 9 8 7 12 12 H 1.09006 * 109.46907 * 59.99928 * 11 9 8 13 13 C 1.52995 * 109.47133 * 300.00367 * 11 9 8 14 14 O 1.42897 * 109.47021 * 179.97438 * 11 9 8 15 15 C 1.35673 * 116.99975 * 210.00026 * 14 11 9 16 16 C 1.38921 * 119.68541 * 180.02562 * 15 14 11 17 17 C 1.38382 * 119.11614 * 179.97438 * 16 15 14 18 18 C 1.38832 * 118.47889 * 0.02562 * 17 16 15 19 19 C 1.38047 * 119.29291 * 359.97438 * 18 17 16 20 20 N 1.31963 * 120.83064 * 359.75152 * 19 18 17 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08993 * 109.47500 * 60.00031 * 13 11 9 43 43 H 1.08998 * 109.47045 * 179.97438 * 13 11 9 44 44 H 1.08997 * 109.47256 * 299.99153 * 13 11 9 45 45 H 1.08008 * 120.44407 * 359.95942 * 16 15 14 46 46 H 1.07993 * 120.76264 * 180.02562 * 17 16 15 47 47 H 1.08001 * 120.35005 * 180.02562 * 18 17 16 48 48 H 1.07999 * 119.58266 * 180.02562 * 19 18 17 49 49 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3089 -4.6057 4.5655 11 6 1.1857 -6.4501 3.6137 12 1 1.6200 -6.9890 2.7715 13 6 -0.3391 -6.4521 3.4885 14 8 1.5648 -7.0894 4.8342 15 6 1.7762 -8.4288 4.7881 16 6 2.1464 -9.1069 5.9426 17 6 2.3586 -10.4731 5.8824 18 6 2.1925 -11.1156 4.6630 19 6 1.8231 -10.3784 3.5558 20 7 1.6227 -9.0772 3.6458 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 5.5483 2.8366 2.9205 28 1 7.3617 1.3669 3.5792 29 1 7.3717 2.3968 1.3839 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 -0.6279 -5.9646 2.5574 43 1 -0.7024 -7.4797 3.4880 44 1 -0.7735 -5.9134 4.3306 45 1 2.2674 -8.5750 6.8748 46 1 2.6467 -11.0267 6.7637 47 1 2.3498 -12.1810 4.5816 48 1 1.6922 -10.8736 2.6050 49 1 3.9897 -1.4834 0.8938 50 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717722577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:26 Heat of formation + Delta-G solvation = -36.774689 kcal Electronic energy + Delta-G solvation = -28660.053234 eV Core-core repulsion = 24687.837924 eV Total energy + Delta-G solvation = -3972.215310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.99564 -39.68429 -37.98890 -37.32838 -34.70921 -33.03742 -32.82940 -32.53518 -31.00194 -30.23737 -29.30123 -26.40886 -25.60195 -24.76258 -23.84494 -23.21161 -22.62053 -21.11841 -20.37432 -19.16969 -18.76422 -17.68725 -17.10933 -16.57978 -16.20923 -15.92709 -15.65981 -15.27590 -14.87195 -14.75062 -14.29026 -14.00503 -13.90797 -13.63481 -13.49771 -13.39379 -13.27504 -13.15462 -12.70745 -12.55132 -12.26708 -12.00342 -11.98107 -11.69739 -11.61589 -11.33736 -11.18604 -10.89781 -10.76383 -10.58298 -10.42847 -10.25599 -10.24058 -10.01542 -9.95100 -9.88519 -9.56617 -9.43506 -8.87059 -8.80150 -8.75694 -6.90920 -5.72725 -3.00196 0.86580 0.97149 2.44397 2.70237 3.46367 3.47116 3.52050 3.52527 3.54416 3.97739 4.54272 4.60253 4.62966 4.69156 4.74957 4.82783 4.91088 4.96268 5.21838 5.32661 5.37992 5.42246 5.44897 5.49549 5.56709 5.65501 5.71190 5.72223 5.81214 5.89195 5.92403 6.02263 6.12230 6.17681 6.24029 6.28070 6.40630 6.42090 6.55357 6.66791 6.71130 6.72690 6.84103 6.98606 7.13836 7.34532 7.53035 7.60794 7.76069 8.31534 8.45449 9.57087 10.13697 10.48373 11.49857 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.002333 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.427701 B =11999.259974 C =13429.736670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.185 3.815 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.123 3.877 8 N -0.722 5.722 9 C 0.510 3.490 10 O -0.517 6.517 11 C 0.072 3.928 12 H 0.114 0.886 13 C -0.162 4.162 14 O -0.275 6.275 15 C 0.326 3.674 16 C -0.189 4.189 17 C -0.040 4.040 18 C -0.216 4.216 19 C 0.140 3.860 20 N -0.543 5.543 21 N -0.721 5.721 22 C -0.230 4.230 23 H 0.072 0.928 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.159 0.841 49 H 0.383 0.617 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 -19.453 2.252 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C 0.001 3.999 8 N -0.375 5.375 9 C 0.294 3.706 10 O -0.392 6.392 11 C 0.012 3.988 12 H 0.132 0.868 13 C -0.220 4.220 14 O -0.180 6.180 15 C 0.147 3.853 16 C -0.209 4.209 17 C -0.066 4.066 18 C -0.237 4.237 19 C -0.016 4.016 20 N -0.267 5.267 21 N -0.362 5.362 22 C -0.362 4.362 23 H 0.090 0.910 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.732 3.268 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.177 0.823 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.962 -18.278 2.552 23.758 hybrid contribution 0.753 -0.120 0.314 0.825 sum -14.208 -18.399 2.866 23.422 Atomic orbital electron populations 1.21935 0.97147 1.00615 1.00747 1.21772 0.93267 0.97736 1.00468 1.21830 1.04271 0.94849 0.98818 1.20188 0.86041 0.91038 0.95274 0.93284 1.22135 1.00521 0.98273 0.96488 1.21489 1.01339 0.78785 0.98276 1.45984 1.57981 1.13871 1.19703 1.20128 0.80479 0.86637 0.83376 1.90772 1.39032 1.75184 1.34164 1.22119 0.96741 0.91755 0.88161 0.86822 1.22155 0.92727 1.03724 1.03388 1.86397 1.81997 1.16006 1.33629 1.19920 0.90946 0.84437 0.90018 1.21125 1.06559 0.94720 0.98515 1.21429 0.93729 0.93143 0.98283 1.21980 1.06019 1.01736 0.93940 1.22422 0.92449 0.87915 0.98776 1.67259 1.21206 1.11716 1.26508 1.42452 0.98916 1.21086 1.73756 1.19235 0.88783 0.96222 1.31912 0.90970 1.24714 0.96512 0.97721 1.02034 1.69660 1.06724 1.29815 1.51780 0.86208 0.80101 0.82167 0.78306 1.20566 1.21954 1.22035 0.93281 0.93839 0.93213 0.92196 0.89494 0.95229 0.94120 0.91471 0.91586 0.89633 0.91716 0.76966 0.90302 0.90940 0.91208 0.83886 0.84127 0.84576 0.82340 0.78314 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.85 37.16 0.33 -1.63 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.11 16 3 C -0.14 -2.57 8.26 37.16 0.31 -2.26 16 4 C 0.19 3.42 2.02 -67.93 -0.14 3.28 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C -0.14 -2.01 4.65 -26.73 -0.12 -2.13 16 7 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 8 N -0.72 -9.77 5.45 -60.30 -0.33 -10.09 16 9 C 0.51 8.05 7.23 -10.98 -0.08 7.97 16 10 O -0.52 -10.82 16.50 -14.35 -0.24 -11.06 16 11 C 0.07 0.91 2.90 -27.88 -0.08 0.83 16 12 H 0.11 1.34 6.99 -51.93 -0.36 0.97 16 13 C -0.16 -1.51 9.43 37.15 0.35 -1.16 16 14 O -0.27 -3.96 9.30 -38.63 -0.36 -4.31 16 15 C 0.33 4.02 7.45 -17.12 -0.13 3.90 16 16 C -0.19 -1.91 10.04 -39.28 -0.39 -2.30 16 17 C -0.04 -0.30 10.17 -39.31 -0.40 -0.70 16 18 C -0.22 -1.49 10.11 -39.43 -0.40 -1.88 16 19 C 0.14 1.14 11.18 -17.57 -0.20 0.95 16 20 N -0.54 -6.02 8.65 -13.33 -0.12 -6.14 16 21 N -0.72 -16.98 4.45 -53.42 -0.24 -17.22 16 22 C -0.23 -6.12 7.57 -15.06 -0.11 -6.23 16 23 H 0.07 1.89 7.40 -52.49 -0.39 1.50 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 26 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.58 6.32 -51.93 -0.33 0.26 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.82 6.17 -51.93 -0.32 0.50 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.40 3.90 7.89 -40.82 -0.32 3.58 16 42 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 46 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 47 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 50 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -34.01 407.69 -9.06 -43.07 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.20 Total: 11.30 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.96 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.04 Total: -60.67 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.60 Total: -15.37 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.01 -9.06 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717722577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.293 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds