Wall clock time and date at job start Tue Mar 31 2020 18:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21274 * 120.00359 * 359.97438 * 9 8 7 11 11 C 1.50705 * 119.99941 * 179.97438 * 9 8 7 12 12 H 1.09006 * 109.46907 * 59.99928 * 11 9 8 13 13 C 1.52995 * 109.47133 * 300.00367 * 11 9 8 14 14 O 1.42897 * 109.47021 * 179.97438 * 11 9 8 15 15 C 1.35673 * 116.99975 * 210.00026 * 14 11 9 16 16 C 1.38921 * 119.68541 * 180.02562 * 15 14 11 17 17 C 1.38382 * 119.11614 * 179.97438 * 16 15 14 18 18 C 1.38832 * 118.47889 * 0.02562 * 17 16 15 19 19 C 1.38047 * 119.29291 * 359.97438 * 18 17 16 20 20 N 1.31963 * 120.83064 * 359.75152 * 19 18 17 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 38 38 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 39 39 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 40 40 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 41 41 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 42 42 H 1.08993 * 109.47500 * 60.00031 * 13 11 9 43 43 H 1.08998 * 109.47045 * 179.97438 * 13 11 9 44 44 H 1.08997 * 109.47256 * 299.99153 * 13 11 9 45 45 H 1.08008 * 120.44407 * 359.95942 * 16 15 14 46 46 H 1.07993 * 120.76264 * 180.02562 * 17 16 15 47 47 H 1.08001 * 120.35005 * 180.02562 * 18 17 16 48 48 H 1.07999 * 119.58266 * 180.02562 * 19 18 17 49 49 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9347 -2.8479 2.5565 8 7 1.4470 -4.2293 2.5562 9 6 1.6879 -5.0292 3.6138 10 8 2.3089 -4.6057 4.5655 11 6 1.1857 -6.4501 3.6137 12 1 1.6200 -6.9890 2.7715 13 6 -0.3391 -6.4521 3.4885 14 8 1.5648 -7.0894 4.8342 15 6 1.7762 -8.4288 4.7881 16 6 2.1464 -9.1069 5.9426 17 6 2.3586 -10.4731 5.8824 18 6 2.1925 -11.1156 4.6630 19 6 1.8231 -10.3784 3.5558 20 7 1.6227 -9.0772 3.6458 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 5.5483 2.8366 2.9205 28 1 7.3617 1.3669 3.5792 29 1 7.3717 2.3968 1.3839 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4437 -2.1651 1.1596 38 1 1.9646 -2.7028 0.4074 39 1 3.0210 -2.8466 2.6460 40 1 1.5002 -2.3089 3.3983 41 1 0.9506 -4.5682 1.7948 42 1 -0.6279 -5.9646 2.5574 43 1 -0.7024 -7.4797 3.4880 44 1 -0.7735 -5.9134 4.3306 45 1 2.2674 -8.5750 6.8748 46 1 2.6467 -11.0267 6.7637 47 1 2.3498 -12.1810 4.5816 48 1 1.6922 -10.8736 2.6050 49 1 3.9897 -1.4834 0.8938 50 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717722577.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:25 Heat of formation + Delta-G solvation = -60.710318 kcal Electronic energy + Delta-G solvation = -28661.091161 eV Core-core repulsion = 24687.837924 eV Total energy + Delta-G solvation = -3973.253236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83977 -40.80140 -39.12542 -38.63398 -36.10484 -34.90782 -33.66556 -33.37151 -32.44066 -31.25624 -30.70389 -27.72440 -27.02752 -25.84706 -24.84761 -24.43663 -23.70559 -22.50360 -21.55116 -20.63517 -19.60011 -19.14267 -18.65636 -17.48901 -17.11159 -16.88388 -16.81077 -16.71139 -16.23713 -15.71805 -15.51526 -15.42959 -15.28528 -15.09703 -14.60643 -14.51863 -14.37265 -14.14019 -13.97658 -13.50724 -13.39776 -13.20012 -12.93852 -12.90105 -12.88833 -12.78384 -12.65934 -12.46562 -12.22639 -12.17275 -11.97088 -11.91402 -11.69995 -11.37952 -11.19178 -10.95989 -10.88586 -10.75414 -10.59256 -10.18338 -9.50021 -8.90426 -7.89037 -5.13253 0.20046 0.32027 1.43224 1.44428 1.46156 1.49426 1.54234 2.45864 2.58450 2.82505 3.27653 3.44554 3.54445 3.84888 3.91439 3.94368 3.97854 4.05206 4.11844 4.17673 4.23032 4.28729 4.37179 4.42387 4.53889 4.66564 4.68326 4.70438 4.80458 4.81315 4.82525 4.98379 5.04624 5.06650 5.08620 5.15043 5.24969 5.26625 5.29042 5.36066 5.41280 5.46768 5.53517 5.58508 5.72783 5.81888 6.16918 6.33992 6.46389 6.85131 7.13706 7.40414 8.18060 8.39191 9.34950 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013468 B = 0.002333 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.427701 B =11999.259974 C =13429.736670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.177 3.823 5 H 0.039 0.961 6 C -0.119 4.119 7 C 0.134 3.866 8 N -0.702 5.702 9 C 0.505 3.495 10 O -0.579 6.579 11 C 0.080 3.920 12 H 0.122 0.878 13 C -0.152 4.152 14 O -0.307 6.307 15 C 0.292 3.708 16 C -0.208 4.208 17 C -0.037 4.037 18 C -0.204 4.204 19 C 0.127 3.873 20 N -0.558 5.558 21 N -0.731 5.731 22 C -0.208 4.208 23 H 0.075 0.925 24 C -0.082 4.082 25 N -0.971 5.971 26 Si 0.956 3.044 27 H -0.266 1.266 28 H -0.302 1.302 29 H -0.296 1.296 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.419 0.581 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.140 0.860 46 H 0.172 0.828 47 H 0.172 0.828 48 H 0.189 0.811 49 H 0.371 0.629 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 -21.266 1.129 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.057 0.943 6 C -0.157 4.157 7 C 0.010 3.990 8 N -0.355 5.355 9 C 0.291 3.709 10 O -0.458 6.458 11 C 0.020 3.980 12 H 0.139 0.861 13 C -0.210 4.210 14 O -0.214 6.214 15 C 0.114 3.886 16 C -0.229 4.229 17 C -0.062 4.062 18 C -0.224 4.224 19 C -0.028 4.028 20 N -0.283 5.283 21 N -0.370 5.370 22 C -0.340 4.340 23 H 0.093 0.907 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.787 3.213 27 H -0.190 1.190 28 H -0.230 1.230 29 H -0.223 1.223 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.257 0.743 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.158 0.842 46 H 0.190 0.810 47 H 0.190 0.810 48 H 0.206 0.794 49 H 0.203 0.797 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.941 -20.091 1.387 26.971 hybrid contribution 1.575 0.337 0.659 1.740 sum -16.366 -19.754 2.046 25.734 Atomic orbital electron populations 1.21854 0.93567 1.02520 1.01684 1.21630 0.96138 0.96132 0.98719 1.21769 1.01520 0.96419 0.99906 1.20470 0.83113 0.93704 0.95843 0.94263 1.22012 1.02895 0.95447 0.95371 1.21155 0.98286 0.80491 0.99053 1.45729 1.57240 1.12558 1.20020 1.20884 0.79272 0.88076 0.82634 1.90738 1.41845 1.76623 1.36559 1.22123 0.98647 0.89038 0.88174 0.86072 1.22140 0.89919 1.04459 1.04466 1.86343 1.82944 1.17620 1.34483 1.20174 0.93214 0.83834 0.91349 1.21355 1.07391 0.96149 0.98017 1.21857 0.92423 0.92020 0.99930 1.22423 1.03636 1.03355 0.92973 1.23068 0.91912 0.87134 1.00666 1.67219 1.21794 1.13160 1.26091 1.42640 1.01240 1.19783 1.73361 1.19522 0.88903 0.96451 1.29146 0.90706 1.25385 0.97711 1.00119 1.04107 1.69802 1.06188 1.31780 1.54548 0.85305 0.78919 0.79979 0.77123 1.19037 1.23040 1.22333 0.92925 0.92395 0.90845 0.92720 0.93629 0.93075 0.94107 0.87204 0.90832 0.94615 0.92924 0.74283 0.87454 0.90183 0.92021 0.84200 0.81016 0.81020 0.79410 0.79724 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.85 71.98 0.64 -2.49 16 2 C -0.11 -3.32 2.69 -10.80 -0.03 -3.34 16 3 C -0.14 -4.91 8.26 71.98 0.59 -4.32 16 4 C 0.18 6.41 2.02 44.99 0.09 6.50 16 5 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 6 C -0.12 -3.31 4.65 30.60 0.14 -3.17 16 7 C 0.13 4.48 5.56 86.38 0.48 4.96 16 8 N -0.70 -18.58 5.45 -463.08 -2.52 -21.10 16 9 C 0.51 16.40 7.23 87.66 0.63 17.03 16 10 O -0.58 -25.78 16.50 16.03 0.26 -25.51 16 11 C 0.08 2.02 2.90 29.85 0.09 2.10 16 12 H 0.12 2.81 6.99 -2.38 -0.02 2.80 16 13 C -0.15 -2.62 9.43 71.98 0.68 -1.95 16 14 O -0.31 -9.27 9.30 -70.86 -0.66 -9.93 16 15 C 0.29 7.36 7.45 84.79 0.63 7.99 16 16 C -0.21 -4.26 10.04 22.47 0.23 -4.03 16 17 C -0.04 -0.48 10.17 22.45 0.23 -0.25 16 18 C -0.20 -2.18 10.11 22.37 0.23 -1.95 16 19 C 0.13 1.80 11.18 84.63 0.95 2.74 16 20 N -0.56 -11.93 8.65 -308.96 -2.67 -14.61 16 21 N -0.73 -35.24 4.45 -322.93 -1.44 -36.67 16 22 C -0.21 -11.30 7.57 84.04 0.64 -10.67 16 23 H 0.08 3.96 7.40 -2.91 -0.02 3.94 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 25 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 26 Si 0.96 47.74 29.55 68.60 2.03 49.77 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 29 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.33 6.32 -2.39 -0.02 1.31 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.98 6.01 -2.39 -0.01 1.97 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 2.18 6.17 -2.39 -0.01 2.17 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.57 7.75 -2.39 -0.02 1.55 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.42 7.21 7.89 -92.71 -0.73 6.48 16 42 H 0.11 1.17 7.56 -2.39 -0.02 1.16 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 46 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 49 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 50 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -80.63 407.69 1.45 -79.18 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.51 Total: 34.45 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.68 Total: 4.86 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -6.35 Total: -132.81 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.39 Total: -35.44 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -80.63 1.45 -79.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717722577.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.470 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds