Wall clock time and date at job start Tue Mar 31 2020 19:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47015 * 2 1 4 4 C 1.46895 * 111.00190 * 302.20982 * 3 2 1 5 5 C 1.53001 * 109.47180 * 295.96403 * 4 3 2 6 6 C 1.46901 * 110.99937 * 66.16534 * 3 2 1 7 7 C 1.50694 * 109.47301 * 66.04667 * 6 3 2 8 8 C 1.35129 * 125.61695 * 90.00049 * 7 6 3 9 9 C 1.40364 * 107.11544 * 180.02562 * 8 7 6 10 10 C 1.36544 * 106.70779 * 359.97438 * 9 8 7 11 11 C 1.46662 * 125.98465 * 179.97438 * 10 9 8 12 12 O 1.21691 * 120.00288 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99403 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99602 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46967 * 174.71194 * 14 13 11 16 16 N 1.46499 * 115.55285 * 324.13373 * 15 14 13 17 17 C 1.36937 * 119.99664 * 303.42799 * 16 15 14 18 18 H 1.07997 * 120.00459 * 355.11803 * 17 16 15 19 19 C 1.38816 * 120.00029 * 175.11955 * 17 16 15 20 20 N 1.31622 * 119.99955 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47333 * 89.99554 * 21 19 17 23 23 H 1.48502 * 109.47292 * 209.99656 * 21 19 17 24 24 H 1.48499 * 109.47261 * 329.99240 * 21 19 17 25 25 C 1.52998 * 117.49801 * 109.80055 * 15 14 13 26 26 C 1.52997 * 117.50050 * 178.45798 * 15 14 13 27 27 O 1.33934 * 125.61576 * 270.29177 * 7 6 3 28 28 H 1.09001 * 109.47179 * 184.86556 * 1 2 3 29 29 H 1.09003 * 109.47113 * 304.85754 * 1 2 3 30 30 H 1.08996 * 109.47359 * 64.85984 * 1 2 3 31 31 H 1.08994 * 109.47134 * 239.99967 * 2 1 3 32 32 H 1.08999 * 109.46803 * 119.99888 * 2 1 3 33 33 H 1.09003 * 109.47300 * 55.96156 * 4 3 2 34 34 H 1.09000 * 109.47336 * 175.95716 * 4 3 2 35 35 H 1.08996 * 109.47395 * 66.03866 * 5 4 3 36 36 H 1.08997 * 109.46941 * 186.04623 * 5 4 3 37 37 H 1.08999 * 109.46824 * 306.04120 * 5 4 3 38 38 H 1.08997 * 109.47353 * 306.04087 * 6 3 2 39 39 H 1.09005 * 109.47148 * 186.04547 * 6 3 2 40 40 H 1.08002 * 126.44266 * 0.02562 * 8 7 6 41 41 H 1.08005 * 126.64663 * 180.02562 * 9 8 7 42 42 H 0.96993 * 120.00166 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46939 * 54.71781 * 14 13 11 44 44 H 1.08998 * 109.47268 * 294.71756 * 14 13 11 45 45 H 0.97004 * 120.00461 * 123.69649 * 16 15 14 46 46 H 0.97004 * 120.00002 * 180.02562 * 20 19 17 47 47 H 1.09005 * 117.50179 * 215.00473 * 25 15 14 48 48 H 1.09002 * 117.49823 * 0.02562 * 25 15 14 49 49 H 1.09001 * 117.50059 * 359.97438 * 26 15 14 50 50 H 1.08999 * 117.49787 * 144.97105 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5060 2.1250 -1.1603 5 6 2.0519 1.5005 -2.4460 6 6 1.6726 2.0660 1.2545 7 6 2.4154 1.4232 2.3972 8 6 3.6374 1.7867 2.8451 9 6 3.9556 0.9350 3.9145 10 6 2.8982 0.0847 4.0672 11 6 2.7878 -0.9823 5.0673 12 8 3.6932 -1.1710 5.8582 13 7 1.6835 -1.7538 5.1104 14 6 1.5734 -2.8201 6.1091 15 6 0.1822 -3.4518 6.0295 16 7 -0.9136 -2.5299 5.7205 17 6 -1.1324 -1.4359 6.5145 18 1 -0.5488 -1.2946 7.4121 19 6 -2.1044 -0.5083 6.1656 20 7 -2.8154 -0.6800 5.0713 21 14 -2.4024 0.9845 7.2482 22 1 -1.5304 2.1010 6.8029 23 1 -3.8254 1.3958 7.1436 24 1 -2.0882 0.6435 8.6590 25 6 0.0836 -4.8760 5.4793 26 6 -0.1198 -4.6168 6.9741 27 8 1.9755 0.3939 3.1327 28 1 -0.3633 -1.0240 0.0872 29 1 -0.3633 0.5874 0.8433 30 1 -0.3634 0.4366 -0.9303 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4170 2.0785 -1.1679 34 1 1.8247 3.1654 -1.0979 35 1 1.6463 0.4956 -2.5625 36 1 1.7592 2.1118 -3.2996 37 1 3.1393 1.4493 -2.3916 38 1 0.5995 1.9848 1.4272 39 1 1.9510 3.1177 1.1860 40 1 4.2534 2.5829 2.4539 41 1 4.8610 0.9499 4.5031 42 1 0.9620 -1.6037 4.4798 43 1 1.7265 -2.4028 7.1044 44 1 2.3296 -3.5804 5.9137 45 1 -1.4867 -2.6966 4.9558 46 1 -3.4944 -0.0316 4.8273 47 1 -0.7967 -5.1271 4.8875 48 1 1.0098 -5.3631 5.1745 49 1 0.6728 -4.9335 7.6521 50 1 -1.1337 -4.6970 7.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723595482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:12 Heat of formation + Delta-G solvation = 23.958618 kcal Electronic energy + Delta-G solvation = -29994.226906 eV Core-core repulsion = 26024.645190 eV Total energy + Delta-G solvation = -3969.581716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51663 -39.13288 -38.46649 -37.44116 -33.79050 -33.14546 -32.88806 -31.98923 -31.06766 -29.75085 -29.01707 -26.88412 -25.24052 -24.04212 -23.92739 -22.03271 -21.75873 -21.37814 -20.04062 -19.74161 -19.24699 -17.77797 -17.13850 -16.69663 -16.19603 -15.89029 -15.68054 -15.54555 -14.86244 -14.51028 -14.29455 -14.28192 -13.77505 -13.48874 -13.29588 -13.12022 -13.07026 -12.78720 -12.75569 -12.70703 -12.38806 -12.29088 -12.11842 -11.91096 -11.68399 -11.51995 -11.20069 -11.03205 -10.98086 -10.93650 -10.73790 -10.42847 -10.29005 -9.84977 -9.81370 -9.80396 -9.44349 -8.89191 -8.65623 -8.50436 -8.21224 -7.12533 -5.90116 -3.21028 1.29557 2.47705 2.81444 3.36936 3.43244 3.44521 3.54283 3.66287 3.87551 4.39975 4.52850 4.57397 4.78946 4.94214 4.99449 5.08956 5.15104 5.19198 5.22056 5.26426 5.28369 5.31789 5.37505 5.45459 5.46850 5.53263 5.53523 5.73333 5.81219 5.86080 5.88330 5.93576 5.97020 6.01434 6.07125 6.11331 6.19024 6.26524 6.34116 6.43059 6.52603 6.56553 6.75068 6.78271 6.86209 6.89300 7.14296 7.66233 8.03818 8.27352 8.55816 9.39627 9.90516 10.26538 11.31096 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.003827 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.921666 B = 7315.617949 C = 7982.111502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.148 4.148 6 C 0.125 3.875 7 C 0.021 3.979 8 C -0.202 4.202 9 C -0.132 4.132 10 C -0.060 4.060 11 C 0.596 3.404 12 O -0.541 6.541 13 N -0.684 5.684 14 C 0.153 3.847 15 C 0.131 3.869 16 N -0.687 5.687 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.188 4.188 26 C -0.198 4.198 27 O -0.152 6.152 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.416 0.584 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.389 0.611 46 H 0.256 0.744 47 H 0.090 0.910 48 H 0.088 0.912 49 H 0.083 0.917 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.468 2.434 -12.422 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.082 4.082 5 C -0.206 4.206 6 C -0.002 4.002 7 C -0.032 4.032 8 C -0.222 4.222 9 C -0.153 4.153 10 C -0.113 4.113 11 C 0.381 3.619 12 O -0.422 6.422 13 N -0.333 5.333 14 C 0.027 3.973 15 C 0.037 3.963 16 N -0.327 5.327 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.225 4.225 26 C -0.239 4.239 27 O -0.047 6.047 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.254 0.746 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.224 0.776 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.246 2.280 -11.837 15.821 hybrid contribution -1.629 0.973 0.248 1.914 sum 8.617 3.253 -11.589 14.803 Atomic orbital electron populations 1.22390 0.97472 1.03333 1.01884 1.22233 0.93502 0.89461 1.03132 1.62365 1.59370 1.02781 1.01112 1.22123 0.98022 0.97840 0.90214 1.21779 1.02077 1.00823 0.95889 1.20601 0.97974 0.96950 0.84639 1.22392 0.95327 0.90130 0.95364 1.21451 0.96712 1.04208 0.99845 1.21858 0.99360 0.95300 0.98782 1.22175 0.90795 1.02603 0.95746 1.16563 0.83120 0.80027 0.82163 1.90820 1.40154 1.70490 1.40720 1.45713 1.19030 1.32961 1.35629 1.21091 0.95356 0.88715 0.92107 1.20192 0.89151 0.85003 1.01983 1.41843 1.31537 1.25844 1.33454 1.19126 1.15910 0.98353 1.03385 0.91094 1.24714 0.99035 0.98771 0.97609 1.69656 1.25742 1.37182 1.25016 0.86248 0.77081 0.83211 0.80068 1.21607 1.21710 1.20584 1.23192 1.02492 0.99436 0.97412 1.23453 1.02444 1.05955 0.92027 1.84102 1.42055 1.41779 1.36745 0.91512 0.91899 0.92614 0.90360 0.90394 0.93922 0.90758 0.92628 0.92302 0.91743 0.91892 0.87679 0.82990 0.82545 0.74616 0.91175 0.91953 0.77616 0.93427 0.89131 0.89312 0.89879 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.17 37.16 0.34 -1.91 16 2 C 0.04 0.51 5.59 -3.82 -0.02 0.49 16 3 N -0.53 -5.72 4.72 -236.08 -1.11 -6.83 16 4 C 0.05 0.39 5.35 -3.83 -0.02 0.37 16 5 C -0.15 -1.12 9.62 37.16 0.36 -0.77 16 6 C 0.13 1.45 5.34 -4.98 -0.03 1.42 16 7 C 0.02 0.30 5.90 -35.42 -0.21 0.09 16 8 C -0.20 -2.73 10.77 -39.89 -0.43 -3.16 16 9 C -0.13 -2.05 10.62 -39.39 -0.42 -2.47 16 10 C -0.06 -1.08 7.13 -36.79 -0.26 -1.34 16 11 C 0.60 11.68 7.79 -12.86 -0.10 11.58 16 12 O -0.54 -11.52 16.86 5.20 0.09 -11.43 16 13 N -0.68 -13.24 5.21 -61.62 -0.32 -13.56 16 14 C 0.15 2.84 5.52 -4.04 -0.02 2.82 16 15 C 0.13 2.48 2.54 -131.82 -0.34 2.15 16 16 N -0.69 -15.91 4.57 -47.24 -0.22 -16.13 16 17 C -0.24 -6.20 9.45 -15.06 -0.14 -6.34 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 20 N -0.93 -26.32 13.06 55.49 0.72 -25.59 16 21 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.19 -2.98 10.10 -26.70 -0.27 -3.25 16 26 C -0.20 -3.36 10.18 -26.70 -0.27 -3.63 16 27 O -0.15 -2.62 9.59 4.99 0.05 -2.58 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.85 6.24 -51.93 -0.32 0.52 16 30 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.08 0.81 6.65 -51.93 -0.35 0.46 16 32 H 0.08 1.06 6.49 -51.93 -0.34 0.73 16 33 H 0.04 0.37 6.15 -51.93 -0.32 0.06 16 34 H 0.07 0.56 7.97 -51.93 -0.41 0.14 16 35 H 0.05 0.44 6.86 -51.93 -0.36 0.08 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.78 6.14 -51.93 -0.32 0.46 16 39 H 0.11 0.97 7.96 -51.93 -0.41 0.55 16 40 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.16 2.20 8.06 -52.48 -0.42 1.78 16 42 H 0.42 8.45 7.54 -40.82 -0.31 8.14 16 43 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 44 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 45 H 0.39 9.57 8.03 -40.82 -0.33 9.25 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 49 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 50 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 407.25 15.07 6.14 6.14 Total: -1.00 -29.56 407.25 -9.59 -39.14 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -7.98 Total: 17.97 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.93 Total: -4.18 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.93 Total: -62.11 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.14 Total: -14.01 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.56 -9.59 -39.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723595482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.102 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds