Wall clock time and date at job start Tue Mar 31 2020 19:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47015 * 2 1 4 4 C 1.46895 * 111.00190 * 302.20982 * 3 2 1 5 5 C 1.53001 * 109.47180 * 295.96403 * 4 3 2 6 6 C 1.46901 * 110.99937 * 66.16534 * 3 2 1 7 7 C 1.50694 * 109.47301 * 66.04667 * 6 3 2 8 8 C 1.35129 * 125.61695 * 90.00049 * 7 6 3 9 9 C 1.40364 * 107.11544 * 180.02562 * 8 7 6 10 10 C 1.36544 * 106.70779 * 359.97438 * 9 8 7 11 11 C 1.46662 * 125.98465 * 179.97438 * 10 9 8 12 12 O 1.21691 * 120.00288 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99403 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99602 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46967 * 174.71194 * 14 13 11 16 16 N 1.46499 * 115.55285 * 324.13373 * 15 14 13 17 17 C 1.36937 * 119.99664 * 303.42799 * 16 15 14 18 18 H 1.07997 * 120.00459 * 355.11803 * 17 16 15 19 19 C 1.38816 * 120.00029 * 175.11955 * 17 16 15 20 20 N 1.31622 * 119.99955 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47333 * 89.99554 * 21 19 17 23 23 H 1.48502 * 109.47292 * 209.99656 * 21 19 17 24 24 H 1.48499 * 109.47261 * 329.99240 * 21 19 17 25 25 C 1.52998 * 117.49801 * 109.80055 * 15 14 13 26 26 C 1.52997 * 117.50050 * 178.45798 * 15 14 13 27 27 O 1.33934 * 125.61576 * 270.29177 * 7 6 3 28 28 H 1.09001 * 109.47179 * 184.86556 * 1 2 3 29 29 H 1.09003 * 109.47113 * 304.85754 * 1 2 3 30 30 H 1.08996 * 109.47359 * 64.85984 * 1 2 3 31 31 H 1.08994 * 109.47134 * 239.99967 * 2 1 3 32 32 H 1.08999 * 109.46803 * 119.99888 * 2 1 3 33 33 H 1.09003 * 109.47300 * 55.96156 * 4 3 2 34 34 H 1.09000 * 109.47336 * 175.95716 * 4 3 2 35 35 H 1.08996 * 109.47395 * 66.03866 * 5 4 3 36 36 H 1.08997 * 109.46941 * 186.04623 * 5 4 3 37 37 H 1.08999 * 109.46824 * 306.04120 * 5 4 3 38 38 H 1.08997 * 109.47353 * 306.04087 * 6 3 2 39 39 H 1.09005 * 109.47148 * 186.04547 * 6 3 2 40 40 H 1.08002 * 126.44266 * 0.02562 * 8 7 6 41 41 H 1.08005 * 126.64663 * 180.02562 * 9 8 7 42 42 H 0.96993 * 120.00166 * 0.02562 * 13 11 10 43 43 H 1.09001 * 109.46939 * 54.71781 * 14 13 11 44 44 H 1.08998 * 109.47268 * 294.71756 * 14 13 11 45 45 H 0.97004 * 120.00461 * 123.69649 * 16 15 14 46 46 H 0.97004 * 120.00002 * 180.02562 * 20 19 17 47 47 H 1.09005 * 117.50179 * 215.00473 * 25 15 14 48 48 H 1.09002 * 117.49823 * 0.02562 * 25 15 14 49 49 H 1.09001 * 117.50059 * 359.97438 * 26 15 14 50 50 H 1.08999 * 117.49787 * 144.97105 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5060 2.1250 -1.1603 5 6 2.0519 1.5005 -2.4460 6 6 1.6726 2.0660 1.2545 7 6 2.4154 1.4232 2.3972 8 6 3.6374 1.7867 2.8451 9 6 3.9556 0.9350 3.9145 10 6 2.8982 0.0847 4.0672 11 6 2.7878 -0.9823 5.0673 12 8 3.6932 -1.1710 5.8582 13 7 1.6835 -1.7538 5.1104 14 6 1.5734 -2.8201 6.1091 15 6 0.1822 -3.4518 6.0295 16 7 -0.9136 -2.5299 5.7205 17 6 -1.1324 -1.4359 6.5145 18 1 -0.5488 -1.2946 7.4121 19 6 -2.1044 -0.5083 6.1656 20 7 -2.8154 -0.6800 5.0713 21 14 -2.4024 0.9845 7.2482 22 1 -1.5304 2.1010 6.8029 23 1 -3.8254 1.3958 7.1436 24 1 -2.0882 0.6435 8.6590 25 6 0.0836 -4.8760 5.4793 26 6 -0.1198 -4.6168 6.9741 27 8 1.9755 0.3939 3.1327 28 1 -0.3633 -1.0240 0.0872 29 1 -0.3633 0.5874 0.8433 30 1 -0.3634 0.4366 -0.9303 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.4170 2.0785 -1.1679 34 1 1.8247 3.1654 -1.0979 35 1 1.6463 0.4956 -2.5625 36 1 1.7592 2.1118 -3.2996 37 1 3.1393 1.4493 -2.3916 38 1 0.5995 1.9848 1.4272 39 1 1.9510 3.1177 1.1860 40 1 4.2534 2.5829 2.4539 41 1 4.8610 0.9499 4.5031 42 1 0.9620 -1.6037 4.4798 43 1 1.7265 -2.4028 7.1044 44 1 2.3296 -3.5804 5.9137 45 1 -1.4867 -2.6966 4.9558 46 1 -3.4944 -0.0316 4.8273 47 1 -0.7967 -5.1271 4.8875 48 1 1.0098 -5.3631 5.1745 49 1 0.6728 -4.9335 7.6521 50 1 -1.1337 -4.6970 7.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723595482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:11 Heat of formation + Delta-G solvation = 4.836653 kcal Electronic energy + Delta-G solvation = -29995.056096 eV Core-core repulsion = 26024.645190 eV Total energy + Delta-G solvation = -3970.410907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.73102 -40.62902 -39.35428 -38.96071 -35.27474 -35.06542 -34.10917 -32.90050 -31.99119 -31.65692 -30.11527 -28.16115 -26.35502 -25.93483 -24.87636 -23.32660 -23.05764 -22.52455 -21.24442 -20.77537 -20.76676 -19.30483 -19.02114 -17.78188 -17.48667 -17.00566 -16.88000 -16.70962 -16.38752 -15.99584 -15.82132 -15.46976 -15.19066 -15.02289 -14.74304 -14.29229 -14.08833 -13.94806 -13.87995 -13.86174 -13.64484 -13.58723 -13.06470 -12.97227 -12.95285 -12.90221 -12.56310 -12.31617 -12.30392 -12.21171 -12.01928 -11.98317 -11.79807 -11.58096 -11.41018 -11.00467 -10.99306 -10.68834 -10.11099 -9.58030 -9.30185 -9.03006 -7.98544 -5.26930 0.00171 1.33459 1.40231 1.42401 1.48810 1.61303 2.11912 2.25201 2.49697 2.98510 3.03398 3.38950 3.51311 3.60628 3.83419 3.85302 3.96900 4.00440 4.12314 4.13976 4.21373 4.32323 4.38776 4.39500 4.44900 4.52826 4.60825 4.67726 4.69675 4.80265 4.81059 4.83766 4.84367 4.93126 4.98532 5.00435 5.11130 5.12182 5.15064 5.22919 5.35191 5.40073 5.42790 5.44307 5.54569 5.86609 5.96152 6.06370 6.23579 6.50567 7.02453 7.30952 8.00667 8.26120 9.23040 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.003827 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.921666 B = 7315.617949 C = 7982.111502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.043 3.957 5 C -0.145 4.145 6 C 0.125 3.875 7 C 0.020 3.980 8 C -0.196 4.196 9 C -0.121 4.121 10 C -0.101 4.101 11 C 0.593 3.407 12 O -0.566 6.566 13 N -0.687 5.687 14 C 0.158 3.842 15 C 0.099 3.901 16 N -0.695 5.695 17 C -0.222 4.222 18 H 0.063 0.937 19 C -0.057 4.057 20 N -0.956 5.956 21 Si 0.952 3.048 22 H -0.294 1.294 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.160 4.160 26 C -0.188 4.188 27 O -0.173 6.173 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.136 0.864 40 H 0.188 0.812 41 H 0.169 0.831 42 H 0.410 0.590 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.379 0.621 46 H 0.250 0.750 47 H 0.090 0.910 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.825 2.922 -13.598 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.079 4.079 3 N -0.256 5.256 4 C -0.084 4.084 5 C -0.202 4.202 6 C -0.002 4.002 7 C -0.033 4.033 8 C -0.215 4.215 9 C -0.141 4.141 10 C -0.154 4.154 11 C 0.380 3.620 12 O -0.449 6.449 13 N -0.335 5.335 14 C 0.032 3.968 15 C 0.007 3.993 16 N -0.333 5.333 17 C -0.354 4.354 18 H 0.081 0.919 19 C -0.250 4.250 20 N -0.606 5.606 21 Si 0.782 3.218 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.201 1.201 25 C -0.197 4.197 26 C -0.229 4.229 27 O -0.069 6.069 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.154 0.846 40 H 0.205 0.795 41 H 0.187 0.813 42 H 0.247 0.753 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.212 0.788 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.137 0.863 49 H 0.126 0.874 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.632 2.735 -12.990 17.650 hybrid contribution -1.995 0.795 0.560 2.219 sum 9.637 3.530 -12.429 16.119 Atomic orbital electron populations 1.22327 0.97822 1.02513 1.01783 1.22147 0.93068 0.90219 1.02478 1.62407 1.59317 1.02401 1.01441 1.22252 0.97984 0.98557 0.89575 1.21758 1.01741 1.00834 0.95870 1.20790 0.96966 0.98265 0.84177 1.23127 0.95909 0.88950 0.95274 1.21814 0.96539 1.04403 0.98774 1.22184 0.98816 0.94393 0.98751 1.22004 0.92330 1.03941 0.97077 1.16812 0.82673 0.80226 0.82265 1.90781 1.40780 1.71443 1.41901 1.45763 1.18827 1.33336 1.35576 1.21100 0.95663 0.88933 0.91072 1.20438 0.88000 0.85639 1.05243 1.41826 1.32682 1.26060 1.32762 1.19221 1.14556 0.98774 1.02865 0.91941 1.25256 0.99803 1.01038 0.98900 1.69763 1.26595 1.37865 1.26418 0.85470 0.76531 0.80764 0.79034 1.22150 1.21862 1.20081 1.23284 1.03849 0.96121 0.96474 1.23442 1.02498 1.03763 0.93206 1.84086 1.42588 1.43045 1.37194 0.92363 0.94096 0.90847 0.88980 0.92985 0.94084 0.89047 0.93090 0.90677 0.92074 0.93193 0.84618 0.79491 0.81347 0.75347 0.92995 0.89662 0.78763 0.94050 0.89170 0.86302 0.87400 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.39 9.17 71.98 0.66 -3.73 16 2 C 0.05 1.11 5.59 86.30 0.48 1.59 16 3 N -0.53 -10.57 4.72 -900.82 -4.25 -14.82 16 4 C 0.04 0.64 5.35 86.30 0.46 1.10 16 5 C -0.14 -1.84 9.62 71.98 0.69 -1.15 16 6 C 0.13 2.71 5.34 85.55 0.46 3.17 16 7 C 0.02 0.56 5.90 24.97 0.15 0.71 16 8 C -0.20 -4.89 10.77 22.07 0.24 -4.65 16 9 C -0.12 -3.64 10.62 22.39 0.24 -3.40 16 10 C -0.10 -3.68 7.13 24.07 0.17 -3.51 16 11 C 0.59 23.83 7.79 86.44 0.67 24.50 16 12 O -0.57 -24.49 16.86 -4.32 -0.07 -24.56 16 13 N -0.69 -27.27 5.21 -467.09 -2.43 -29.70 16 14 C 0.16 5.83 5.52 86.38 0.48 6.31 16 15 C 0.10 3.71 2.54 3.60 0.01 3.72 16 16 N -0.69 -32.70 4.57 -303.36 -1.39 -34.08 16 17 C -0.22 -11.84 9.45 84.03 0.79 -11.05 16 18 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 19 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 20 N -0.96 -55.57 13.06 21.65 0.28 -55.29 16 21 Si 0.95 46.13 29.55 68.60 2.03 48.16 16 22 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 25 C -0.16 -4.75 10.10 30.62 0.31 -4.45 16 26 C -0.19 -6.09 10.18 30.62 0.31 -5.78 16 27 O -0.17 -6.14 9.59 -5.05 -0.05 -6.19 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.14 6.24 -2.39 -0.01 1.12 16 30 H 0.07 1.44 6.56 -2.39 -0.02 1.43 16 31 H 0.09 1.81 6.65 -2.39 -0.02 1.80 16 32 H 0.05 1.46 6.49 -2.39 -0.02 1.44 16 33 H 0.04 0.64 6.15 -2.39 -0.01 0.62 16 34 H 0.09 1.07 7.97 -2.39 -0.02 1.05 16 35 H 0.05 0.69 6.86 -2.39 -0.02 0.68 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 1.23 6.14 -2.39 -0.01 1.22 16 39 H 0.14 2.09 7.96 -2.38 -0.02 2.07 16 40 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 42 H 0.41 17.34 7.54 -92.71 -0.70 16.64 16 43 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 44 H 0.09 2.73 7.91 -2.39 -0.02 2.71 16 45 H 0.38 19.13 8.03 -92.70 -0.74 18.38 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 47 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 48 H 0.12 2.86 8.06 -2.39 -0.02 2.84 16 49 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 50 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -65.21 407.25 0.23 -64.99 By element: Atomic # 1 Polarization: 51.29 SS G_CDS: -0.48 Total: 50.80 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.59 Total: 0.69 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -7.79 Total: -133.89 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.12 Total: -30.75 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -65.21 0.23 -64.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723595482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.822 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds