Wall clock time and date at job start Tue Mar 31 2020 19:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47335 * 2 1 4 4 C 1.36449 * 124.84815 * 264.97494 * 3 2 1 5 5 C 1.34490 * 108.85366 * 180.02562 * 4 3 2 6 6 C 1.46686 * 106.33410 * 359.97438 * 5 4 3 7 7 C 1.47266 * 126.94248 * 179.97438 * 6 5 4 8 8 O 1.21626 * 120.00047 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99954 * 0.03385 * 7 6 5 10 10 C 1.46505 * 119.99845 * 185.08478 * 9 7 6 11 11 C 1.52997 * 109.49597 * 298.14528 * 10 9 7 12 12 O 1.42907 * 109.47010 * 305.57862 * 11 10 9 13 13 C 1.53041 * 109.49595 * 58.21043 * 10 9 7 14 14 C 1.53036 * 109.53902 * 58.62093 * 13 10 9 15 15 C 1.53189 * 109.34364 * 61.34349 * 14 13 10 16 16 N 1.46928 * 108.77255 * 305.41810 * 15 14 13 17 17 C 1.36936 * 120.60183 * 233.53082 * 16 15 14 18 18 H 1.08002 * 120.00349 * 29.95323 * 17 16 15 19 19 C 1.38819 * 119.99559 * 209.95553 * 17 16 15 20 20 N 1.31616 * 120.00282 * 11.94357 * 19 17 16 21 21 Si 1.86802 * 119.99511 * 191.94389 * 19 17 16 22 22 H 1.48505 * 109.47405 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47295 * 120.00178 * 21 19 17 24 24 H 1.48503 * 109.46809 * 239.99739 * 21 19 17 25 25 C 1.46923 * 118.76579 * 53.55368 * 16 15 14 26 26 C 1.34660 * 124.85064 * 85.28686 * 3 2 1 27 27 C 1.50701 * 125.80485 * 0.02562 * 26 3 2 28 28 H 1.08993 * 109.47034 * 59.99465 * 1 2 3 29 29 H 1.08995 * 109.47483 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46769 * 300.00059 * 1 2 3 31 31 H 1.09001 * 109.46649 * 239.99549 * 2 1 3 32 32 H 1.09007 * 109.47026 * 120.00462 * 2 1 3 33 33 H 1.07998 * 125.57331 * 0.04266 * 4 3 2 34 34 H 1.08002 * 126.83516 * 179.97438 * 5 4 3 35 35 H 0.96999 * 120.00396 * 5.08108 * 9 7 6 36 36 H 1.08997 * 109.47175 * 65.57821 * 11 10 9 37 37 H 1.09002 * 109.47025 * 185.58310 * 11 10 9 38 38 H 0.96705 * 113.99588 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.45782 * 298.59389 * 13 10 9 40 40 H 1.09002 * 109.45696 * 178.63658 * 13 10 9 41 41 H 1.09001 * 109.49810 * 181.31945 * 14 13 10 42 42 H 1.09008 * 109.49530 * 301.37736 * 14 13 10 43 43 H 1.09006 * 109.58030 * 65.16681 * 15 14 13 44 44 H 1.08996 * 109.58830 * 185.59197 * 15 14 13 45 45 H 0.97008 * 119.99845 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58986 * 186.62525 * 25 16 15 47 47 H 1.09001 * 109.59201 * 66.19628 * 25 16 15 48 48 H 1.08996 * 109.46524 * 270.16095 * 27 26 3 49 49 H 1.09007 * 109.46712 * 30.15495 * 27 26 3 50 50 H 1.08996 * 109.46948 * 150.15608 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3708 2.0835 -1.1155 5 6 2.7717 3.3131 -0.7463 6 6 2.6532 3.3642 0.7149 7 6 2.9757 4.5041 1.5897 8 8 2.8295 4.4075 2.7933 9 7 3.4328 5.6544 1.0566 10 6 3.8589 6.7490 1.9322 11 6 2.6723 7.2201 2.7752 12 8 1.5810 7.5560 1.9159 13 6 4.9782 6.2596 2.8540 14 6 6.1528 5.7577 2.0111 15 6 6.6961 6.9102 1.1606 16 7 5.5917 7.4818 0.3781 17 6 5.6940 7.6103 -0.9814 18 1 6.2954 6.9131 -1.5460 19 6 5.0247 8.6366 -1.6338 20 7 4.4888 9.6183 -0.9401 21 14 4.8849 8.6244 -3.4966 22 1 5.5672 7.4209 -4.0364 23 1 3.4519 8.5977 -3.8852 24 1 5.5248 9.8453 -4.0490 25 6 4.3761 7.9134 1.0814 26 6 2.1893 2.1369 1.1013 27 6 1.9133 1.7050 2.5185 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3336 1.7128 -2.1292 34 1 3.1130 4.1052 -1.3963 35 1 3.4797 5.7576 0.0933 36 1 2.3687 6.4223 3.4531 37 1 2.9628 8.0973 3.3534 38 1 0.7922 7.8631 2.3836 39 1 4.6056 5.4472 3.4779 40 1 5.3114 7.0809 3.4884 41 1 6.9400 5.3876 2.6679 42 1 5.8146 4.9523 1.3589 43 1 7.1177 7.6768 1.8109 44 1 7.4665 6.5355 0.4868 45 1 4.0208 10.3353 -1.3960 46 1 3.6160 8.2008 0.3549 47 1 4.6081 8.7616 1.7255 48 1 0.8802 1.9394 2.7749 49 1 2.0754 0.6309 2.6091 50 1 2.5846 2.2323 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724634668.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:56 Heat of formation + Delta-G solvation = -39.271236 kcal Electronic energy + Delta-G solvation = -31290.861758 eV Core-core repulsion = 27318.538190 eV Total energy + Delta-G solvation = -3972.323568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29883 -41.01421 -38.62447 -37.32857 -35.30662 -34.94831 -34.07710 -32.45347 -32.02863 -31.46333 -29.91274 -27.31930 -27.19393 -26.59387 -24.78161 -23.95794 -23.16251 -22.21892 -21.18448 -19.89971 -19.71804 -18.72426 -18.29074 -18.13739 -17.16417 -16.62137 -16.29358 -16.21439 -15.84451 -15.65347 -15.54813 -15.11199 -14.91042 -14.64899 -14.45191 -14.20745 -14.14252 -13.91805 -13.89047 -13.69255 -13.59513 -13.45298 -12.99635 -12.94490 -12.82239 -12.72968 -12.70320 -12.51525 -12.35160 -12.17063 -12.07725 -11.92526 -11.65657 -11.44236 -11.17768 -11.00359 -10.52828 -10.25875 -9.72916 -9.41952 -9.01263 -8.60493 -7.81478 -5.31063 0.89186 1.48279 1.50398 1.56549 1.60103 1.94086 2.53479 2.66138 2.76855 3.33699 3.40705 3.70606 3.84310 3.87831 4.03054 4.11959 4.14696 4.16153 4.28422 4.31760 4.39963 4.45053 4.46041 4.52559 4.63612 4.67870 4.74331 4.84669 4.85502 4.88642 4.90331 4.96884 4.99718 5.06657 5.13808 5.14367 5.22745 5.25011 5.36072 5.38146 5.52960 5.66259 5.79306 5.86162 5.92555 6.19455 6.44697 6.46324 6.96024 6.98626 7.18874 7.60647 7.88158 8.42310 9.23751 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.004320 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.814713 B = 6479.567056 C = 7574.702677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 N -0.437 5.437 4 C -0.007 4.007 5 C -0.193 4.193 6 C -0.269 4.269 7 C 0.588 3.412 8 O -0.585 6.585 9 N -0.684 5.684 10 C 0.160 3.840 11 C 0.076 3.924 12 O -0.579 6.579 13 C -0.113 4.113 14 C -0.115 4.115 15 C 0.141 3.859 16 N -0.603 5.603 17 C -0.258 4.258 18 H 0.066 0.934 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.292 1.292 24 H -0.294 1.294 25 C 0.192 3.808 26 C 0.099 3.901 27 C -0.083 4.083 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.197 0.803 34 H 0.133 0.867 35 H 0.397 0.603 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.386 0.614 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.054 0.946 45 H 0.248 0.752 46 H 0.070 0.930 47 H 0.004 0.996 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 -20.134 4.508 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.030 4.030 3 N -0.113 5.113 4 C -0.133 4.133 5 C -0.217 4.217 6 C -0.279 4.279 7 C 0.379 3.621 8 O -0.470 6.470 9 N -0.331 5.331 10 C 0.072 3.928 11 C -0.003 4.003 12 O -0.385 6.385 13 C -0.152 4.152 14 C -0.154 4.154 15 C 0.016 3.984 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.222 1.222 25 C 0.066 3.934 26 C -0.019 4.019 27 C -0.140 4.140 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.214 0.786 34 H 0.151 0.849 35 H 0.231 0.769 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.022 0.978 48 H 0.095 0.905 49 H 0.107 0.893 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.225 -20.575 4.765 22.321 hybrid contribution -0.366 1.273 -1.093 1.718 sum -7.592 -19.302 3.672 21.063 Atomic orbital electron populations 1.22145 0.93713 1.04176 1.02333 1.22234 0.96036 0.78467 1.06308 1.43973 1.49454 1.13057 1.04817 1.22044 1.06388 0.92360 0.92544 1.22162 1.07769 0.98516 0.93217 1.20346 1.17785 0.95555 0.94185 1.17594 0.75575 0.81990 0.86951 1.90546 1.57048 1.83732 1.15635 1.45546 1.63968 1.13602 1.09979 1.21026 0.92367 0.88347 0.91073 1.22517 0.87226 0.98404 0.92144 1.86541 1.25658 1.88675 1.37671 1.21673 0.94850 1.01205 0.97428 1.21778 0.97386 0.98107 0.98140 1.21074 0.90275 0.93523 0.93516 1.44199 1.12502 1.72705 1.03209 1.19463 1.28573 1.07482 0.83277 0.91642 1.25791 1.01621 0.94850 1.01650 1.70138 1.40752 1.11394 1.35373 0.85270 0.76995 0.77455 0.81122 1.18883 1.21934 1.22165 1.20653 0.89165 0.90089 0.93489 1.20454 1.00548 0.90301 0.90621 1.20471 1.03034 1.02087 0.88381 0.92664 0.88236 0.93031 0.86691 0.87794 0.78596 0.84941 0.76921 0.92107 0.93155 0.76595 0.90918 0.91442 0.90458 0.93602 0.96541 0.92748 0.94265 0.91222 0.97814 0.90508 0.89259 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 71.98 0.74 -0.95 16 2 C 0.09 1.00 6.46 86.38 0.56 1.56 16 3 N -0.44 -9.25 2.69 -509.90 -1.37 -10.62 16 4 C -0.01 -0.16 11.33 83.12 0.94 0.78 16 5 C -0.19 -6.07 10.56 23.62 0.25 -5.82 16 6 C -0.27 -9.32 6.29 -19.04 -0.12 -9.44 16 7 C 0.59 23.21 7.18 86.62 0.62 23.83 16 8 O -0.59 -23.78 11.13 -4.11 -0.05 -23.82 16 9 N -0.68 -28.51 3.93 -425.94 -1.68 -30.18 16 10 C 0.16 6.69 0.45 3.68 0.00 6.69 16 11 C 0.08 2.91 5.65 71.98 0.41 3.32 16 12 O -0.58 -22.47 13.08 -148.98 -1.95 -24.42 16 13 C -0.11 -4.29 4.45 30.62 0.14 -4.16 16 14 C -0.12 -4.32 5.93 30.67 0.18 -4.14 16 15 C 0.14 6.09 6.52 86.36 0.56 6.66 16 16 N -0.60 -30.52 2.91 -699.08 -2.03 -32.55 16 17 C -0.26 -14.08 9.59 84.04 0.81 -13.27 16 18 H 0.07 3.51 7.86 -2.91 -0.02 3.48 16 19 C -0.04 -2.41 5.03 84.86 0.43 -1.99 16 20 N -0.93 -55.32 11.02 21.65 0.24 -55.08 16 21 Si 0.96 45.06 29.57 68.60 2.03 47.09 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 C 0.19 9.60 3.82 86.36 0.33 9.93 16 26 C 0.10 2.72 6.89 41.78 0.29 3.01 16 27 C -0.08 -1.87 9.51 71.24 0.68 -1.19 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.11 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.10 0.87 7.04 -2.38 -0.02 0.86 16 33 H 0.20 3.09 8.06 -2.91 -0.02 3.06 16 34 H 0.13 4.41 7.71 -2.91 -0.02 4.38 16 35 H 0.40 17.90 7.61 -92.71 -0.71 17.19 16 36 H 0.06 2.31 6.31 -2.39 -0.02 2.30 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.39 10.78 9.12 -74.05 -0.68 10.11 16 39 H 0.07 2.77 6.26 -2.39 -0.01 2.76 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 1.85 7.49 -2.38 -0.02 1.83 16 43 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 46 H 0.07 4.00 5.89 -2.38 -0.01 3.98 16 47 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 48 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 1.38 7.02 -2.38 -0.02 1.36 16 50 H 0.08 2.17 6.47 -2.39 -0.02 2.16 16 Total: -1.00 -72.48 390.01 1.58 -70.90 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.42 Total: 43.87 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.81 Total: 14.81 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -4.84 Total: -128.43 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.99 Total: -48.24 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.48 1.58 -70.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724634668.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.633 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds