Wall clock time and date at job start Tue Mar 31 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.52997 * 109.47194 * 120.00356 * 2 1 3 5 5 N 1.46500 * 109.47225 * 174.99927 * 4 2 1 6 6 C 1.46498 * 119.99733 * 269.99680 * 5 4 2 7 7 C 1.34776 * 120.00399 * 89.99620 * 5 4 2 8 8 O 1.21619 * 119.99400 * 3.23096 * 7 5 4 9 9 C 1.47408 * 120.00316 * 183.23656 * 7 5 4 10 10 C 1.36093 * 126.45024 * 173.43478 * 9 7 5 11 11 O 1.34262 * 106.95083 * 180.24029 * 10 9 7 12 12 C 1.34055 * 108.22624 * 359.57180 * 11 10 9 13 13 C 1.50696 * 125.37966 * 180.13728 * 12 11 10 14 14 C 1.52998 * 109.47449 * 60.34861 * 13 12 11 15 15 C 1.52997 * 109.47142 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47278 * 59.99740 * 15 14 13 17 17 C 1.52994 * 109.47585 * 299.99790 * 16 15 14 18 18 C 1.53006 * 109.46874 * 60.00164 * 17 16 15 19 19 N 1.29940 * 109.23858 * 0.43582 * 12 11 10 20 20 N 1.46499 * 109.46556 * 239.99928 * 2 1 3 21 21 C 1.36938 * 119.99945 * 85.00254 * 20 2 1 22 22 H 1.07998 * 120.00426 * 359.97438 * 21 20 2 23 23 C 1.38816 * 119.99850 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00111 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99763 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46970 * 89.99945 * 25 23 21 27 27 H 1.48501 * 109.47044 * 209.99968 * 25 23 21 28 28 H 1.48503 * 109.47421 * 330.00041 * 25 23 21 29 29 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46761 * 299.99706 * 1 2 3 31 31 H 1.09002 * 109.47482 * 59.99532 * 1 2 3 32 32 H 1.09001 * 109.47116 * 54.99412 * 4 2 1 33 33 H 1.09001 * 109.46851 * 294.99783 * 4 2 1 34 34 H 1.08999 * 109.47167 * 264.06431 * 6 5 4 35 35 H 1.09002 * 109.47237 * 24.06830 * 6 5 4 36 36 H 1.09000 * 109.47064 * 144.06101 * 6 5 4 37 37 H 1.07998 * 126.52454 * 359.96755 * 10 9 7 38 38 H 1.08997 * 109.47069 * 180.35387 * 13 12 11 39 39 H 1.09004 * 109.46781 * 300.00398 * 14 13 12 40 40 H 1.08998 * 109.47062 * 59.99782 * 14 13 12 41 41 H 1.09009 * 109.46833 * 299.99563 * 15 14 13 42 42 H 1.09000 * 109.47036 * 180.02562 * 15 14 13 43 43 H 1.09009 * 109.46891 * 179.97438 * 16 15 14 44 44 H 1.09001 * 109.47483 * 60.00395 * 16 15 14 45 45 H 1.09001 * 109.47205 * 300.00776 * 17 16 15 46 46 H 1.08998 * 109.47386 * 179.97438 * 17 16 15 47 47 H 1.08995 * 109.47618 * 180.02562 * 18 17 16 48 48 H 1.08997 * 109.47039 * 59.99645 * 18 17 16 49 49 H 0.96996 * 120.00246 * 264.99728 * 20 2 1 50 50 H 0.97006 * 120.00106 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5611 7 6 4.2677 0.1491 1.7155 8 8 3.7496 1.0877 2.2897 9 6 5.7350 0.0785 1.5935 10 6 6.6240 1.0416 1.9597 11 8 7.8491 0.5730 1.6728 12 6 7.7168 -0.6546 1.1508 13 6 8.8511 -1.5358 0.6949 14 6 9.7788 -1.8253 1.8766 15 6 10.9307 -2.7194 1.4135 16 6 11.7167 -2.0081 0.3104 17 6 10.7891 -1.7187 -0.8714 18 6 9.6372 -0.8244 -0.4083 19 7 6.4556 -0.9622 1.0943 20 7 2.0182 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8918 1.0403 -2.4244 23 6 2.6121 -0.6618 -3.5091 24 7 2.9250 -1.9388 -3.4500 25 14 2.7898 0.2699 -5.1184 26 1 4.1516 0.8559 -5.2033 27 1 2.5799 -0.6618 -6.2555 28 1 1.7790 1.3564 -5.1756 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 4.3782 -2.7262 1.3261 35 1 3.4320 -2.4354 -0.1532 36 1 5.0325 -1.6816 0.0420 37 1 6.3887 2.0021 2.3939 38 1 8.4505 -2.4732 0.3092 39 1 10.1793 -0.8878 2.2622 40 1 9.2186 -2.3317 2.6627 41 1 10.5303 -3.6571 1.0276 42 1 11.5913 -2.9261 2.2555 43 1 12.5377 -2.6450 -0.0192 44 1 12.1171 -1.0706 0.6962 45 1 10.3888 -2.6562 -1.2572 46 1 11.3491 -1.2115 -1.6571 47 1 8.9760 -0.6185 -1.2500 48 1 10.0375 0.1130 -0.0224 49 1 2.2489 -1.6318 -1.1527 50 1 3.2482 -2.3962 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725523284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:23 Heat of formation + Delta-G solvation = -10.946287 kcal Electronic energy + Delta-G solvation = -30019.816961 eV Core-core repulsion = 26048.721654 eV Total energy + Delta-G solvation = -3971.095306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.38854 -39.36548 -38.69775 -36.27031 -34.95505 -33.91423 -32.48105 -31.90822 -31.06635 -29.19068 -28.75064 -26.74547 -25.90184 -23.83517 -23.80432 -22.89513 -22.88874 -21.27192 -20.39197 -19.85600 -18.99507 -17.36201 -17.21418 -16.70103 -16.37912 -15.92684 -15.58254 -15.02786 -14.72832 -14.53859 -14.46137 -14.44585 -13.92885 -13.52678 -13.41999 -13.16994 -12.88239 -12.77196 -12.50197 -12.36531 -12.17172 -12.03451 -11.86522 -11.54131 -11.45811 -11.36661 -11.27200 -11.13839 -10.84281 -10.83259 -10.66274 -10.60388 -10.45637 -10.41904 -10.17543 -9.98400 -9.71720 -9.52051 -8.93065 -8.88549 -8.03914 -6.89764 -5.73115 -2.99693 1.23607 2.15134 2.60998 3.33201 3.44799 3.50458 3.51653 3.63553 3.80670 4.39711 4.44368 4.58271 4.62812 4.79615 4.89728 4.94161 5.01333 5.14425 5.15432 5.20666 5.33844 5.44910 5.51202 5.59927 5.64125 5.68278 5.69321 5.74537 5.81000 5.84369 5.84840 5.86356 5.92570 5.99817 6.01755 6.09841 6.15309 6.15736 6.20612 6.32565 6.42235 6.67466 6.83135 6.89925 6.97995 7.20631 7.57846 7.74850 7.84239 8.46129 8.50904 9.57389 10.14145 10.50006 11.49839 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.003624 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.999174 B = 7724.415687 C = 9498.542695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.050 0.950 4 C 0.109 3.891 5 N -0.574 5.574 6 C 0.082 3.918 7 C 0.597 3.403 8 O -0.553 6.553 9 C -0.055 4.055 10 C 0.000 4.000 11 O -0.196 6.196 12 C 0.195 3.805 13 C 0.012 3.988 14 C -0.115 4.115 15 C -0.118 4.118 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.118 4.118 19 N -0.445 5.445 20 N -0.720 5.720 21 C -0.231 4.231 22 H 0.067 0.933 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.902 3.098 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.228 0.772 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.382 0.618 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.930 -1.492 12.101 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.015 4.015 5 N -0.303 5.303 6 C -0.061 4.061 7 C 0.384 3.616 8 O -0.432 6.432 9 C -0.175 4.175 10 C -0.073 4.073 11 O -0.083 6.083 12 C -0.013 4.013 13 C -0.008 4.008 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.156 4.156 18 C -0.156 4.156 19 N -0.175 5.175 20 N -0.363 5.363 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.583 5.583 25 Si 0.734 3.266 26 H -0.220 1.220 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.244 0.756 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.412 -1.484 12.010 19.595 hybrid contribution 0.209 0.858 -0.864 1.235 sum 15.620 -0.627 11.145 19.199 Atomic orbital electron populations 1.22366 0.98711 1.00870 1.00268 1.20657 0.92044 0.96198 0.86739 0.93169 1.21924 0.78520 1.01427 0.99579 1.47420 1.06513 1.20989 1.55356 1.22202 1.00555 0.86331 0.96992 1.16764 0.83462 0.82390 0.78974 1.90762 1.73597 1.33747 1.45116 1.21835 0.96136 0.92782 1.06761 1.25185 0.80137 1.00784 1.01241 1.84326 1.32237 1.30320 1.61370 1.26417 0.94428 0.82993 0.97486 1.19828 0.88784 0.95849 0.96291 1.21624 0.96236 1.00876 0.96553 1.21521 0.96722 0.98680 0.98589 1.21581 0.97962 1.00671 0.95764 1.21523 0.96157 1.00118 0.97759 1.21647 0.97296 0.98922 0.97723 1.71089 1.01606 1.27208 1.17577 1.42463 1.78137 1.10483 1.05193 1.19221 1.35898 0.93774 0.87304 0.91493 1.24649 1.02436 0.95958 0.97779 1.69634 1.51390 1.08504 1.28726 0.86255 0.77705 0.78656 0.83998 1.21974 1.21834 1.20883 0.93431 0.94280 0.92552 0.90721 0.90021 0.93980 0.90259 0.88174 0.75595 0.86675 0.91186 0.91215 0.91418 0.91533 0.91817 0.91885 0.91339 0.91410 0.90814 0.91185 0.78252 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.49 37.16 0.35 -2.66 16 2 C 0.15 3.26 3.20 -67.93 -0.22 3.04 16 3 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 4 C 0.11 1.98 5.05 -4.04 -0.02 1.96 16 5 N -0.57 -10.97 2.73 -182.86 -0.50 -11.47 16 6 C 0.08 1.52 9.12 59.85 0.55 2.06 16 7 C 0.60 11.62 7.67 -12.53 -0.10 11.53 16 8 O -0.55 -11.53 16.46 5.26 0.09 -11.44 16 9 C -0.06 -0.95 6.66 -83.03 -0.55 -1.50 16 10 C 0.00 0.00 11.95 29.96 0.36 0.36 16 11 O -0.20 -2.60 10.73 6.48 0.07 -2.53 16 12 C 0.20 2.65 6.81 -13.08 -0.09 2.56 16 13 C 0.01 0.12 2.66 -91.77 -0.24 -0.13 16 14 C -0.11 -0.93 5.19 -26.73 -0.14 -1.07 16 15 C -0.12 -0.77 5.92 -26.74 -0.16 -0.93 16 16 C -0.12 -0.79 5.92 -26.74 -0.16 -0.95 16 17 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 18 C -0.12 -1.11 5.19 -26.72 -0.14 -1.25 16 19 N -0.45 -7.27 7.86 -7.66 -0.06 -7.33 16 20 N -0.72 -18.02 4.57 -53.43 -0.24 -18.26 16 21 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 25 Si 0.90 22.72 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.08 1.42 7.38 -51.93 -0.38 1.04 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.60 5.78 -51.93 -0.30 1.30 16 36 H 0.10 2.00 5.32 -51.93 -0.28 1.73 16 37 H 0.23 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.38 9.87 5.41 -40.82 -0.22 9.65 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -32.59 398.83 -8.23 -40.82 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.33 Total: 8.54 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.96 Total: 4.90 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.08 Total: -63.98 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.16 Total: -13.97 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.59 -8.23 -40.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725523284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.870 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds