Wall clock time and date at job start Tue Mar 31 2020 18:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47201 * 2 1 4 4 C 1.52997 * 109.47194 * 120.00356 * 2 1 3 5 5 N 1.46500 * 109.47225 * 174.99927 * 4 2 1 6 6 C 1.46498 * 119.99733 * 269.99680 * 5 4 2 7 7 C 1.34776 * 120.00399 * 89.99620 * 5 4 2 8 8 O 1.21619 * 119.99400 * 3.23096 * 7 5 4 9 9 C 1.47408 * 120.00316 * 183.23656 * 7 5 4 10 10 C 1.36093 * 126.45024 * 173.43478 * 9 7 5 11 11 O 1.34262 * 106.95083 * 180.24029 * 10 9 7 12 12 C 1.34055 * 108.22624 * 359.57180 * 11 10 9 13 13 C 1.50696 * 125.37966 * 180.13728 * 12 11 10 14 14 C 1.52998 * 109.47449 * 60.34861 * 13 12 11 15 15 C 1.52997 * 109.47142 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47278 * 59.99740 * 15 14 13 17 17 C 1.52994 * 109.47585 * 299.99790 * 16 15 14 18 18 C 1.53006 * 109.46874 * 60.00164 * 17 16 15 19 19 N 1.29940 * 109.23858 * 0.43582 * 12 11 10 20 20 N 1.46499 * 109.46556 * 239.99928 * 2 1 3 21 21 C 1.36938 * 119.99945 * 85.00254 * 20 2 1 22 22 H 1.07998 * 120.00426 * 359.97438 * 21 20 2 23 23 C 1.38816 * 119.99850 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00111 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99763 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46970 * 89.99945 * 25 23 21 27 27 H 1.48501 * 109.47044 * 209.99968 * 25 23 21 28 28 H 1.48503 * 109.47421 * 330.00041 * 25 23 21 29 29 H 1.08999 * 109.47201 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46761 * 299.99706 * 1 2 3 31 31 H 1.09002 * 109.47482 * 59.99532 * 1 2 3 32 32 H 1.09001 * 109.47116 * 54.99412 * 4 2 1 33 33 H 1.09001 * 109.46851 * 294.99783 * 4 2 1 34 34 H 1.08999 * 109.47167 * 264.06431 * 6 5 4 35 35 H 1.09002 * 109.47237 * 24.06830 * 6 5 4 36 36 H 1.09000 * 109.47064 * 144.06101 * 6 5 4 37 37 H 1.07998 * 126.52454 * 359.96755 * 10 9 7 38 38 H 1.08997 * 109.47069 * 180.35387 * 13 12 11 39 39 H 1.09004 * 109.46781 * 300.00398 * 14 13 12 40 40 H 1.08998 * 109.47062 * 59.99782 * 14 13 12 41 41 H 1.09009 * 109.46833 * 299.99563 * 15 14 13 42 42 H 1.09000 * 109.47036 * 180.02562 * 15 14 13 43 43 H 1.09009 * 109.46891 * 179.97438 * 16 15 14 44 44 H 1.09001 * 109.47483 * 60.00395 * 16 15 14 45 45 H 1.09001 * 109.47205 * 300.00776 * 17 16 15 46 46 H 1.08998 * 109.47386 * 179.97438 * 17 16 15 47 47 H 1.08995 * 109.47618 * 180.02562 * 18 17 16 48 48 H 1.08997 * 109.47039 * 59.99645 * 18 17 16 49 49 H 0.96996 * 120.00246 * 264.99728 * 20 2 1 50 50 H 0.97006 * 120.00106 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5611 7 6 4.2677 0.1491 1.7155 8 8 3.7496 1.0877 2.2897 9 6 5.7350 0.0785 1.5935 10 6 6.6240 1.0416 1.9597 11 8 7.8491 0.5730 1.6728 12 6 7.7168 -0.6546 1.1508 13 6 8.8511 -1.5358 0.6949 14 6 9.7788 -1.8253 1.8766 15 6 10.9307 -2.7194 1.4135 16 6 11.7167 -2.0081 0.3104 17 6 10.7891 -1.7187 -0.8714 18 6 9.6372 -0.8244 -0.4083 19 7 6.4556 -0.9622 1.0943 20 7 2.0182 -0.6906 -1.1962 21 6 2.1490 -0.0075 -2.3758 22 1 1.8918 1.0403 -2.4244 23 6 2.6121 -0.6618 -3.5091 24 7 2.9250 -1.9388 -3.4500 25 14 2.7898 0.2699 -5.1184 26 1 4.1516 0.8559 -5.2033 27 1 2.5799 -0.6618 -6.2555 28 1 1.7790 1.3564 -5.1756 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6053 -1.7198 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 4.3782 -2.7262 1.3261 35 1 3.4320 -2.4354 -0.1532 36 1 5.0325 -1.6816 0.0420 37 1 6.3887 2.0021 2.3939 38 1 8.4505 -2.4732 0.3092 39 1 10.1793 -0.8878 2.2622 40 1 9.2186 -2.3317 2.6627 41 1 10.5303 -3.6571 1.0276 42 1 11.5913 -2.9261 2.2555 43 1 12.5377 -2.6450 -0.0192 44 1 12.1171 -1.0706 0.6962 45 1 10.3888 -2.6562 -1.2572 46 1 11.3491 -1.2115 -1.6571 47 1 8.9760 -0.6185 -1.2500 48 1 10.0375 0.1130 -0.0224 49 1 2.2489 -1.6318 -1.1527 50 1 3.2482 -2.3962 -4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725523284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:22 Heat of formation + Delta-G solvation = -30.878563 kcal Electronic energy + Delta-G solvation = -30020.681289 eV Core-core repulsion = 26048.721654 eV Total energy + Delta-G solvation = -3971.959635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.52798 -40.85060 -39.39666 -37.95714 -36.27022 -35.52952 -33.91833 -33.25345 -31.70230 -30.77069 -30.14141 -28.25855 -27.36869 -25.79239 -24.65859 -24.31447 -23.53005 -22.42801 -21.62921 -20.99982 -20.15143 -19.29041 -18.64535 -17.86060 -17.69340 -17.17783 -16.75103 -16.56002 -16.31421 -15.69135 -15.54601 -15.22127 -15.16743 -15.10561 -14.83160 -14.59040 -13.99876 -13.79568 -13.68059 -13.56036 -13.51585 -13.43260 -13.14187 -13.09279 -12.83091 -12.78808 -12.53191 -12.38347 -12.22316 -12.19873 -12.04053 -11.95418 -11.66191 -11.52993 -11.41374 -11.26746 -11.12513 -11.07363 -10.94024 -10.10505 -9.56696 -8.95619 -7.92463 -5.18389 0.05035 0.94194 1.43805 1.44039 1.52463 1.53535 1.93521 2.24583 2.55161 2.71950 3.40617 3.47140 3.66308 3.76095 3.83941 3.86294 4.01675 4.08277 4.24154 4.29502 4.30318 4.42267 4.47489 4.48924 4.53035 4.56922 4.57629 4.61479 4.66680 4.71172 4.75396 4.82729 4.87480 5.01055 5.05936 5.10496 5.14374 5.23773 5.24420 5.24570 5.30633 5.37399 5.39462 5.45737 5.51082 5.57010 5.65162 6.25647 6.32112 6.48641 7.02347 7.37119 8.10683 8.38055 9.30247 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.003624 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.999174 B = 7724.415687 C = 9498.542695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.023 0.977 4 C 0.114 3.886 5 N -0.581 5.581 6 C 0.096 3.904 7 C 0.591 3.409 8 O -0.574 6.574 9 C -0.096 4.096 10 C 0.023 3.977 11 O -0.189 6.189 12 C 0.202 3.798 13 C 0.012 3.988 14 C -0.108 4.108 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.115 4.115 19 N -0.473 5.473 20 N -0.726 5.726 21 C -0.236 4.236 22 H 0.061 0.939 23 C -0.064 4.064 24 N -0.959 5.959 25 Si 0.960 3.040 26 H -0.293 1.293 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.257 0.743 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.377 0.623 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.227 -1.346 12.934 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.042 0.958 4 C -0.009 4.009 5 N -0.309 5.309 6 C -0.047 4.047 7 C 0.380 3.620 8 O -0.456 6.456 9 C -0.215 4.215 10 C -0.051 4.051 11 O -0.075 6.075 12 C -0.007 4.007 13 C -0.008 4.008 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.153 4.153 19 N -0.202 5.202 20 N -0.369 5.369 21 C -0.368 4.368 22 H 0.079 0.921 23 C -0.257 4.257 24 N -0.610 5.610 25 Si 0.790 3.210 26 H -0.221 1.221 27 H -0.218 1.218 28 H -0.201 1.201 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.212 0.788 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.688 -1.330 12.864 21.113 hybrid contribution -0.165 0.855 -1.075 1.384 sum 16.523 -0.475 11.789 20.303 Atomic orbital electron populations 1.22197 0.96385 1.01583 1.00918 1.20799 0.93609 0.94703 0.86634 0.95847 1.21906 0.78355 1.02326 0.98345 1.47531 1.06885 1.21169 1.55309 1.22029 0.99175 0.86462 0.97028 1.17093 0.84535 0.81954 0.78451 1.90726 1.74342 1.34356 1.46141 1.21746 0.95518 0.94563 1.09696 1.25705 0.79635 1.00815 0.98942 1.84368 1.31783 1.30225 1.61131 1.27093 0.94476 0.83042 0.96061 1.20046 0.88241 0.95039 0.97435 1.21601 0.96227 1.01411 0.95419 1.21523 0.96242 0.98258 0.99164 1.21573 0.97891 1.01144 0.95058 1.21522 0.95652 0.99605 0.98544 1.21622 0.97483 0.99558 0.96628 1.71010 1.02721 1.27732 1.18745 1.42548 1.78468 1.10261 1.05601 1.19445 1.35109 0.93681 0.88586 0.92120 1.25312 1.02981 0.96839 1.00579 1.69762 1.52434 1.09601 1.29166 0.85337 0.77491 0.77651 0.80477 1.22050 1.21779 1.20083 0.92644 0.91109 0.94385 0.88757 0.88778 0.91835 0.92216 0.89716 0.72754 0.87002 0.90868 0.91418 0.91318 0.90068 0.90554 0.91482 0.91505 0.90811 0.93010 0.90825 0.78828 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.49 71.98 0.68 -4.78 16 2 C 0.15 6.42 3.20 44.99 0.14 6.56 16 3 H 0.02 1.11 8.08 -2.39 -0.02 1.09 16 4 C 0.11 4.08 5.05 86.38 0.44 4.52 16 5 N -0.58 -22.29 2.73 -850.68 -2.32 -24.61 16 6 C 0.10 3.61 9.12 127.77 1.17 4.77 16 7 C 0.59 23.15 7.67 86.66 0.66 23.81 16 8 O -0.57 -23.94 16.46 -4.09 -0.07 -24.00 16 9 C -0.10 -3.32 6.66 40.40 0.27 -3.06 16 10 C 0.02 0.63 11.95 67.32 0.80 1.43 16 11 O -0.19 -4.80 10.73 0.28 0.00 -4.80 16 12 C 0.20 5.41 6.81 88.39 0.60 6.01 16 13 C 0.01 0.23 2.66 -11.54 -0.03 0.20 16 14 C -0.11 -1.58 5.19 30.59 0.16 -1.42 16 15 C -0.11 -1.24 5.92 30.59 0.18 -1.06 16 16 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 17 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 18 C -0.11 -2.09 5.19 30.60 0.16 -1.93 16 19 N -0.47 -15.58 7.86 -293.04 -2.30 -17.88 16 20 N -0.73 -36.87 4.57 -322.94 -1.47 -38.35 16 21 C -0.24 -13.44 9.93 84.03 0.83 -12.61 16 22 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 23 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 24 N -0.96 -57.59 13.06 21.65 0.28 -57.31 16 25 Si 0.96 47.09 29.55 68.60 2.03 49.12 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 3.01 8.07 -2.39 -0.02 2.99 16 33 H 0.09 3.16 7.38 -2.39 -0.02 3.14 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.47 5.78 -2.39 -0.01 2.46 16 36 H 0.08 3.50 5.32 -2.39 -0.01 3.49 16 37 H 0.26 5.12 8.06 -2.91 -0.02 5.10 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.38 19.84 5.41 -92.71 -0.50 19.34 16 50 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -70.36 398.83 3.47 -66.88 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.43 Total: 34.21 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 6.90 Total: 16.73 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -5.82 Total: -138.15 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.06 Total: -28.80 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -70.36 3.47 -66.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725523284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.004 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds