Wall clock time and date at job start Tue Mar 31 2020 19:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47055 * 119.99546 * 2 1 3 5 5 C 1.46495 * 120.00345 * 295.47681 * 4 2 1 6 6 C 1.53000 * 109.47283 * 269.99779 * 5 4 2 7 7 N 1.46495 * 109.47283 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00345 * 90.00221 * 7 6 5 9 9 C 1.36940 * 119.99979 * 270.00328 * 7 6 5 10 10 H 1.08004 * 120.00041 * 21.36667 * 9 7 6 11 11 C 1.38811 * 120.00067 * 201.36743 * 9 7 6 12 12 N 1.31627 * 120.00209 * 11.35166 * 11 9 7 13 13 Si 1.86801 * 120.00037 * 191.34681 * 11 9 7 14 14 H 1.48493 * 109.47101 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47058 * 120.00220 * 13 11 9 16 16 H 1.48501 * 109.47243 * 239.99994 * 13 11 9 17 17 C 1.34775 * 119.99828 * 115.47517 * 4 2 1 18 18 O 1.21286 * 120.00236 * 185.09291 * 17 4 2 19 19 C 1.50704 * 119.99895 * 5.09666 * 17 4 2 20 20 H 1.09000 * 109.47044 * 311.36993 * 19 17 4 21 21 C 1.53000 * 109.47345 * 71.37687 * 19 17 4 22 22 O 1.42904 * 109.46956 * 191.37447 * 19 17 4 23 23 C 1.35918 * 116.99708 * 155.49222 * 22 19 17 24 24 C 1.39133 * 120.47356 * 1.51447 * 23 22 19 25 25 C 1.38534 * 118.37425 * 180.02562 * 24 23 22 26 26 C 1.38261 * 119.22076 * 0.02562 * 25 24 23 27 27 N 1.31845 * 120.88650 * 359.97438 * 26 25 24 28 28 C 1.31846 * 121.77840 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47269 * 299.99701 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00625 * 1 2 3 31 31 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47046 * 239.99546 * 2 1 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46755 * 299.99964 * 3 2 1 35 35 H 1.09000 * 109.47217 * 59.99624 * 3 2 1 36 36 H 1.09000 * 109.47164 * 30.00176 * 5 4 2 37 37 H 1.09009 * 109.47339 * 149.99898 * 5 4 2 38 38 H 1.09000 * 109.47345 * 300.00287 * 6 5 4 39 39 H 1.09005 * 109.46382 * 59.99942 * 6 5 4 40 40 H 1.09000 * 109.47039 * 93.85972 * 8 7 6 41 41 H 1.08999 * 109.47282 * 213.86414 * 8 7 6 42 42 H 1.09005 * 109.46984 * 333.86224 * 8 7 6 43 43 H 0.96995 * 120.00327 * 179.97438 * 12 11 9 44 44 H 1.08998 * 109.46915 * 54.56802 * 21 19 17 45 45 H 1.08998 * 109.47057 * 174.57343 * 21 19 17 46 46 H 1.08998 * 109.46343 * 294.57211 * 21 19 17 47 47 H 1.07994 * 120.81618 * 359.97438 * 24 23 22 48 48 H 1.07998 * 120.39109 * 179.97438 * 25 24 23 49 49 H 1.07998 * 119.55660 * 179.97438 * 26 25 24 50 50 H 1.08007 * 119.65510 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7480 -0.1348 2.5245 6 6 2.8817 0.8130 2.9212 7 7 2.6111 1.3691 4.2492 8 6 3.0990 0.6789 5.4458 9 6 1.9020 2.5341 4.3721 10 1 1.2577 2.8614 3.5694 11 6 2.0113 3.2945 5.5283 12 7 2.9530 3.0241 6.4073 13 14 0.8220 4.7016 5.8367 14 1 -0.1355 4.7974 4.7057 15 1 0.0760 4.4521 7.0964 16 1 1.5795 5.9735 5.9537 17 6 2.7163 -1.8370 1.0747 18 8 3.0409 -2.4573 2.0651 19 6 3.0935 -2.3484 -0.2918 20 1 2.2167 -2.3355 -0.9393 21 6 4.1815 -1.4536 -0.8888 22 8 3.5843 -3.6859 -0.1812 23 6 3.4888 -4.4716 -1.2861 24 6 2.9627 -3.9636 -2.4698 25 6 2.8851 -4.8028 -3.5693 26 6 3.3287 -6.1073 -3.4553 27 7 3.8220 -6.5576 -2.3186 28 6 3.9133 -5.7915 -1.2494 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 0.8062 0.4136 2.5041 37 1 1.6810 -0.9451 3.2506 38 1 3.8235 0.2646 2.9415 39 1 2.9486 1.6232 2.1951 40 1 4.0647 1.0930 5.7356 41 1 2.3864 0.8145 6.2594 42 1 3.2088 -0.3844 5.2325 43 1 3.0296 3.5557 7.2150 44 1 5.0201 -1.3895 -0.1954 45 1 4.5226 -1.8772 -1.8334 46 1 3.7769 -0.4565 -1.0627 47 1 2.6225 -2.9404 -2.5298 48 1 2.4820 -4.4425 -4.5042 49 1 3.2702 -6.7664 -4.3089 50 1 4.3228 -6.1961 -0.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725729626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:14 Heat of formation + Delta-G solvation = -0.097255 kcal Electronic energy + Delta-G solvation = -29957.922408 eV Core-core repulsion = 25987.297551 eV Total energy + Delta-G solvation = -3970.624857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21466 -40.10822 -38.36248 -36.76004 -35.48140 -32.76470 -32.49010 -32.04488 -31.03366 -30.33248 -28.32926 -27.23884 -25.84440 -25.19372 -24.16908 -23.63787 -22.73213 -21.73991 -20.55611 -19.05054 -18.78160 -17.52878 -17.04779 -16.69367 -16.49069 -16.03544 -15.68854 -15.33410 -14.77736 -14.62538 -14.29500 -14.17446 -13.99525 -13.79780 -13.62805 -13.35114 -13.14031 -13.05423 -12.86711 -12.52747 -12.45070 -12.30169 -12.14098 -11.95663 -11.83944 -11.61076 -11.47134 -11.16048 -10.97335 -10.87367 -10.81408 -10.49798 -10.16407 -10.13654 -9.92121 -9.91379 -9.74204 -9.60249 -8.75059 -8.72881 -8.44742 -6.74848 -5.72204 -3.18796 0.79670 0.90394 2.34824 2.57892 3.28401 3.35700 3.42019 3.44201 3.47206 4.10977 4.21015 4.23520 4.39840 4.47274 4.48899 4.56934 4.61789 4.75347 4.87658 4.93590 5.00298 5.18794 5.22362 5.40698 5.42092 5.48484 5.52560 5.64785 5.65899 5.69361 5.71558 5.72872 5.78306 5.79959 6.01034 6.05796 6.15938 6.22466 6.31375 6.50184 6.66200 6.86081 6.90664 6.96045 7.46171 7.48256 7.64348 7.73393 7.83229 8.21284 8.39106 9.23252 9.86873 10.36151 11.32591 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002517 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.699270 B =11121.096838 C =11814.350420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 C -0.170 4.170 4 N -0.596 5.596 5 C 0.093 3.907 6 C 0.138 3.862 7 N -0.600 5.600 8 C 0.163 3.837 9 C -0.254 4.254 10 H 0.068 0.932 11 C 0.000 4.000 12 N -0.907 5.907 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.516 3.484 18 O -0.512 6.512 19 C 0.065 3.935 20 H 0.093 0.907 21 C -0.179 4.179 22 O -0.276 6.276 23 C 0.086 3.914 24 C -0.172 4.172 25 C -0.130 4.130 26 C 0.052 3.948 27 N -0.446 5.446 28 C 0.076 3.924 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.027 0.973 41 H 0.046 0.954 42 H -0.001 1.001 43 H 0.252 0.748 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.157 0.843 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -10.988 -22.941 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 C -0.227 4.227 4 N -0.331 5.331 5 C -0.031 4.031 6 C 0.009 3.991 7 N -0.323 5.323 8 C 0.018 3.982 9 C -0.384 4.384 10 H 0.086 0.914 11 C -0.198 4.198 12 N -0.552 5.552 13 Si 0.735 3.265 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.218 1.218 17 C 0.300 3.700 18 O -0.386 6.386 19 C 0.005 3.995 20 H 0.111 0.889 21 C -0.236 4.236 22 O -0.186 6.186 23 C 0.038 3.962 24 C -0.198 4.198 25 C -0.149 4.149 26 C -0.105 4.105 27 N -0.155 5.155 28 C -0.083 4.083 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.158 0.842 48 H 0.156 0.844 49 H 0.175 0.825 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.434 -12.126 -21.944 25.113 hybrid contribution -1.097 1.951 -0.031 2.239 sum -2.531 -10.174 -21.976 24.349 Atomic orbital electron populations 1.22202 0.94706 1.02338 1.03183 1.21296 0.94840 0.94401 0.87428 1.22344 1.01881 0.95024 1.03477 1.48096 1.53719 1.22981 1.08266 1.22566 1.01391 0.98316 0.80821 1.21177 0.94306 0.94887 0.88679 1.43870 1.64081 1.24780 0.99580 1.20820 0.98989 0.89873 0.88498 1.19197 1.18545 0.98177 1.02476 0.91413 1.25024 0.97915 0.98256 0.98579 1.70102 1.32240 1.41224 1.11611 0.86191 0.80447 0.82063 0.77839 1.20398 1.21639 1.21755 1.19859 0.79084 0.81344 0.89669 1.90763 1.52752 1.56299 1.38815 1.22349 0.98341 0.81809 0.97033 0.88917 1.22399 0.99330 0.99824 1.02043 1.86280 1.77227 1.22564 1.32567 1.20297 0.96477 0.92616 0.86807 1.21766 1.03305 1.01675 0.93092 1.21996 0.99282 0.94657 0.98998 1.22679 0.97645 0.94239 0.95898 1.67756 1.12294 1.36318 0.99165 1.22285 1.00149 0.87775 0.98083 0.91211 0.91367 0.92526 0.89912 0.91861 0.91630 0.90248 0.90438 0.90432 0.94614 0.92803 0.95469 0.93500 0.98257 0.93780 0.90182 0.90876 0.89582 0.84205 0.84448 0.82532 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.25 37.16 0.34 -1.19 16 2 C 0.12 1.24 2.41 -67.93 -0.16 1.07 16 3 C -0.17 -1.74 7.76 37.16 0.29 -1.45 16 4 N -0.60 -8.30 2.40 -166.11 -0.40 -8.70 16 5 C 0.09 1.64 5.06 -4.04 -0.02 1.62 16 6 C 0.14 2.83 5.68 -4.04 -0.02 2.81 16 7 N -0.60 -15.14 2.93 -181.12 -0.53 -15.67 16 8 C 0.16 4.20 8.96 59.85 0.54 4.74 16 9 C -0.25 -6.82 9.68 -15.06 -0.15 -6.96 16 10 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 11 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 12 N -0.91 -26.56 10.53 55.49 0.58 -25.97 16 13 Si 0.90 21.52 29.57 -169.99 -5.03 16.50 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.52 7.85 7.00 -10.98 -0.08 7.77 16 18 O -0.51 -10.26 16.09 -14.10 -0.23 -10.49 16 19 C 0.06 0.72 1.79 -27.88 -0.05 0.67 16 20 H 0.09 0.79 5.03 -51.93 -0.26 0.52 16 21 C -0.18 -1.60 8.87 37.16 0.33 -1.27 16 22 O -0.28 -3.60 9.37 -39.13 -0.37 -3.96 16 23 C 0.09 0.94 6.57 -39.08 -0.26 0.68 16 24 C -0.17 -1.42 8.37 -39.14 -0.33 -1.75 16 25 C -0.13 -0.90 10.11 -39.46 -0.40 -1.30 16 26 C 0.05 0.43 11.18 -17.54 -0.20 0.23 16 27 N -0.45 -4.83 10.36 -13.12 -0.14 -4.97 16 28 C 0.08 0.84 11.14 -17.37 -0.19 0.65 16 29 H 0.07 0.76 6.84 -51.93 -0.36 0.41 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.61 4.51 -51.93 -0.23 0.38 16 33 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.04 6.35 -51.93 -0.33 0.71 16 36 H 0.08 1.34 6.67 -51.93 -0.35 1.00 16 37 H 0.08 1.57 7.36 -51.92 -0.38 1.19 16 38 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.05 1.05 5.31 -51.93 -0.28 0.77 16 40 H 0.03 0.75 7.46 -51.93 -0.39 0.36 16 41 H 0.05 1.28 7.09 -51.93 -0.37 0.91 16 42 H 0.00 -0.03 8.04 -51.93 -0.42 -0.44 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.54 7.22 -51.93 -0.37 0.16 16 46 H 0.09 0.64 5.74 -51.93 -0.30 0.34 16 47 H 0.14 0.85 5.78 -52.49 -0.30 0.55 16 48 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 49 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -33.90 393.52 -8.27 -42.17 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.65 Total: -1.08 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.44 Total: 6.25 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.48 Total: -55.32 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.59 Total: -14.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.90 -8.27 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725729626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.074 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds