Wall clock time and date at job start Tue Mar 31 2020 19:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46861 * 2 1 4 4 N 1.46498 * 109.47055 * 119.99546 * 2 1 3 5 5 C 1.46495 * 120.00345 * 295.47681 * 4 2 1 6 6 C 1.53000 * 109.47283 * 269.99779 * 5 4 2 7 7 N 1.46495 * 109.47283 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00345 * 90.00221 * 7 6 5 9 9 C 1.36940 * 119.99979 * 270.00328 * 7 6 5 10 10 H 1.08004 * 120.00041 * 21.36667 * 9 7 6 11 11 C 1.38811 * 120.00067 * 201.36743 * 9 7 6 12 12 N 1.31627 * 120.00209 * 11.35166 * 11 9 7 13 13 Si 1.86801 * 120.00037 * 191.34681 * 11 9 7 14 14 H 1.48493 * 109.47101 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47058 * 120.00220 * 13 11 9 16 16 H 1.48501 * 109.47243 * 239.99994 * 13 11 9 17 17 C 1.34775 * 119.99828 * 115.47517 * 4 2 1 18 18 O 1.21286 * 120.00236 * 185.09291 * 17 4 2 19 19 C 1.50704 * 119.99895 * 5.09666 * 17 4 2 20 20 H 1.09000 * 109.47044 * 311.36993 * 19 17 4 21 21 C 1.53000 * 109.47345 * 71.37687 * 19 17 4 22 22 O 1.42904 * 109.46956 * 191.37447 * 19 17 4 23 23 C 1.35918 * 116.99708 * 155.49222 * 22 19 17 24 24 C 1.39133 * 120.47356 * 1.51447 * 23 22 19 25 25 C 1.38534 * 118.37425 * 180.02562 * 24 23 22 26 26 C 1.38261 * 119.22076 * 0.02562 * 25 24 23 27 27 N 1.31845 * 120.88650 * 359.97438 * 26 25 24 28 28 C 1.31846 * 121.77840 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47269 * 299.99701 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00625 * 1 2 3 31 31 H 1.09004 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47046 * 239.99546 * 2 1 3 33 33 H 1.09002 * 109.47075 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46755 * 299.99964 * 3 2 1 35 35 H 1.09000 * 109.47217 * 59.99624 * 3 2 1 36 36 H 1.09000 * 109.47164 * 30.00176 * 5 4 2 37 37 H 1.09009 * 109.47339 * 149.99898 * 5 4 2 38 38 H 1.09000 * 109.47345 * 300.00287 * 6 5 4 39 39 H 1.09005 * 109.46382 * 59.99942 * 6 5 4 40 40 H 1.09000 * 109.47039 * 93.85972 * 8 7 6 41 41 H 1.08999 * 109.47282 * 213.86414 * 8 7 6 42 42 H 1.09005 * 109.46984 * 333.86224 * 8 7 6 43 43 H 0.96995 * 120.00327 * 179.97438 * 12 11 9 44 44 H 1.08998 * 109.46915 * 54.56802 * 21 19 17 45 45 H 1.08998 * 109.47057 * 174.57343 * 21 19 17 46 46 H 1.08998 * 109.46343 * 294.57211 * 21 19 17 47 47 H 1.07994 * 120.81618 * 359.97438 * 24 23 22 48 48 H 1.07998 * 120.39109 * 179.97438 * 25 24 23 49 49 H 1.07998 * 119.55660 * 179.97438 * 26 25 24 50 50 H 1.08007 * 119.65510 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7480 -0.1348 2.5245 6 6 2.8817 0.8130 2.9212 7 7 2.6111 1.3691 4.2492 8 6 3.0990 0.6789 5.4458 9 6 1.9020 2.5341 4.3721 10 1 1.2577 2.8614 3.5694 11 6 2.0113 3.2945 5.5283 12 7 2.9530 3.0241 6.4073 13 14 0.8220 4.7016 5.8367 14 1 -0.1355 4.7974 4.7057 15 1 0.0760 4.4521 7.0964 16 1 1.5795 5.9735 5.9537 17 6 2.7163 -1.8370 1.0747 18 8 3.0409 -2.4573 2.0651 19 6 3.0935 -2.3484 -0.2918 20 1 2.2167 -2.3355 -0.9393 21 6 4.1815 -1.4536 -0.8888 22 8 3.5843 -3.6859 -0.1812 23 6 3.4888 -4.4716 -1.2861 24 6 2.9627 -3.9636 -2.4698 25 6 2.8851 -4.8028 -3.5693 26 6 3.3287 -6.1073 -3.4553 27 7 3.8220 -6.5576 -2.3186 28 6 3.9133 -5.7915 -1.2494 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 0.8062 0.4136 2.5041 37 1 1.6810 -0.9451 3.2506 38 1 3.8235 0.2646 2.9415 39 1 2.9486 1.6232 2.1951 40 1 4.0647 1.0930 5.7356 41 1 2.3864 0.8145 6.2594 42 1 3.2088 -0.3844 5.2325 43 1 3.0296 3.5557 7.2150 44 1 5.0201 -1.3895 -0.1954 45 1 4.5226 -1.8772 -1.8334 46 1 3.7769 -0.4565 -1.0627 47 1 2.6225 -2.9404 -2.5298 48 1 2.4820 -4.4425 -4.5042 49 1 3.2702 -6.7664 -4.3089 50 1 4.3228 -6.1961 -0.3355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725729626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:13 Heat of formation + Delta-G solvation = -20.893022 kcal Electronic energy + Delta-G solvation = -29958.824180 eV Core-core repulsion = 25987.297551 eV Total energy + Delta-G solvation = -3971.526629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07604 -41.08104 -39.23908 -38.06908 -37.24301 -33.98422 -33.30812 -33.09991 -32.52135 -31.08201 -29.85997 -28.04557 -27.94574 -26.23499 -25.25666 -24.57976 -23.73824 -22.68193 -22.34169 -20.08304 -19.60563 -18.84720 -18.30356 -17.76994 -17.45111 -17.15697 -16.85291 -16.59184 -16.17207 -15.58040 -15.40596 -15.21830 -15.12120 -14.89419 -14.75413 -14.59203 -14.36116 -14.06322 -13.96790 -13.87905 -13.53547 -13.21586 -13.12323 -13.04675 -12.84396 -12.81847 -12.70900 -12.63710 -12.50032 -12.31280 -12.14079 -12.09427 -11.93017 -11.78501 -11.44849 -10.89139 -10.72345 -10.66666 -10.56738 -9.88586 -9.46749 -8.79809 -7.82601 -5.32529 0.15616 0.24947 1.39378 1.41309 1.47813 1.48749 1.59043 2.31334 2.52551 2.80786 3.19201 3.32346 3.46812 3.57646 3.70206 3.75491 3.76564 3.87194 3.91364 4.11586 4.13745 4.15586 4.25484 4.32300 4.51332 4.52454 4.60144 4.62993 4.69992 4.78062 4.80957 4.82346 4.88686 4.97007 5.01371 5.02589 5.06650 5.10035 5.13786 5.26858 5.39638 5.44125 5.48097 5.54656 5.59336 5.66071 6.13872 6.29920 6.37304 6.97890 7.04249 7.12017 7.82119 8.29658 9.22264 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002517 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.699270 B =11121.096838 C =11814.350420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 C -0.169 4.169 4 N -0.590 5.590 5 C 0.113 3.887 6 C 0.144 3.856 7 N -0.617 5.617 8 C 0.181 3.819 9 C -0.256 4.256 10 H 0.083 0.917 11 C -0.061 4.061 12 N -0.945 5.945 13 Si 0.974 3.026 14 H -0.258 1.258 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.507 3.493 18 O -0.574 6.574 19 C 0.072 3.928 20 H 0.130 0.870 21 C -0.174 4.174 22 O -0.308 6.308 23 C 0.066 3.934 24 C -0.166 4.166 25 C -0.117 4.117 26 C 0.046 3.954 27 N -0.474 5.474 28 C 0.049 3.951 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.019 0.981 39 H 0.069 0.931 40 H 0.002 0.998 41 H 0.024 0.976 42 H 0.011 0.989 43 H 0.247 0.753 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.169 0.831 48 H 0.179 0.821 49 H 0.185 0.815 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 -9.953 -27.819 29.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.017 3.983 3 C -0.226 4.226 4 N -0.324 5.324 5 C -0.012 4.012 6 C 0.017 3.983 7 N -0.341 5.341 8 C 0.035 3.965 9 C -0.385 4.385 10 H 0.100 0.900 11 C -0.255 4.255 12 N -0.592 5.592 13 Si 0.802 3.198 14 H -0.182 1.182 15 H -0.223 1.223 16 H -0.220 1.220 17 C 0.295 3.705 18 O -0.452 6.452 19 C 0.013 3.987 20 H 0.147 0.853 21 C -0.231 4.231 22 O -0.220 6.220 23 C 0.019 3.981 24 C -0.193 4.193 25 C -0.136 4.136 26 C -0.111 4.111 27 N -0.183 5.183 28 C -0.108 4.108 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.139 0.861 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.020 0.980 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.187 0.813 48 H 0.196 0.804 49 H 0.202 0.798 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.371 -11.091 -26.899 29.290 hybrid contribution -0.490 1.542 1.339 2.100 sum -3.861 -9.549 -25.559 27.557 Atomic orbital electron populations 1.22204 0.93709 1.02616 1.03653 1.21708 0.95639 0.94342 0.86646 1.22332 1.01681 0.94973 1.03630 1.48127 1.53252 1.22876 1.08124 1.21916 1.00142 0.96512 0.82604 1.21264 0.94586 0.95486 0.86950 1.44105 1.64213 1.24885 1.00879 1.20490 0.96987 0.90420 0.88556 1.19610 1.18194 0.98069 1.02650 0.89962 1.25897 0.99717 1.01196 0.98672 1.70285 1.34238 1.42653 1.12049 0.85099 0.78410 0.78491 0.77810 1.18198 1.22287 1.22044 1.20756 0.77885 0.80923 0.90974 1.90733 1.55032 1.58186 1.41271 1.22390 1.00395 0.81620 0.94320 0.85328 1.22423 0.97855 1.00597 1.02206 1.86239 1.77993 1.23484 1.34304 1.20386 0.98048 0.92322 0.87393 1.22118 1.01992 1.03102 0.92045 1.22436 0.97503 0.93625 1.00046 1.23301 0.96466 0.95651 0.95670 1.67744 1.13542 1.37014 1.00001 1.22228 1.01639 0.88614 0.98312 0.93453 0.88172 0.92376 0.86090 0.92212 0.88197 0.93328 0.89826 0.93636 0.96246 0.91255 0.98012 0.95707 0.97018 0.94371 0.92691 0.88454 0.87390 0.81348 0.80351 0.79830 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.25 71.98 0.67 -1.76 16 2 C 0.12 1.94 2.41 44.99 0.11 2.05 16 3 C -0.17 -2.89 7.76 71.98 0.56 -2.33 16 4 N -0.59 -15.89 2.40 -797.83 -1.91 -17.81 16 5 C 0.11 4.07 5.06 86.38 0.44 4.51 16 6 C 0.14 6.03 5.68 86.38 0.49 6.52 16 7 N -0.62 -31.97 2.93 -726.94 -2.13 -34.10 16 8 C 0.18 9.81 8.96 127.77 1.15 10.95 16 9 C -0.26 -13.75 9.68 84.03 0.81 -12.94 16 10 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 11 C -0.06 -3.39 5.13 84.86 0.44 -2.96 16 12 N -0.94 -57.12 10.53 21.65 0.23 -56.89 16 13 Si 0.97 44.48 29.57 68.60 2.03 46.51 16 14 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 15 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 C 0.51 15.38 7.00 87.66 0.61 16.00 16 18 O -0.57 -24.24 16.09 15.74 0.25 -23.98 16 19 C 0.07 1.46 1.79 29.85 0.05 1.51 16 20 H 0.13 1.60 5.03 -2.39 -0.01 1.59 16 21 C -0.17 -2.62 8.87 71.98 0.64 -1.98 16 22 O -0.31 -8.00 9.37 -73.83 -0.69 -8.69 16 23 C 0.07 1.37 6.57 22.60 0.15 1.52 16 24 C -0.17 -2.09 8.37 22.56 0.19 -1.91 16 25 C -0.12 -1.10 10.11 22.35 0.23 -0.87 16 26 C 0.05 0.63 11.18 84.70 0.95 1.58 16 27 N -0.47 -9.97 10.36 -195.43 -2.02 -11.99 16 28 C 0.05 1.12 11.14 84.80 0.94 2.07 16 29 H 0.05 0.93 6.84 -2.39 -0.02 0.91 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.12 1.10 4.51 -2.39 -0.01 1.09 16 33 H 0.06 1.07 7.57 -2.39 -0.02 1.05 16 34 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.16 6.35 -2.39 -0.02 1.14 16 36 H 0.08 2.90 6.67 -2.39 -0.02 2.88 16 37 H 0.05 1.93 7.36 -2.38 -0.02 1.91 16 38 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 39 H 0.07 2.68 5.31 -2.38 -0.01 2.67 16 40 H 0.00 0.09 7.46 -2.39 -0.02 0.07 16 41 H 0.02 1.41 7.09 -2.39 -0.02 1.39 16 42 H 0.01 0.57 8.04 -2.38 -0.02 0.56 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.10 1.03 7.22 -2.39 -0.02 1.01 16 46 H 0.11 1.12 5.74 -2.39 -0.01 1.10 16 47 H 0.17 1.03 5.78 -2.91 -0.02 1.02 16 48 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 49 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 50 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -80.01 393.52 5.11 -74.90 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.94 Total: 10.09 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 8.41 Total: 21.96 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -5.84 Total: -120.79 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.44 Total: -32.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -80.01 5.11 -74.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725729626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.008 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds