Wall clock time and date at job start Tue Mar 31 2020 18:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 N 1.46502 * 109.47129 * 240.00404 * 2 1 3 5 5 C 1.34772 * 120.00069 * 85.00272 * 4 2 1 6 6 O 1.21284 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00176 * 180.02562 * 5 4 2 8 8 C 1.54269 * 110.03064 * 297.16153 * 7 5 4 9 9 C 1.54889 * 104.19788 * 217.10283 * 8 7 5 10 10 C 1.54889 * 102.74558 * 37.94239 * 9 8 7 11 11 C 1.53867 * 110.03630 * 179.97438 * 7 5 4 12 12 C 1.50703 * 109.47310 * 120.00104 * 2 1 3 13 13 O 1.21278 * 119.99994 * 93.15193 * 12 2 1 14 14 N 1.34776 * 119.99835 * 273.15406 * 12 2 1 15 15 C 1.47869 * 126.94364 * 5.11999 * 14 12 2 16 16 C 1.56019 * 105.10167 * 181.97975 * 15 14 12 17 17 H 1.08998 * 116.25015 * 158.83328 * 16 15 14 18 18 C 1.57082 * 99.60820 * 32.80742 * 16 15 14 19 19 C 1.49288 * 126.94080 * 184.80888 * 14 12 2 20 20 H 1.08998 * 116.15458 * 15.86099 * 19 14 12 21 21 C 1.58430 * 103.69890 * 246.54250 * 19 14 12 22 22 N 1.47864 * 104.83610 * 288.54852 * 21 19 14 23 23 C 1.36937 * 126.94753 * 182.31021 * 22 21 19 24 24 H 1.08003 * 120.00230 * 180.02562 * 23 22 21 25 25 C 1.38807 * 120.00142 * 359.97438 * 23 22 21 26 26 N 1.31628 * 119.99688 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00436 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47127 * 60.00134 * 27 25 23 29 29 H 1.48502 * 109.47609 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47229 * 300.00561 * 27 25 23 31 31 H 1.08995 * 109.47417 * 295.00210 * 1 2 3 32 32 H 1.09007 * 109.46697 * 175.00318 * 1 2 3 33 33 H 1.09000 * 109.47148 * 55.00520 * 1 2 3 34 34 H 0.96996 * 119.99522 * 264.99372 * 4 2 1 35 35 H 1.09002 * 110.01954 * 58.59843 * 7 5 4 36 36 H 1.08999 * 110.48774 * 335.78683 * 8 7 5 37 37 H 1.09003 * 110.48366 * 98.42285 * 8 7 5 38 38 H 1.08994 * 110.75262 * 279.63076 * 9 8 7 39 39 H 1.09001 * 110.75563 * 156.25593 * 9 8 7 40 40 H 1.09003 * 110.48567 * 203.37745 * 10 9 8 41 41 H 1.09004 * 110.60154 * 80.79211 * 10 9 8 42 42 H 1.08995 * 110.03406 * 238.56856 * 11 7 5 43 43 H 1.09003 * 110.03324 * 359.95069 * 11 7 5 44 44 H 1.08997 * 110.31850 * 300.88801 * 15 14 12 45 45 H 1.09002 * 110.31617 * 63.07992 * 15 14 12 46 46 H 1.09007 * 112.36518 * 64.27368 * 18 16 15 47 47 H 1.09005 * 112.37399 * 191.71263 * 18 16 15 48 48 H 1.09001 * 110.19247 * 169.85463 * 21 19 14 49 49 H 1.08998 * 110.78527 * 47.54343 * 21 19 14 50 50 H 0.97004 * 119.99850 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8583 1.1586 -2.4116 7 6 2.6489 -0.7286 -3.5878 8 6 4.0904 -1.2281 -3.3588 9 6 4.7843 -1.0273 -4.7289 10 6 4.1800 0.3098 -5.2252 11 6 2.7054 0.2490 -4.7746 12 6 2.0324 -0.7104 1.2305 13 8 2.2890 -1.8949 1.1845 14 7 2.1965 -0.0295 2.3819 15 6 1.8350 1.3810 2.6396 16 6 2.2890 1.6555 4.1068 17 1 2.4437 2.7003 4.3761 18 6 3.5502 0.7211 4.1701 19 6 2.7740 -0.5488 3.6569 20 1 3.3340 -1.4812 3.5860 21 6 1.5469 -0.5319 4.6589 22 7 1.3063 0.8999 4.9388 23 6 0.3712 1.4265 5.7894 24 1 0.2921 2.4970 5.9091 25 6 -0.4757 0.5846 6.4969 26 7 -0.3796 -0.7199 6.3507 27 14 -1.7517 1.3030 7.6567 28 1 -2.6745 2.1819 6.8943 29 1 -2.5237 0.2019 8.2867 30 1 -1.0711 2.0963 8.7115 31 1 -0.3634 0.4343 0.9313 32 1 -0.3633 -1.0238 -0.0895 33 1 -0.3633 0.5894 -0.8419 34 1 2.2491 -1.6316 -1.1526 35 1 1.9957 -1.5679 -3.8265 36 1 4.5831 -0.6321 -2.5906 37 1 4.0893 -2.2825 -3.0825 38 1 4.5353 -1.8403 -5.4107 39 1 5.8639 -0.9413 -4.6062 40 1 4.2444 0.3777 -6.3112 41 1 4.6866 1.1556 -4.7604 42 1 2.0805 -0.1164 -5.5895 43 1 2.3690 1.2372 -4.4608 44 1 2.3639 2.0392 1.9503 45 1 0.7579 1.5191 2.5447 46 1 4.3352 1.0369 3.4830 47 1 3.9229 0.5956 5.1867 48 1 1.8041 -1.0591 5.5776 49 1 0.6663 -0.9809 4.1996 50 1 -0.9713 -1.3083 6.8454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732144818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:23 Heat of formation + Delta-G solvation = -28.011269 kcal Electronic energy + Delta-G solvation = -30106.217350 eV Core-core repulsion = 26134.382051 eV Total energy + Delta-G solvation = -3971.835299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62742 -39.89810 -38.19987 -37.18110 -34.89087 -33.72951 -31.91815 -30.88136 -29.19644 -28.92505 -28.69139 -28.52961 -25.34512 -24.74080 -23.33644 -21.99813 -20.99495 -20.37018 -19.98577 -19.75827 -18.57990 -17.89638 -16.95338 -16.49710 -16.23072 -15.80837 -15.58871 -15.25221 -14.79692 -14.65872 -14.20158 -13.95014 -13.87386 -13.60476 -13.37407 -13.25076 -12.47566 -12.38759 -12.16333 -12.02123 -11.94210 -11.78515 -11.57524 -11.49025 -11.38736 -11.37573 -11.33597 -11.06309 -11.04714 -10.88670 -10.81487 -10.76585 -10.64148 -10.31263 -10.14364 -9.86152 -9.68962 -9.62187 -9.14880 -8.74761 -8.09512 -6.97993 -5.80980 -3.15790 2.51158 2.73795 2.94037 3.35302 3.39793 3.41534 3.48449 4.20047 4.31329 4.38391 4.48027 4.59272 4.90626 5.05064 5.08000 5.12407 5.13530 5.16361 5.17294 5.23748 5.31369 5.34602 5.38824 5.50952 5.56035 5.56881 5.63838 5.64907 5.68313 5.78193 5.83313 5.88067 5.89265 6.03085 6.06455 6.10346 6.19936 6.21552 6.33474 6.34213 6.43311 6.53203 6.61999 7.37092 7.41898 7.43975 7.67208 7.94247 8.05471 8.13091 8.38217 9.06010 9.66717 10.35476 11.31009 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.002553 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.131282 B =10964.707357 C =11246.229251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.130 3.870 3 H 0.105 0.895 4 N -0.712 5.712 5 C 0.521 3.479 6 O -0.541 6.541 7 C -0.112 4.112 8 C -0.116 4.116 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.119 4.119 12 C 0.526 3.474 13 O -0.554 6.554 14 N -0.599 5.599 15 C 0.079 3.921 16 C 0.142 3.858 17 H 0.107 0.893 18 C -0.151 4.151 19 C 0.095 3.905 20 H 0.114 0.886 21 C 0.177 3.823 22 N -0.597 5.597 23 C -0.233 4.233 24 H 0.081 0.919 25 C -0.005 4.005 26 N -0.920 5.920 27 Si 0.914 3.086 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 0.327 -19.080 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.123 0.877 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.418 6.418 7 C -0.134 4.134 8 C -0.154 4.154 9 C -0.161 4.161 10 C -0.162 4.162 11 C -0.157 4.157 12 C 0.313 3.687 13 O -0.433 6.433 14 N -0.332 5.332 15 C -0.046 4.046 16 C 0.033 3.967 17 H 0.124 0.876 18 C -0.191 4.191 19 C -0.007 4.007 20 H 0.132 0.868 21 C 0.052 3.948 22 N -0.321 5.321 23 C -0.360 4.360 24 H 0.099 0.901 25 C -0.202 4.202 26 N -0.566 5.566 27 Si 0.744 3.256 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.810 0.413 -19.006 20.953 hybrid contribution -0.801 -0.213 0.715 1.095 sum 8.009 0.200 -18.291 19.969 Atomic orbital electron populations 1.22047 0.92579 1.03188 1.03593 1.20737 0.96019 0.97624 0.83432 0.87677 1.45847 1.67155 1.14806 1.08686 1.20610 0.76893 0.87267 0.84458 1.90665 1.50234 1.16100 1.84778 1.21947 0.98496 0.99446 0.93463 1.22373 0.93130 1.01513 0.98402 1.22499 0.99777 0.97716 0.96107 1.22374 0.95574 0.97694 1.00550 1.22175 0.97031 1.00836 0.95630 1.20029 0.78143 0.86869 0.83656 1.90649 1.53044 1.14943 1.84678 1.49162 1.59788 1.13424 1.10810 1.23434 1.00677 0.80741 0.99788 1.23145 0.89126 0.96186 0.88207 0.87555 1.24192 0.96961 0.96734 1.01165 1.24932 0.96763 0.96895 0.82146 0.86783 1.22368 0.92168 0.85751 0.94515 1.45209 1.37366 1.01032 1.48486 1.19002 1.08863 0.91680 1.16492 0.90139 1.24825 0.99690 0.95477 1.00243 1.69896 1.40589 1.01399 1.44746 0.86181 0.81156 0.77649 0.80626 1.21123 1.21625 1.21084 0.90530 0.91709 0.91112 0.75412 0.88302 0.91065 0.90675 0.91227 0.91310 0.91565 0.91507 0.91469 0.89126 0.92566 0.90684 0.91525 0.89662 0.92632 0.93303 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.47 37.16 0.35 -1.85 16 2 C 0.13 1.90 2.51 -69.08 -0.17 1.73 16 3 H 0.11 1.57 6.77 -51.93 -0.35 1.22 16 4 N -0.71 -9.12 5.00 -54.93 -0.27 -9.39 16 5 C 0.52 6.55 6.96 -10.99 -0.08 6.48 16 6 O -0.54 -8.49 14.87 5.55 0.08 -8.41 16 7 C -0.11 -1.03 3.30 -90.65 -0.30 -1.33 16 8 C -0.12 -0.94 6.31 -25.07 -0.16 -1.10 16 9 C -0.12 -0.85 6.91 -24.74 -0.17 -1.02 16 10 C -0.12 -0.95 6.83 -25.05 -0.17 -1.12 16 11 C -0.12 -1.07 6.40 -25.59 -0.16 -1.23 16 12 C 0.53 9.13 7.09 -10.98 -0.08 9.06 16 13 O -0.55 -10.85 16.40 5.56 0.09 -10.76 16 14 N -0.60 -10.61 2.95 -155.07 -0.46 -11.07 16 15 C 0.08 1.31 5.78 -1.68 -0.01 1.30 16 16 C 0.14 2.56 5.47 -62.55 -0.34 2.22 16 17 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 18 C -0.15 -2.46 6.86 -22.10 -0.15 -2.61 16 19 C 0.10 1.77 5.34 -60.97 -0.33 1.45 16 20 H 0.11 2.06 8.07 -51.93 -0.42 1.64 16 21 C 0.18 4.13 4.88 -0.30 0.00 4.13 16 22 N -0.60 -13.95 3.02 -154.77 -0.47 -14.42 16 23 C -0.23 -6.05 10.37 -15.06 -0.16 -6.21 16 24 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 25 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 26 N -0.92 -26.34 10.56 55.49 0.59 -25.75 16 27 Si 0.91 21.44 29.55 -169.99 -5.02 16.41 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.08 1.15 7.55 -51.93 -0.39 0.76 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.41 4.93 7.80 -40.82 -0.32 4.61 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.02 6.39 -51.93 -0.33 0.68 16 44 H 0.06 0.79 7.78 -51.93 -0.40 0.38 16 45 H 0.07 1.36 7.55 -51.93 -0.39 0.97 16 46 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 47 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 48 H 0.06 1.43 7.46 -51.93 -0.39 1.05 16 49 H 0.05 1.32 7.67 -51.93 -0.40 0.92 16 50 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -31.34 392.40 -9.99 -41.33 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.42 Total: 6.51 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.02 Total: 9.63 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.61 Total: -60.64 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.34 -9.99 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732144818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.320 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds