Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 N 1.46502 * 109.47129 * 240.00404 * 2 1 3 5 5 C 1.34772 * 120.00069 * 85.00272 * 4 2 1 6 6 O 1.21284 * 120.00132 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00176 * 180.02562 * 5 4 2 8 8 C 1.54269 * 110.03064 * 297.16153 * 7 5 4 9 9 C 1.54889 * 104.19788 * 217.10283 * 8 7 5 10 10 C 1.54889 * 102.74558 * 37.94239 * 9 8 7 11 11 C 1.53867 * 110.03630 * 179.97438 * 7 5 4 12 12 C 1.50703 * 109.47310 * 120.00104 * 2 1 3 13 13 O 1.21278 * 119.99994 * 93.15193 * 12 2 1 14 14 N 1.34776 * 119.99835 * 273.15406 * 12 2 1 15 15 C 1.47869 * 126.94364 * 5.11999 * 14 12 2 16 16 C 1.56019 * 105.10167 * 181.97975 * 15 14 12 17 17 H 1.08998 * 116.25015 * 158.83328 * 16 15 14 18 18 C 1.57082 * 99.60820 * 32.80742 * 16 15 14 19 19 C 1.49288 * 126.94080 * 184.80888 * 14 12 2 20 20 H 1.08998 * 116.15458 * 15.86099 * 19 14 12 21 21 C 1.58430 * 103.69890 * 246.54250 * 19 14 12 22 22 N 1.47864 * 104.83610 * 288.54852 * 21 19 14 23 23 C 1.36937 * 126.94753 * 182.31021 * 22 21 19 24 24 H 1.08003 * 120.00230 * 180.02562 * 23 22 21 25 25 C 1.38807 * 120.00142 * 359.97438 * 23 22 21 26 26 N 1.31628 * 119.99688 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00436 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47127 * 60.00134 * 27 25 23 29 29 H 1.48502 * 109.47609 * 180.02562 * 27 25 23 30 30 H 1.48507 * 109.47229 * 300.00561 * 27 25 23 31 31 H 1.08995 * 109.47417 * 295.00210 * 1 2 3 32 32 H 1.09007 * 109.46697 * 175.00318 * 1 2 3 33 33 H 1.09000 * 109.47148 * 55.00520 * 1 2 3 34 34 H 0.96996 * 119.99522 * 264.99372 * 4 2 1 35 35 H 1.09002 * 110.01954 * 58.59843 * 7 5 4 36 36 H 1.08999 * 110.48774 * 335.78683 * 8 7 5 37 37 H 1.09003 * 110.48366 * 98.42285 * 8 7 5 38 38 H 1.08994 * 110.75262 * 279.63076 * 9 8 7 39 39 H 1.09001 * 110.75563 * 156.25593 * 9 8 7 40 40 H 1.09003 * 110.48567 * 203.37745 * 10 9 8 41 41 H 1.09004 * 110.60154 * 80.79211 * 10 9 8 42 42 H 1.08995 * 110.03406 * 238.56856 * 11 7 5 43 43 H 1.09003 * 110.03324 * 359.95069 * 11 7 5 44 44 H 1.08997 * 110.31850 * 300.88801 * 15 14 12 45 45 H 1.09002 * 110.31617 * 63.07992 * 15 14 12 46 46 H 1.09007 * 112.36518 * 64.27368 * 18 16 15 47 47 H 1.09005 * 112.37399 * 191.71263 * 18 16 15 48 48 H 1.09001 * 110.19247 * 169.85463 * 21 19 14 49 49 H 1.08998 * 110.78527 * 47.54343 * 21 19 14 50 50 H 0.97004 * 119.99850 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8583 1.1586 -2.4116 7 6 2.6489 -0.7286 -3.5878 8 6 4.0904 -1.2281 -3.3588 9 6 4.7843 -1.0273 -4.7289 10 6 4.1800 0.3098 -5.2252 11 6 2.7054 0.2490 -4.7746 12 6 2.0324 -0.7104 1.2305 13 8 2.2890 -1.8949 1.1845 14 7 2.1965 -0.0295 2.3819 15 6 1.8350 1.3810 2.6396 16 6 2.2890 1.6555 4.1068 17 1 2.4437 2.7003 4.3761 18 6 3.5502 0.7211 4.1701 19 6 2.7740 -0.5488 3.6569 20 1 3.3340 -1.4812 3.5860 21 6 1.5469 -0.5319 4.6589 22 7 1.3063 0.8999 4.9388 23 6 0.3712 1.4265 5.7894 24 1 0.2921 2.4970 5.9091 25 6 -0.4757 0.5846 6.4969 26 7 -0.3796 -0.7199 6.3507 27 14 -1.7517 1.3030 7.6567 28 1 -2.6745 2.1819 6.8943 29 1 -2.5237 0.2019 8.2867 30 1 -1.0711 2.0963 8.7115 31 1 -0.3634 0.4343 0.9313 32 1 -0.3633 -1.0238 -0.0895 33 1 -0.3633 0.5894 -0.8419 34 1 2.2491 -1.6316 -1.1526 35 1 1.9957 -1.5679 -3.8265 36 1 4.5831 -0.6321 -2.5906 37 1 4.0893 -2.2825 -3.0825 38 1 4.5353 -1.8403 -5.4107 39 1 5.8639 -0.9413 -4.6062 40 1 4.2444 0.3777 -6.3112 41 1 4.6866 1.1556 -4.7604 42 1 2.0805 -0.1164 -5.5895 43 1 2.3690 1.2372 -4.4608 44 1 2.3639 2.0392 1.9503 45 1 0.7579 1.5191 2.5447 46 1 4.3352 1.0369 3.4830 47 1 3.9229 0.5956 5.1867 48 1 1.8041 -1.0591 5.5776 49 1 0.6663 -0.9809 4.1996 50 1 -0.9713 -1.3083 6.8454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732144818.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = -47.320837 kcal Electronic energy + Delta-G solvation = -30107.054676 eV Core-core repulsion = 26134.382051 eV Total energy + Delta-G solvation = -3972.672625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87986 -41.11016 -39.57016 -38.02932 -36.07709 -35.51334 -33.49992 -32.14889 -30.58177 -30.22665 -29.75125 -29.46126 -27.02252 -26.16182 -24.83398 -23.11499 -21.82905 -21.49280 -21.45303 -20.81261 -20.02928 -19.09884 -18.45040 -17.82651 -17.54456 -17.03354 -16.69061 -16.36475 -16.31243 -15.81926 -15.69040 -15.32381 -14.99102 -14.81705 -14.55028 -14.24354 -13.87863 -13.73630 -13.63176 -13.41400 -13.39350 -13.07978 -12.84636 -12.82445 -12.68313 -12.64401 -12.33531 -12.26087 -12.15889 -12.09753 -12.01447 -11.93295 -11.89408 -11.66210 -11.53698 -11.40060 -11.05839 -10.84974 -10.71886 -10.28751 -9.60528 -8.91789 -7.84898 -5.20427 1.37183 1.46969 1.49225 1.55006 1.55500 1.65988 2.28947 2.48160 3.23843 3.32763 3.44395 3.50718 3.65699 3.73852 3.77814 3.85624 3.91990 3.95247 3.99432 4.16724 4.24358 4.47790 4.48343 4.54094 4.55117 4.57576 4.63313 4.65627 4.69098 4.78768 4.81319 4.90585 4.98524 4.99825 5.01822 5.09972 5.11188 5.18866 5.24166 5.24741 5.26249 5.43812 5.44347 5.48498 5.51372 5.65843 6.09698 6.42939 6.53098 6.95413 7.03193 7.13012 7.70631 8.40902 9.25823 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.002553 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.131282 B =10964.707357 C =11246.229251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.140 3.860 3 H 0.108 0.892 4 N -0.708 5.708 5 C 0.521 3.479 6 O -0.574 6.574 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.524 3.476 13 O -0.578 6.578 14 N -0.603 5.603 15 C 0.086 3.914 16 C 0.136 3.864 17 H 0.134 0.866 18 C -0.128 4.128 19 C 0.101 3.899 20 H 0.120 0.880 21 C 0.188 3.812 22 N -0.616 5.616 23 C -0.230 4.230 24 H 0.095 0.905 25 C -0.070 4.070 26 N -0.956 5.956 27 Si 0.976 3.024 28 H -0.278 1.278 29 H -0.303 1.303 30 H -0.274 1.274 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.120 0.880 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.019 0.981 49 H -0.001 1.001 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.709 1.530 -21.044 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.031 3.969 3 H 0.126 0.874 4 N -0.361 5.361 5 C 0.309 3.691 6 O -0.453 6.453 7 C -0.129 4.129 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.161 4.161 11 C -0.158 4.158 12 C 0.313 3.687 13 O -0.459 6.459 14 N -0.335 5.335 15 C -0.039 4.039 16 C 0.029 3.971 17 H 0.151 0.849 18 C -0.167 4.167 19 C -0.002 4.002 20 H 0.137 0.863 21 C 0.062 3.938 22 N -0.340 5.340 23 C -0.359 4.359 24 H 0.112 0.888 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.805 3.195 28 H -0.204 1.204 29 H -0.230 1.230 30 H -0.200 1.200 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.252 0.748 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.075 0.925 46 H 0.122 0.878 47 H 0.102 0.898 48 H 0.037 0.963 49 H 0.018 0.982 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.417 1.658 -21.002 23.502 hybrid contribution -1.273 -0.563 1.280 1.891 sum 9.143 1.095 -19.722 21.766 Atomic orbital electron populations 1.21974 0.92366 1.03066 1.03270 1.20581 0.95979 0.97444 0.82893 0.87413 1.45847 1.67019 1.14981 1.08249 1.21231 0.75911 0.86934 0.84978 1.90654 1.51683 1.17656 1.85294 1.22045 0.99497 0.99768 0.91636 1.22392 0.92177 1.01947 0.98837 1.22502 0.99989 0.97621 0.95440 1.22378 0.94515 0.97835 1.01421 1.22182 0.98237 0.99392 0.95960 1.20496 0.77390 0.86621 0.84218 1.90634 1.53972 1.16081 1.85199 1.49223 1.59799 1.13930 1.10531 1.23327 1.00117 0.80692 0.99716 1.23552 0.88429 0.97404 0.87694 0.84870 1.24100 0.96729 0.94008 1.01890 1.24768 0.95048 0.98737 0.81606 0.86254 1.21976 0.92349 0.85659 0.93803 1.45445 1.38096 1.01677 1.48816 1.19479 1.08503 0.92323 1.15572 0.88776 1.25638 1.02247 0.95819 1.02589 1.70137 1.41592 1.02649 1.46134 0.85179 0.78868 0.76545 0.78901 1.20379 1.22975 1.19985 0.91743 0.91954 0.90237 0.74819 0.86202 0.92611 0.89319 0.89680 0.90660 0.90084 0.92658 0.89916 0.91722 0.88603 0.92538 0.87823 0.89827 0.96332 0.98238 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.47 71.98 0.68 -3.47 16 2 C 0.14 3.95 2.51 44.25 0.11 4.06 16 3 H 0.11 3.03 6.77 -2.39 -0.02 3.01 16 4 N -0.71 -17.25 5.00 -446.09 -2.23 -19.48 16 5 C 0.52 12.44 6.96 87.66 0.61 13.05 16 6 O -0.57 -17.56 14.87 -3.04 -0.05 -17.61 16 7 C -0.11 -1.77 3.30 -10.82 -0.04 -1.81 16 8 C -0.12 -1.61 6.31 31.67 0.20 -1.41 16 9 C -0.12 -1.30 6.91 31.89 0.22 -1.08 16 10 C -0.12 -1.64 6.83 31.68 0.22 -1.42 16 11 C -0.12 -1.94 6.40 31.33 0.20 -1.74 16 12 C 0.52 17.85 7.09 87.66 0.62 18.47 16 13 O -0.58 -22.47 16.40 -3.02 -0.05 -22.52 16 14 N -0.60 -20.77 2.95 -762.91 -2.25 -23.02 16 15 C 0.09 2.68 5.78 87.16 0.50 3.19 16 16 C 0.14 4.58 5.47 46.93 0.26 4.84 16 17 H 0.13 3.80 8.14 -2.39 -0.02 3.78 16 18 C -0.13 -3.84 6.86 33.59 0.23 -3.61 16 19 C 0.10 3.74 5.34 47.96 0.26 4.00 16 20 H 0.12 4.28 8.07 -2.39 -0.02 4.26 16 21 C 0.19 9.15 4.88 88.06 0.43 9.58 16 22 N -0.62 -28.94 3.02 -643.56 -1.95 -30.89 16 23 C -0.23 -12.02 10.37 84.03 0.87 -11.15 16 24 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 25 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 26 N -0.96 -57.50 10.56 21.65 0.23 -57.27 16 27 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 30 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 31 H 0.06 1.95 7.55 -2.39 -0.02 1.94 16 32 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.41 9.43 7.80 -92.71 -0.72 8.70 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 0.96 7.85 -2.39 -0.02 0.94 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.42 6.39 -2.39 -0.02 1.40 16 44 H 0.10 2.31 7.78 -2.39 -0.02 2.30 16 45 H 0.06 2.01 7.55 -2.39 -0.02 1.99 16 46 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 48 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 49 H 0.00 -0.03 7.67 -2.39 -0.02 -0.05 16 50 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.27 392.40 1.79 -69.48 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.21 Total: 26.30 kcal Atomic # 6 Polarization: 22.20 SS G_CDS: 5.84 Total: 28.04 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -6.20 Total: -130.65 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.09 Total: -40.13 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.27 1.79 -69.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732144818.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.159 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds