Wall clock time and date at job start Tue Mar 31 2020 18:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47445 * 2 1 4 4 N 1.46507 * 109.47008 * 120.00235 * 2 1 3 5 5 C 1.34776 * 119.99595 * 274.99766 * 4 2 1 6 6 O 1.21276 * 120.00170 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.54271 * 110.03132 * 297.16850 * 7 5 4 9 9 C 1.54891 * 104.19326 * 217.10466 * 8 7 5 10 10 C 1.54892 * 102.74975 * 37.93864 * 9 8 7 11 11 C 1.53866 * 110.03189 * 179.97438 * 7 5 4 12 12 C 1.50703 * 109.47120 * 239.99510 * 2 1 3 13 13 O 1.21282 * 120.00159 * 266.73701 * 12 2 1 14 14 N 1.34775 * 119.99702 * 86.73107 * 12 2 1 15 15 C 1.49960 * 126.74468 * 355.47737 * 14 12 2 16 16 C 1.56020 * 104.10207 * 182.13281 * 15 14 12 17 17 H 1.08995 * 116.25069 * 159.12371 * 16 15 14 18 18 C 1.57084 * 100.41896 * 32.48566 * 16 15 14 19 19 C 1.49291 * 126.94665 * 175.12258 * 14 12 2 20 20 H 1.08998 * 116.78664 * 16.30697 * 19 14 12 21 21 C 1.56022 * 104.08833 * 246.69954 * 19 14 12 22 22 N 1.47864 * 105.10465 * 288.76470 * 21 19 14 23 23 C 1.36937 * 126.94355 * 182.02751 * 22 21 19 24 24 H 1.08007 * 120.00266 * 179.97438 * 23 22 21 25 25 C 1.38819 * 120.00097 * 359.97381 * 23 22 21 26 26 N 1.31619 * 119.99983 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99777 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47681 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46971 * 120.00000 * 27 25 23 30 30 H 1.48507 * 109.46959 * 239.99370 * 27 25 23 31 31 H 1.09003 * 109.47075 * 305.00378 * 1 2 3 32 32 H 1.08997 * 109.47317 * 65.00356 * 1 2 3 33 33 H 1.09003 * 109.47500 * 185.00447 * 1 2 3 34 34 H 0.96996 * 120.00112 * 94.99230 * 4 2 1 35 35 H 1.09006 * 110.01577 * 58.60416 * 7 5 4 36 36 H 1.09000 * 110.48219 * 335.78052 * 8 7 5 37 37 H 1.09001 * 110.48657 * 98.42597 * 8 7 5 38 38 H 1.09007 * 110.75384 * 279.62672 * 9 8 7 39 39 H 1.08993 * 110.75883 * 156.25835 * 9 8 7 40 40 H 1.09000 * 110.48654 * 203.37726 * 10 9 8 41 41 H 1.09003 * 110.59540 * 80.79094 * 10 9 8 42 42 H 1.08999 * 110.03798 * 238.56823 * 11 7 5 43 43 H 1.08993 * 110.03482 * 359.95318 * 11 7 5 44 44 H 1.08996 * 110.55772 * 63.67359 * 15 14 12 45 45 H 1.08994 * 111.03686 * 300.82547 * 15 14 12 46 46 H 1.09000 * 112.36608 * 64.87549 * 18 16 15 47 47 H 1.09002 * 112.36739 * 192.32182 * 18 16 15 48 48 H 1.09000 * 110.31262 * 169.85388 * 21 19 14 49 49 H 1.08999 * 110.31649 * 47.67405 * 21 19 14 50 50 H 0.96993 * 120.00024 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5878 8 6 1.6677 -1.8503 3.9874 9 6 1.6736 -1.8260 5.5361 10 6 1.7575 -0.3124 5.8540 11 6 2.7064 0.2490 4.7743 12 6 2.0323 -0.7105 -1.2304 13 8 2.2908 -1.8946 -1.1839 14 7 2.1942 -0.0302 -2.3825 15 6 1.8347 1.4035 -2.6359 16 6 2.1894 1.6244 -4.1391 17 1 1.6988 2.4638 -4.6318 18 6 1.8829 0.1960 -4.7162 19 6 2.7726 -0.5489 -3.6573 20 1 2.8458 -1.6317 -3.7588 21 6 4.1015 0.2513 -3.8248 22 7 3.6821 1.6282 -4.1635 23 6 4.4980 2.6916 -4.4437 24 1 4.0688 3.6544 -4.6788 25 6 5.8769 2.5323 -4.4255 26 7 6.4001 1.3591 -4.1385 27 14 6.9899 3.9832 -4.8069 28 1 6.1607 5.1810 -5.0949 29 1 7.8655 4.2559 -3.6389 30 1 7.8285 3.6659 -5.9908 31 1 -0.3633 0.5895 0.8418 32 1 -0.3634 0.4342 -0.9314 33 1 -0.3634 -1.0237 0.0896 34 1 2.2489 -1.6318 1.1527 35 1 3.6380 -1.1466 3.4002 36 1 0.6689 -1.6370 3.6064 37 1 2.0196 -2.8141 3.6196 38 1 2.5447 -2.3517 5.9273 39 1 0.7529 -2.2536 5.9327 40 1 2.1749 -0.1540 6.8484 41 1 0.7739 0.1509 5.7759 42 1 3.7232 0.3050 5.1631 43 1 2.3723 1.2377 4.4599 44 1 2.4297 2.0644 -2.0056 45 1 0.7715 1.5757 -2.4687 46 1 0.8264 -0.0625 -4.6444 47 1 2.2679 0.0658 -5.7276 48 1 4.6988 -0.1719 -4.6323 49 1 4.6663 0.2463 -2.8926 50 1 7.3635 1.2477 -4.1261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732144821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:26 Heat of formation + Delta-G solvation = -27.288613 kcal Electronic energy + Delta-G solvation = -30175.195938 eV Core-core repulsion = 26203.391976 eV Total energy + Delta-G solvation = -3971.803963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57346 -39.85781 -38.21103 -37.13278 -34.85874 -33.65706 -31.90209 -30.85684 -29.20985 -28.90839 -28.72903 -28.55705 -25.30388 -24.76436 -23.33704 -21.99127 -20.94622 -20.33288 -19.92740 -19.70904 -18.59452 -17.85939 -16.94990 -16.52295 -16.21359 -15.63792 -15.47647 -15.28124 -14.87973 -14.70897 -14.21030 -13.88750 -13.67177 -13.58230 -13.38158 -13.23705 -12.62458 -12.57316 -12.14908 -11.96162 -11.84421 -11.67782 -11.64177 -11.52522 -11.34787 -11.33697 -11.30073 -11.07635 -11.00889 -10.90938 -10.83606 -10.70231 -10.63492 -10.31387 -10.08620 -9.80078 -9.68367 -9.60603 -9.10735 -8.74526 -8.12525 -6.97373 -5.80542 -3.15141 2.56382 2.75140 3.02638 3.35524 3.40867 3.43714 3.45457 4.25422 4.36715 4.38896 4.49369 4.57220 4.95091 5.04636 5.10817 5.14541 5.14841 5.17422 5.22414 5.27232 5.31313 5.39293 5.43581 5.51971 5.52973 5.59547 5.60539 5.68542 5.70345 5.73523 5.85720 5.88022 5.93891 6.02815 6.08267 6.11663 6.16546 6.18337 6.32867 6.36906 6.44312 6.54083 6.61181 7.37334 7.41795 7.49359 7.67528 7.92157 8.05806 8.19722 8.39447 9.06489 9.67483 10.35691 11.31733 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.002984 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.768464 B = 9381.247369 C =10450.764974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 H 0.108 0.892 4 N -0.711 5.711 5 C 0.522 3.478 6 O -0.539 6.539 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.526 3.474 13 O -0.557 6.557 14 N -0.602 5.602 15 C 0.081 3.919 16 C 0.140 3.860 17 H 0.107 0.893 18 C -0.150 4.150 19 C 0.099 3.901 20 H 0.115 0.885 21 C 0.174 3.826 22 N -0.598 5.598 23 C -0.232 4.232 24 H 0.082 0.918 25 C -0.006 4.006 26 N -0.919 5.919 27 Si 0.913 3.087 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.057 0.943 49 H 0.047 0.953 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 -6.104 13.207 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.125 0.875 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.416 6.416 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.161 4.161 11 C -0.157 4.157 12 C 0.314 3.686 13 O -0.436 6.436 14 N -0.335 5.335 15 C -0.043 4.043 16 C 0.031 3.969 17 H 0.124 0.876 18 C -0.190 4.190 19 C -0.003 4.003 20 H 0.133 0.867 21 C 0.049 3.951 22 N -0.322 5.322 23 C -0.359 4.359 24 H 0.100 0.900 25 C -0.203 4.203 26 N -0.566 5.566 27 Si 0.743 3.257 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.103 0.897 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.293 -5.836 13.303 19.030 hybrid contribution 0.955 0.296 -0.232 1.027 sum -11.338 -5.540 13.071 18.168 Atomic orbital electron populations 1.22033 0.92958 1.02904 1.03211 1.20740 0.95591 0.98079 0.83604 0.87460 1.45807 1.67372 1.14766 1.08539 1.20599 0.77070 0.87149 0.84333 1.90665 1.50223 1.15982 1.84729 1.21951 1.00963 0.97158 0.93363 1.22364 0.99038 0.97389 0.96511 1.22501 1.01880 0.96702 0.95017 1.22371 0.99912 0.95334 0.98508 1.22178 1.00103 1.00133 0.93318 1.20035 0.78112 0.86793 0.83706 1.90642 1.53279 1.15261 1.84425 1.49685 1.59994 1.12955 1.10826 1.23775 0.98453 0.80866 1.01251 1.23178 0.87204 0.95535 0.91005 0.87565 1.24151 0.98260 0.97657 0.98898 1.24362 0.96357 0.98762 0.80857 0.86734 1.21932 0.89650 0.83325 1.00178 1.45254 0.98418 1.07246 1.81280 1.19099 0.87246 0.88808 1.40786 0.90037 1.24827 0.96675 0.97107 1.01665 1.69917 1.10725 1.21585 1.54367 0.86037 0.80742 0.81355 0.77538 1.20417 1.21754 1.21729 0.91063 0.91071 0.91827 0.75431 0.88224 0.91094 0.90719 0.91213 0.91378 0.91579 0.91563 0.91399 0.89102 0.90540 0.92147 0.91479 0.89725 0.92503 0.93526 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.47 37.16 0.35 -1.50 16 2 C 0.13 1.90 2.51 -69.08 -0.17 1.73 16 3 H 0.11 1.76 6.90 -51.93 -0.36 1.40 16 4 N -0.71 -9.73 5.00 -54.93 -0.27 -10.00 16 5 C 0.52 7.16 6.96 -10.98 -0.08 7.09 16 6 O -0.54 -9.11 14.87 5.56 0.08 -9.02 16 7 C -0.11 -1.17 3.30 -90.65 -0.30 -1.47 16 8 C -0.12 -0.96 6.31 -25.07 -0.16 -1.12 16 9 C -0.12 -0.89 6.91 -24.74 -0.17 -1.07 16 10 C -0.12 -1.01 6.83 -25.04 -0.17 -1.18 16 11 C -0.12 -1.21 6.40 -25.59 -0.16 -1.37 16 12 C 0.53 9.19 7.09 -10.98 -0.08 9.12 16 13 O -0.56 -10.88 16.40 5.56 0.09 -10.79 16 14 N -0.60 -10.69 2.99 -155.07 -0.46 -11.16 16 15 C 0.08 1.34 5.88 -0.49 0.00 1.34 16 16 C 0.14 2.50 5.46 -62.55 -0.34 2.16 16 17 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 18 C -0.15 -2.44 6.82 -22.30 -0.15 -2.59 16 19 C 0.10 1.85 5.24 -62.55 -0.33 1.52 16 20 H 0.11 2.08 8.07 -51.93 -0.42 1.66 16 21 C 0.17 4.10 4.76 -1.68 -0.01 4.09 16 22 N -0.60 -14.08 3.01 -156.34 -0.47 -14.55 16 23 C -0.23 -6.09 10.38 -15.06 -0.16 -6.24 16 24 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 25 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 26 N -0.92 -26.57 10.56 55.49 0.59 -25.99 16 27 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.41 5.25 7.80 -40.82 -0.32 4.93 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.13 6.39 -51.93 -0.33 0.80 16 44 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 45 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.06 1.47 7.46 -51.93 -0.39 1.09 16 49 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -32.00 392.45 -10.01 -42.01 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.43 Total: 6.70 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -2.02 Total: 10.24 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.62 Total: -61.69 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.17 Total: -19.82 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.00 -10.01 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732144821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.721 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds