Wall clock time and date at job start Tue Mar 31 2020 18:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47445 * 2 1 4 4 N 1.46507 * 109.47008 * 120.00235 * 2 1 3 5 5 C 1.34776 * 119.99595 * 274.99766 * 4 2 1 6 6 O 1.21276 * 120.00170 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.54271 * 110.03132 * 297.16850 * 7 5 4 9 9 C 1.54891 * 104.19326 * 217.10466 * 8 7 5 10 10 C 1.54892 * 102.74975 * 37.93864 * 9 8 7 11 11 C 1.53866 * 110.03189 * 179.97438 * 7 5 4 12 12 C 1.50703 * 109.47120 * 239.99510 * 2 1 3 13 13 O 1.21282 * 120.00159 * 266.73701 * 12 2 1 14 14 N 1.34775 * 119.99702 * 86.73107 * 12 2 1 15 15 C 1.49960 * 126.74468 * 355.47737 * 14 12 2 16 16 C 1.56020 * 104.10207 * 182.13281 * 15 14 12 17 17 H 1.08995 * 116.25069 * 159.12371 * 16 15 14 18 18 C 1.57084 * 100.41896 * 32.48566 * 16 15 14 19 19 C 1.49291 * 126.94665 * 175.12258 * 14 12 2 20 20 H 1.08998 * 116.78664 * 16.30697 * 19 14 12 21 21 C 1.56022 * 104.08833 * 246.69954 * 19 14 12 22 22 N 1.47864 * 105.10465 * 288.76470 * 21 19 14 23 23 C 1.36937 * 126.94355 * 182.02751 * 22 21 19 24 24 H 1.08007 * 120.00266 * 179.97438 * 23 22 21 25 25 C 1.38819 * 120.00097 * 359.97381 * 23 22 21 26 26 N 1.31619 * 119.99983 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99777 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47681 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46971 * 120.00000 * 27 25 23 30 30 H 1.48507 * 109.46959 * 239.99370 * 27 25 23 31 31 H 1.09003 * 109.47075 * 305.00378 * 1 2 3 32 32 H 1.08997 * 109.47317 * 65.00356 * 1 2 3 33 33 H 1.09003 * 109.47500 * 185.00447 * 1 2 3 34 34 H 0.96996 * 120.00112 * 94.99230 * 4 2 1 35 35 H 1.09006 * 110.01577 * 58.60416 * 7 5 4 36 36 H 1.09000 * 110.48219 * 335.78052 * 8 7 5 37 37 H 1.09001 * 110.48657 * 98.42597 * 8 7 5 38 38 H 1.09007 * 110.75384 * 279.62672 * 9 8 7 39 39 H 1.08993 * 110.75883 * 156.25835 * 9 8 7 40 40 H 1.09000 * 110.48654 * 203.37726 * 10 9 8 41 41 H 1.09003 * 110.59540 * 80.79094 * 10 9 8 42 42 H 1.08999 * 110.03798 * 238.56823 * 11 7 5 43 43 H 1.08993 * 110.03482 * 359.95318 * 11 7 5 44 44 H 1.08996 * 110.55772 * 63.67359 * 15 14 12 45 45 H 1.08994 * 111.03686 * 300.82547 * 15 14 12 46 46 H 1.09000 * 112.36608 * 64.87549 * 18 16 15 47 47 H 1.09002 * 112.36739 * 192.32182 * 18 16 15 48 48 H 1.09000 * 110.31262 * 169.85388 * 21 19 14 49 49 H 1.08999 * 110.31649 * 47.67405 * 21 19 14 50 50 H 0.96993 * 120.00024 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6488 -0.7289 3.5878 8 6 1.6677 -1.8503 3.9874 9 6 1.6736 -1.8260 5.5361 10 6 1.7575 -0.3124 5.8540 11 6 2.7064 0.2490 4.7743 12 6 2.0323 -0.7105 -1.2304 13 8 2.2908 -1.8946 -1.1839 14 7 2.1942 -0.0302 -2.3825 15 6 1.8347 1.4035 -2.6359 16 6 2.1894 1.6244 -4.1391 17 1 1.6988 2.4638 -4.6318 18 6 1.8829 0.1960 -4.7162 19 6 2.7726 -0.5489 -3.6573 20 1 2.8458 -1.6317 -3.7588 21 6 4.1015 0.2513 -3.8248 22 7 3.6821 1.6282 -4.1635 23 6 4.4980 2.6916 -4.4437 24 1 4.0688 3.6544 -4.6788 25 6 5.8769 2.5323 -4.4255 26 7 6.4001 1.3591 -4.1385 27 14 6.9899 3.9832 -4.8069 28 1 6.1607 5.1810 -5.0949 29 1 7.8655 4.2559 -3.6389 30 1 7.8285 3.6659 -5.9908 31 1 -0.3633 0.5895 0.8418 32 1 -0.3634 0.4342 -0.9314 33 1 -0.3634 -1.0237 0.0896 34 1 2.2489 -1.6318 1.1527 35 1 3.6380 -1.1466 3.4002 36 1 0.6689 -1.6370 3.6064 37 1 2.0196 -2.8141 3.6196 38 1 2.5447 -2.3517 5.9273 39 1 0.7529 -2.2536 5.9327 40 1 2.1749 -0.1540 6.8484 41 1 0.7739 0.1509 5.7759 42 1 3.7232 0.3050 5.1631 43 1 2.3723 1.2377 4.4599 44 1 2.4297 2.0644 -2.0056 45 1 0.7715 1.5757 -2.4687 46 1 0.8264 -0.0625 -4.6444 47 1 2.2679 0.0658 -5.7276 48 1 4.6988 -0.1719 -4.6323 49 1 4.6663 0.2463 -2.8926 50 1 7.3635 1.2477 -4.1261 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732144821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:25 Heat of formation + Delta-G solvation = -47.522985 kcal Electronic energy + Delta-G solvation = -30176.073366 eV Core-core repulsion = 26203.391976 eV Total energy + Delta-G solvation = -3972.681391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85522 -41.12653 -39.59400 -38.04305 -36.07809 -35.45980 -33.48435 -32.12714 -30.66082 -30.27226 -29.75265 -29.49704 -27.00871 -26.10252 -24.85512 -23.13973 -21.84269 -21.47148 -21.40537 -20.83265 -20.07266 -19.10308 -18.48341 -17.84723 -17.54076 -17.05721 -16.64891 -16.42562 -16.20165 -15.83391 -15.75856 -15.40400 -15.03515 -14.67883 -14.48404 -14.20410 -13.91340 -13.90511 -13.59615 -13.45880 -13.20628 -13.10455 -12.84782 -12.79960 -12.73357 -12.65897 -12.35936 -12.28706 -12.14415 -12.03498 -12.02299 -11.94726 -11.90327 -11.67460 -11.54468 -11.42557 -11.06754 -10.87096 -10.74538 -10.28542 -9.62974 -8.93113 -7.86909 -5.22052 1.31449 1.45034 1.45775 1.55582 1.56462 1.72855 2.24293 2.46588 3.19390 3.31966 3.43826 3.48253 3.64171 3.73813 3.78131 3.87869 3.96965 3.99149 4.05514 4.19761 4.23146 4.45047 4.47526 4.52900 4.55284 4.62782 4.64904 4.66653 4.68168 4.78368 4.80607 4.91069 4.97030 5.01176 5.08033 5.08571 5.12765 5.19573 5.22708 5.23831 5.25127 5.41237 5.43064 5.46695 5.49831 5.63706 6.08390 6.40439 6.50716 6.96322 7.01659 7.11311 7.69239 8.39101 9.24402 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.002984 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.768464 B = 9381.247369 C =10450.764974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.089 0.911 4 N -0.710 5.710 5 C 0.519 3.481 6 O -0.575 6.575 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.525 3.475 13 O -0.579 6.579 14 N -0.605 5.605 15 C 0.089 3.911 16 C 0.133 3.867 17 H 0.135 0.865 18 C -0.126 4.126 19 C 0.104 3.896 20 H 0.120 0.880 21 C 0.186 3.814 22 N -0.618 5.618 23 C -0.228 4.228 24 H 0.095 0.905 25 C -0.072 4.072 26 N -0.956 5.956 27 Si 0.975 3.025 28 H -0.259 1.259 29 H -0.302 1.302 30 H -0.295 1.295 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.414 0.586 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.020 0.980 49 H -0.006 1.006 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.246 -6.201 13.691 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.107 0.893 4 N -0.363 5.363 5 C 0.307 3.693 6 O -0.454 6.454 7 C -0.133 4.133 8 C -0.150 4.150 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.160 4.160 12 C 0.313 3.687 13 O -0.460 6.460 14 N -0.338 5.338 15 C -0.035 4.035 16 C 0.027 3.973 17 H 0.153 0.847 18 C -0.165 4.165 19 C 0.001 3.999 20 H 0.138 0.862 21 C 0.060 3.940 22 N -0.343 5.343 23 C -0.357 4.357 24 H 0.113 0.887 25 C -0.265 4.265 26 N -0.606 5.606 27 Si 0.804 3.196 28 H -0.183 1.183 29 H -0.229 1.229 30 H -0.223 1.223 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.251 0.749 35 H 0.128 0.872 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.038 0.962 49 H 0.012 0.988 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.085 -5.922 13.784 21.275 hybrid contribution 1.789 0.340 -0.371 1.859 sum -13.295 -5.582 13.413 19.693 Atomic orbital electron populations 1.21983 0.90339 1.03638 1.04112 1.20697 0.97492 0.96623 0.82778 0.89265 1.45858 1.67238 1.14938 1.08282 1.21227 0.76221 0.86805 0.85024 1.90647 1.51872 1.17605 1.85322 1.22054 1.01899 0.97657 0.91689 1.22386 0.98026 0.97032 0.97516 1.22503 1.03129 0.95900 0.93947 1.22365 0.99056 0.96032 0.98444 1.22190 1.01095 0.98768 0.93958 1.20481 0.77484 0.86616 0.84093 1.90626 1.54215 1.16398 1.84773 1.49738 1.59855 1.13494 1.10718 1.23686 1.00723 0.79589 0.99484 1.23614 0.83738 0.97705 0.92255 0.84734 1.24052 0.99824 0.95113 0.97483 1.24186 0.94262 0.98654 0.82800 0.86230 1.21538 0.91575 0.84640 0.96209 1.45518 1.01233 1.06518 1.81009 1.19569 0.87756 0.90013 1.38321 0.88711 1.25646 0.98447 0.99350 1.03020 1.70152 1.10028 1.23638 1.56764 0.85048 0.78835 0.79304 0.76406 1.18264 1.22930 1.22255 0.90958 0.89464 0.90995 0.74862 0.87220 0.91710 0.89242 0.90024 0.90071 0.90209 0.92228 0.90549 0.91873 0.93168 0.87338 0.87389 0.90040 0.96172 0.98786 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.47 71.98 0.68 -2.45 16 2 C 0.13 3.84 2.51 44.24 0.11 3.95 16 3 H 0.09 2.94 6.90 -2.39 -0.02 2.92 16 4 N -0.71 -19.16 5.00 -446.09 -2.23 -21.39 16 5 C 0.52 14.26 6.96 87.66 0.61 14.87 16 6 O -0.58 -19.84 14.87 -3.02 -0.04 -19.88 16 7 C -0.11 -2.23 3.30 -10.82 -0.04 -2.27 16 8 C -0.11 -1.66 6.31 31.67 0.20 -1.46 16 9 C -0.12 -1.41 6.91 31.89 0.22 -1.19 16 10 C -0.12 -1.81 6.83 31.69 0.22 -1.60 16 11 C -0.12 -2.42 6.40 31.33 0.20 -2.22 16 12 C 0.52 17.92 7.09 87.66 0.62 18.54 16 13 O -0.58 -22.34 16.40 -3.04 -0.05 -22.39 16 14 N -0.61 -20.85 2.99 -762.91 -2.28 -23.13 16 15 C 0.09 2.74 5.88 86.75 0.51 3.25 16 16 C 0.13 4.45 5.46 46.93 0.26 4.70 16 17 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 18 C -0.13 -3.71 6.82 33.46 0.23 -3.48 16 19 C 0.10 3.84 5.24 46.93 0.25 4.08 16 20 H 0.12 4.30 8.07 -2.39 -0.02 4.28 16 21 C 0.19 9.14 4.76 87.17 0.42 9.55 16 22 N -0.62 -29.30 3.01 -648.53 -1.95 -31.25 16 23 C -0.23 -12.04 10.38 84.04 0.87 -11.17 16 24 H 0.10 4.65 7.83 -2.91 -0.02 4.63 16 25 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 26 N -0.96 -58.24 10.56 21.65 0.23 -58.01 16 27 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 30 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.63 7.49 -2.39 -0.02 1.61 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 10.39 7.80 -92.71 -0.72 9.66 16 35 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.06 1.05 7.85 -2.39 -0.02 1.03 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.62 6.39 -2.39 -0.02 1.61 16 44 H 0.05 1.84 7.98 -2.39 -0.02 1.82 16 45 H 0.11 2.38 7.48 -2.39 -0.02 2.36 16 46 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.02 1.12 7.46 -2.39 -0.02 1.10 16 49 H -0.01 -0.36 7.68 -2.39 -0.02 -0.37 16 50 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -74.03 392.45 1.73 -72.30 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.21 Total: 26.62 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 5.82 Total: 29.53 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -6.23 Total: -133.78 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.09 Total: -42.28 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.03 1.73 -72.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732144821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.777 kcal (2) G-P(sol) polarization free energy of solvation -74.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds