Wall clock time and date at job start Tue Mar 31 2020 19:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47032 * 2 1 4 4 C 1.46501 * 119.99964 * 270.00095 * 3 2 1 5 5 C 1.53001 * 109.46966 * 270.00250 * 4 3 2 6 6 C 1.39051 * 120.00188 * 90.00325 * 3 2 1 7 7 C 1.39219 * 119.93293 * 179.97438 * 6 3 2 8 8 C 1.37600 * 120.07086 * 179.97438 * 7 6 3 9 9 C 1.39796 * 119.93118 * 0.02562 * 8 7 6 10 10 C 1.47527 * 120.07115 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99754 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99925 * 14 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 18 18 N 1.46499 * 109.47658 * 184.99947 * 17 14 13 19 19 C 1.36939 * 120.00451 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99755 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99649 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47262 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46934 * 120.00041 * 23 21 19 26 26 H 1.48502 * 109.46980 * 239.99932 * 23 21 19 27 27 C 1.39802 * 119.86130 * 0.27821 * 9 8 7 28 28 C 1.37608 * 119.92552 * 359.42162 * 27 9 8 29 29 H 1.09005 * 109.47012 * 300.00333 * 1 2 3 30 30 H 1.09005 * 109.46991 * 59.99694 * 1 2 3 31 31 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46470 * 239.99999 * 2 1 3 33 33 H 1.09000 * 109.46933 * 119.99818 * 2 1 3 34 34 H 1.08996 * 109.47306 * 30.00034 * 4 3 2 35 35 H 1.08997 * 109.47289 * 150.00282 * 4 3 2 36 36 H 1.09003 * 109.47271 * 299.99896 * 5 4 3 37 37 H 1.08997 * 109.47091 * 59.99910 * 5 4 3 38 38 H 1.09000 * 109.46953 * 180.02562 * 5 4 3 39 39 H 1.08002 * 119.96327 * 0.02562 * 7 6 3 40 40 H 1.08004 * 120.03892 * 179.97438 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 43 43 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 44 44 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 45 45 H 1.09001 * 109.47563 * 305.00337 * 17 14 13 46 46 H 1.09004 * 109.47313 * 64.99993 * 17 14 13 47 47 H 0.97002 * 119.99938 * 0.02562 * 18 17 14 48 48 H 0.96998 * 119.99824 * 179.97438 * 22 21 19 49 49 H 1.08002 * 120.03516 * 179.72533 * 27 9 8 50 50 H 1.08001 * 119.96135 * 180.29845 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2502 2.0367 1.2042 7 6 2.7147 3.3491 1.2025 8 6 2.9446 4.0006 2.3925 9 6 2.7116 3.3432 3.6040 10 6 2.9565 4.0390 4.8816 11 8 3.3609 5.1857 4.8816 12 7 2.7319 3.4036 6.0488 13 6 2.9746 4.0948 7.3175 14 6 2.6430 3.1576 8.4804 15 1 3.2738 2.2705 8.4235 16 8 1.2694 2.7708 8.4038 17 6 2.8970 3.8791 9.8054 18 7 2.6945 2.9459 10.9164 19 6 2.8661 3.3702 12.2071 20 1 3.1503 4.3930 12.4059 21 6 2.6737 2.4860 13.2597 22 7 2.3269 1.2397 13.0173 23 14 2.9072 3.0651 15.0203 24 1 3.2935 4.4990 15.0228 25 1 1.6369 2.8939 15.7702 26 1 3.9761 2.2628 15.6677 27 6 2.2512 2.0232 3.6024 28 6 2.0174 1.3792 2.4090 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 4.3883 2.2154 -0.9508 37 1 3.8744 0.7621 -1.8408 38 1 3.8892 2.3455 -2.6542 39 1 2.8941 3.8566 0.2662 40 1 3.3053 5.0186 2.3906 41 1 2.4090 2.4890 6.0488 42 1 4.0222 4.3902 7.3758 43 1 2.3433 4.9816 7.3747 44 1 0.6492 3.5113 8.4485 45 1 3.9211 4.2516 9.8259 46 1 2.2043 4.7152 9.9025 47 1 2.4389 2.0274 10.7378 48 1 2.1928 0.6218 13.7529 49 1 2.0745 1.5111 4.5367 50 1 1.6571 0.3610 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732663981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:52 Heat of formation + Delta-G solvation = -46.427422 kcal Electronic energy + Delta-G solvation = -27944.568018 eV Core-core repulsion = 23971.934135 eV Total energy + Delta-G solvation = -3972.633884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44818 -39.34421 -37.63902 -36.76673 -34.36293 -33.96914 -33.02670 -31.64952 -31.20076 -30.87519 -29.25098 -28.16370 -25.48505 -24.52560 -23.91818 -22.60821 -22.16170 -21.41112 -21.20503 -19.94760 -18.47639 -17.29861 -17.09401 -16.73366 -16.12742 -15.89689 -15.50246 -15.25424 -14.90289 -14.63717 -14.45814 -14.39601 -14.16952 -13.97776 -13.73242 -13.54036 -13.39155 -13.09065 -12.92933 -12.84106 -12.68296 -12.49046 -12.30559 -12.24405 -12.23196 -11.80838 -11.64956 -11.49160 -10.97648 -10.95009 -10.82484 -10.57985 -10.19272 -10.13660 -9.97364 -9.78558 -9.45796 -9.23489 -9.01468 -8.89266 -7.66479 -6.92385 -5.75238 -3.04664 0.90153 1.22203 2.60453 2.89822 3.23813 3.44395 3.50027 3.52315 3.82338 4.31516 4.35489 4.56266 4.59883 4.64447 4.69623 4.72670 4.82905 4.85881 4.88209 4.92634 4.95939 5.04113 5.12756 5.19290 5.29777 5.33302 5.35138 5.37337 5.43655 5.57454 5.66806 5.67522 5.73309 5.79397 5.85471 5.93549 5.99622 6.09470 6.22009 6.28467 6.45296 6.52513 6.55220 6.70470 6.83146 7.08657 7.59545 7.70399 7.96620 8.31252 8.43006 9.54724 10.11496 10.47235 11.47258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.001740 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.022527 B =16090.032733 C =16925.568451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.115 3.885 3 N -0.622 5.622 4 C 0.115 3.885 5 C -0.173 4.173 6 C 0.242 3.758 7 C -0.211 4.211 8 C -0.009 4.009 9 C -0.196 4.196 10 C 0.561 3.439 11 O -0.551 6.551 12 N -0.719 5.719 13 C 0.091 3.909 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.553 6.553 17 C 0.127 3.873 18 N -0.726 5.726 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.033 4.033 28 C -0.208 4.208 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.403 0.597 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.373 0.627 45 H 0.029 0.971 46 H 0.023 0.977 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.127 0.873 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -1.615 -33.940 34.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.008 4.008 3 N -0.330 5.330 4 C -0.008 4.008 5 C -0.232 4.232 6 C 0.138 3.862 7 C -0.233 4.233 8 C -0.029 4.029 9 C -0.201 4.201 10 C 0.350 3.650 11 O -0.430 6.430 12 N -0.371 5.371 13 C -0.034 4.034 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.358 6.358 17 C -0.002 4.002 18 N -0.371 5.371 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.052 4.052 28 C -0.230 4.230 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.239 0.761 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.220 0.780 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.144 0.856 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.273 -1.389 -33.992 34.044 hybrid contribution -0.326 0.042 1.009 1.061 sum -1.599 -1.347 -32.982 33.049 Atomic orbital electron populations 1.22234 0.96074 1.02220 1.02674 1.21458 0.94210 0.82210 1.02922 1.46630 1.70113 1.13282 1.03024 1.21447 0.96491 0.97925 0.84902 1.22232 0.97139 1.02206 1.01613 1.18006 0.91095 0.91243 0.85820 1.20618 1.10042 0.94087 0.98561 1.20978 0.92329 0.99276 0.90305 1.19662 1.11440 0.95664 0.93382 1.18201 0.77211 0.85911 0.83717 1.90755 1.46771 1.17728 1.87794 1.45819 1.68055 1.17893 1.05377 1.22082 1.02432 0.96050 0.82825 1.22401 0.83759 0.98091 0.92864 0.87761 1.86567 1.15434 1.37557 1.96247 1.21203 0.98590 0.93267 0.87110 1.42246 1.83513 1.10515 1.00792 1.19278 1.39289 0.95692 0.83099 0.91131 1.24760 1.02374 0.95807 0.97988 1.69687 1.53817 1.03745 1.30609 0.86107 0.77277 0.77691 0.85046 1.20541 1.21844 1.21841 1.21089 0.93325 0.92987 0.97839 1.20595 1.10536 1.01106 0.90742 0.92000 0.92560 0.91593 0.90763 0.90302 0.90764 0.90381 0.92037 0.92506 0.91667 0.85550 0.84887 0.76098 0.90428 0.91077 0.77974 0.95330 0.95881 0.77746 0.93547 0.85553 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.24 37.16 0.38 -0.43 16 2 C 0.11 0.56 5.86 -4.04 -0.02 0.53 16 3 N -0.62 -3.93 2.59 -171.76 -0.44 -4.37 16 4 C 0.12 0.54 5.86 -4.04 -0.02 0.52 16 5 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 6 C 0.24 2.05 6.55 -83.86 -0.55 1.50 16 7 C -0.21 -1.88 9.18 -39.45 -0.36 -2.25 16 8 C -0.01 -0.10 9.58 -39.23 -0.38 -0.48 16 9 C -0.20 -2.33 5.88 -104.94 -0.62 -2.94 16 10 C 0.56 8.00 7.76 -12.48 -0.10 7.90 16 11 O -0.55 -9.70 16.34 5.28 0.09 -9.61 16 12 N -0.72 -9.24 5.40 -61.35 -0.33 -9.57 16 13 C 0.09 1.26 5.34 -4.04 -0.02 1.24 16 14 C 0.09 1.39 3.08 -26.74 -0.08 1.31 16 15 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 16 O -0.55 -8.81 13.03 -35.23 -0.46 -9.27 16 17 C 0.13 2.50 5.90 -4.05 -0.02 2.47 16 18 N -0.73 -18.53 5.55 -59.91 -0.33 -18.87 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 C -0.03 -0.32 9.53 -39.23 -0.37 -0.70 16 28 C -0.21 -1.80 9.18 -39.45 -0.36 -2.16 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 33 H 0.08 0.38 6.17 -51.93 -0.32 0.06 16 34 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 35 H 0.08 0.36 6.17 -51.93 -0.32 0.04 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.13 0.89 6.11 -52.49 -0.32 0.57 16 40 H 0.13 1.47 7.64 -52.48 -0.40 1.07 16 41 H 0.40 4.53 6.36 -40.82 -0.26 4.27 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.37 4.98 9.05 45.56 0.41 5.39 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.39 10.58 7.67 -40.82 -0.31 10.27 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.13 1.06 6.39 -52.49 -0.34 0.72 16 50 H 0.13 0.89 6.11 -52.49 -0.32 0.57 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -34.75 410.03 -9.21 -43.96 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -7.21 Total: 13.13 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.40 Total: -1.38 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.38 Total: -60.61 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.37 Total: -18.88 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.75 -9.21 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732663981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.466 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds