Wall clock time and date at job start Tue Mar 31 2020 19:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47032 * 2 1 4 4 C 1.46501 * 119.99964 * 270.00095 * 3 2 1 5 5 C 1.53001 * 109.46966 * 270.00250 * 4 3 2 6 6 C 1.39051 * 120.00188 * 90.00325 * 3 2 1 7 7 C 1.39219 * 119.93293 * 179.97438 * 6 3 2 8 8 C 1.37600 * 120.07086 * 179.97438 * 7 6 3 9 9 C 1.39796 * 119.93118 * 0.02562 * 8 7 6 10 10 C 1.47527 * 120.07115 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99746 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99754 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 16 16 O 1.42905 * 109.47264 * 299.99925 * 14 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 18 18 N 1.46499 * 109.47658 * 184.99947 * 17 14 13 19 19 C 1.36939 * 120.00451 * 180.02562 * 18 17 14 20 20 H 1.08002 * 119.99755 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99649 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47262 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46934 * 120.00041 * 23 21 19 26 26 H 1.48502 * 109.46980 * 239.99932 * 23 21 19 27 27 C 1.39802 * 119.86130 * 0.27821 * 9 8 7 28 28 C 1.37608 * 119.92552 * 359.42162 * 27 9 8 29 29 H 1.09005 * 109.47012 * 300.00333 * 1 2 3 30 30 H 1.09005 * 109.46991 * 59.99694 * 1 2 3 31 31 H 1.08998 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46470 * 239.99999 * 2 1 3 33 33 H 1.09000 * 109.46933 * 119.99818 * 2 1 3 34 34 H 1.08996 * 109.47306 * 30.00034 * 4 3 2 35 35 H 1.08997 * 109.47289 * 150.00282 * 4 3 2 36 36 H 1.09003 * 109.47271 * 299.99896 * 5 4 3 37 37 H 1.08997 * 109.47091 * 59.99910 * 5 4 3 38 38 H 1.09000 * 109.46953 * 180.02562 * 5 4 3 39 39 H 1.08002 * 119.96327 * 0.02562 * 7 6 3 40 40 H 1.08004 * 120.03892 * 179.97438 * 8 7 6 41 41 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 43 43 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 44 44 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 45 45 H 1.09001 * 109.47563 * 305.00337 * 17 14 13 46 46 H 1.09004 * 109.47313 * 64.99993 * 17 14 13 47 47 H 0.97002 * 119.99938 * 0.02562 * 18 17 14 48 48 H 0.96998 * 119.99824 * 179.97438 * 22 21 19 49 49 H 1.08002 * 120.03516 * 179.72533 * 27 9 8 50 50 H 1.08001 * 119.96135 * 180.29845 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 6 2.2502 2.0367 1.2042 7 6 2.7147 3.3491 1.2025 8 6 2.9446 4.0006 2.3925 9 6 2.7116 3.3432 3.6040 10 6 2.9565 4.0390 4.8816 11 8 3.3609 5.1857 4.8816 12 7 2.7319 3.4036 6.0488 13 6 2.9746 4.0948 7.3175 14 6 2.6430 3.1576 8.4804 15 1 3.2738 2.2705 8.4235 16 8 1.2694 2.7708 8.4038 17 6 2.8970 3.8791 9.8054 18 7 2.6945 2.9459 10.9164 19 6 2.8661 3.3702 12.2071 20 1 3.1503 4.3930 12.4059 21 6 2.6737 2.4860 13.2597 22 7 2.3269 1.2397 13.0173 23 14 2.9072 3.0651 15.0203 24 1 3.2935 4.4990 15.0228 25 1 1.6369 2.8939 15.7702 26 1 3.9761 2.2628 15.6677 27 6 2.2512 2.0232 3.6024 28 6 2.0174 1.3792 2.4090 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 4.3883 2.2154 -0.9508 37 1 3.8744 0.7621 -1.8408 38 1 3.8892 2.3455 -2.6542 39 1 2.8941 3.8566 0.2662 40 1 3.3053 5.0186 2.3906 41 1 2.4090 2.4890 6.0488 42 1 4.0222 4.3902 7.3758 43 1 2.3433 4.9816 7.3747 44 1 0.6492 3.5113 8.4485 45 1 3.9211 4.2516 9.8259 46 1 2.2043 4.7152 9.9025 47 1 2.4389 2.0274 10.7378 48 1 2.1928 0.6218 13.7529 49 1 2.0745 1.5111 4.5367 50 1 1.6571 0.3610 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732663981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:51 Heat of formation + Delta-G solvation = -71.278978 kcal Electronic energy + Delta-G solvation = -27945.645663 eV Core-core repulsion = 23971.934135 eV Total energy + Delta-G solvation = -3973.711528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29502 -40.23137 -38.92185 -37.47958 -36.08914 -35.31611 -33.46515 -33.21719 -32.23574 -31.58210 -30.53729 -28.96923 -27.03793 -25.01563 -24.98300 -24.03528 -22.92825 -22.67677 -22.06048 -20.78250 -19.42521 -19.10274 -18.00191 -17.69710 -17.18323 -17.00873 -16.49744 -16.41391 -15.98107 -15.82545 -15.55024 -15.40768 -15.08693 -14.88752 -14.76367 -14.55857 -14.27652 -14.18928 -13.99216 -13.84880 -13.61354 -13.39908 -13.18458 -13.13229 -12.95385 -12.78164 -12.75584 -12.67851 -12.13365 -12.10819 -11.95800 -11.86711 -11.80927 -11.54557 -11.19308 -10.99485 -10.85836 -10.81946 -10.13131 -9.96839 -9.01059 -8.28055 -7.95020 -5.24477 0.08517 0.49914 1.48036 1.48834 1.59071 1.94303 2.10888 2.16302 2.56585 2.99600 3.36439 3.48922 3.59069 3.79186 3.85912 3.92572 4.03292 4.06812 4.19966 4.21764 4.24940 4.39466 4.40161 4.47498 4.50105 4.53285 4.54472 4.62578 4.68854 4.72460 4.86619 4.91413 4.94252 4.98671 5.00504 5.11933 5.21551 5.25865 5.30504 5.37220 5.37807 5.39763 5.48738 5.53037 5.78265 6.26380 6.32049 6.47929 6.56508 6.79779 7.24452 7.33454 8.08341 8.31937 9.28440 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.001740 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.022527 B =16090.032733 C =16925.568451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.168 4.168 6 C 0.246 3.754 7 C -0.213 4.213 8 C -0.019 4.019 9 C -0.223 4.223 10 C 0.559 3.441 11 O -0.593 6.593 12 N -0.711 5.711 13 C 0.102 3.898 14 C 0.109 3.891 15 H 0.101 0.899 16 O -0.562 6.562 17 C 0.123 3.877 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.266 1.266 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.031 4.031 28 C -0.212 4.212 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.412 0.588 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.385 0.615 45 H 0.034 0.966 46 H 0.031 0.969 47 H 0.377 0.623 48 H 0.251 0.749 49 H 0.138 0.862 50 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.191 -2.103 -35.676 35.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.012 4.012 3 N -0.324 5.324 4 C -0.013 4.013 5 C -0.227 4.227 6 C 0.140 3.860 7 C -0.235 4.235 8 C -0.039 4.039 9 C -0.228 4.228 10 C 0.350 3.650 11 O -0.475 6.475 12 N -0.363 5.363 13 C -0.023 4.023 14 C 0.049 3.951 15 H 0.119 0.881 16 O -0.368 6.368 17 C -0.005 4.005 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.618 5.618 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.050 4.050 28 C -0.234 4.234 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.141 0.859 41 H 0.250 0.750 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.234 0.766 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.209 0.791 48 H 0.060 0.940 49 H 0.156 0.844 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.648 -1.871 -35.778 35.865 hybrid contribution -0.243 0.164 1.353 1.384 sum -1.891 -1.707 -34.425 34.519 Atomic orbital electron populations 1.22184 0.95799 1.02802 1.01916 1.21632 0.94345 0.81374 1.03897 1.46889 1.68870 1.13845 1.02846 1.21626 0.97090 0.98041 0.84504 1.22179 0.96450 1.02297 1.01733 1.18151 0.89985 0.91107 0.86751 1.20745 1.09817 0.94450 0.98471 1.21001 0.92880 0.99113 0.90930 1.19550 1.14177 0.96720 0.92341 1.18598 0.76317 0.85478 0.84606 1.90722 1.48934 1.19528 1.88366 1.45700 1.67674 1.18175 1.04728 1.21848 1.02237 0.95554 0.82614 1.22078 0.83824 0.97680 0.91489 0.88139 1.86546 1.15616 1.38542 1.96126 1.21401 0.98832 0.92863 0.87378 1.42418 1.83494 1.10848 1.01467 1.19694 1.37932 0.95875 0.84507 0.90561 1.25598 1.03059 0.96041 1.02093 1.69840 1.55582 1.04906 1.31501 0.85051 0.76780 0.77806 0.79959 1.19041 1.21987 1.21963 1.21207 0.92719 0.92173 0.98935 1.20812 1.10280 1.01899 0.90394 0.93529 0.92488 0.90393 0.89012 0.90165 0.88966 0.90304 0.93651 0.92452 0.90327 0.83907 0.85894 0.75042 0.90746 0.90941 0.76600 0.94858 0.95081 0.79113 0.93977 0.84395 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 71.98 0.74 -0.45 16 2 C 0.11 0.77 5.86 86.38 0.51 1.28 16 3 N -0.62 -6.42 2.59 -697.32 -1.81 -8.23 16 4 C 0.11 0.76 5.86 86.38 0.51 1.27 16 5 C -0.17 -1.15 10.24 71.98 0.74 -0.41 16 6 C 0.25 3.80 6.55 38.47 0.25 4.05 16 7 C -0.21 -3.63 9.18 22.35 0.21 -3.43 16 8 C -0.02 -0.43 9.58 22.50 0.22 -0.21 16 9 C -0.22 -5.31 5.88 -20.07 -0.12 -5.43 16 10 C 0.56 16.20 7.76 86.69 0.67 16.87 16 11 O -0.59 -21.49 16.34 -4.01 -0.07 -21.56 16 12 N -0.71 -18.04 5.40 -466.27 -2.52 -20.56 16 13 C 0.10 2.79 5.34 86.38 0.46 3.26 16 14 C 0.11 3.36 3.08 30.59 0.09 3.46 16 15 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 16 O -0.56 -17.41 13.03 -148.98 -1.94 -19.35 16 17 C 0.12 4.75 5.90 86.38 0.51 5.26 16 18 N -0.74 -37.76 5.55 -343.46 -1.91 -39.67 16 19 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 23 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 27 C -0.03 -0.58 9.53 22.50 0.21 -0.36 16 28 C -0.21 -3.35 9.18 22.36 0.21 -3.15 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.09 0.37 8.07 -2.39 -0.02 0.35 16 33 H 0.08 0.57 6.17 -2.39 -0.01 0.55 16 34 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 35 H 0.08 0.56 6.17 -2.39 -0.01 0.55 16 36 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.14 1.86 6.11 -2.91 -0.02 1.84 16 40 H 0.12 2.88 7.64 -2.91 -0.02 2.86 16 41 H 0.41 8.94 6.36 -92.71 -0.59 8.35 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.39 9.86 9.05 -74.06 -0.67 9.19 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.38 20.75 7.67 -92.71 -0.71 20.04 16 48 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 49 H 0.14 2.15 6.39 -2.91 -0.02 2.13 16 50 H 0.15 1.71 6.11 -2.91 -0.02 1.70 16 Total: -1.00 -74.54 410.03 -0.42 -74.96 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -1.00 Total: 40.62 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.51 Total: 4.89 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.95 Total: -128.16 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -2.01 Total: -40.90 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -74.54 -0.42 -74.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732663981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.684 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds