Wall clock time and date at job start Tue Mar 31 2020 18:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 N 1.46898 * 109.47206 * 184.99822 * 4 2 1 6 6 C 1.46898 * 110.99995 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.47178 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99402 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00138 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00204 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00246 * 179.97438 * 10 9 7 13 13 N 1.31415 * 119.99988 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99978 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47102 * 89.99453 * 14 12 10 16 16 H 1.48495 * 109.47310 * 209.99604 * 14 12 10 17 17 H 1.48507 * 109.47322 * 329.99919 * 14 12 10 18 18 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 19 19 C 1.34777 * 119.99525 * 274.99614 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 H 1.08994 * 109.46223 * 60.30748 * 21 19 18 23 23 C 1.53038 * 109.45712 * 300.35585 * 21 19 18 24 24 C 1.53402 * 109.54621 * 239.97737 * 23 21 19 25 25 H 1.09007 * 111.32505 * 177.41720 * 24 23 21 26 26 C 1.52152 * 107.84711 * 55.70743 * 24 23 21 27 27 C 1.33095 * 113.75909 * 301.71802 * 26 24 23 28 28 C 1.52149 * 113.75605 * 359.97438 * 27 26 24 29 29 H 1.09003 * 111.34362 * 179.97438 * 28 27 26 30 30 C 1.53488 * 107.68571 * 301.59342 * 28 27 26 31 31 C 1.53024 * 109.53835 * 55.81496 * 30 28 27 32 32 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 34 34 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 35 35 H 1.08997 * 109.46872 * 304.99946 * 4 2 1 36 36 H 1.08994 * 109.47319 * 64.99922 * 4 2 1 37 37 H 1.00901 * 111.00043 * 56.04169 * 5 4 2 38 38 H 1.09002 * 109.47134 * 300.00065 * 6 5 4 39 39 H 1.08996 * 109.47008 * 60.00256 * 6 5 4 40 40 H 0.97002 * 119.99759 * 359.97438 * 9 7 6 41 41 H 0.96996 * 119.99662 * 180.02562 * 13 12 10 42 42 H 0.97000 * 120.00580 * 95.00360 * 18 2 1 43 43 H 1.08995 * 109.45970 * 359.97438 * 23 21 19 44 44 H 1.09000 * 109.45638 * 119.95992 * 23 21 19 45 45 H 1.08002 * 123.12415 * 121.72161 * 26 24 23 46 46 H 1.07998 * 123.12440 * 180.02562 * 27 26 24 47 47 H 1.09001 * 109.46688 * 175.83729 * 30 28 27 48 48 H 1.09003 * 109.45742 * 295.80777 * 30 28 27 49 49 H 1.09003 * 109.45551 * 120.02908 * 31 30 28 50 50 H 1.09005 * 109.45897 * 239.99294 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5040 -0.8265 -1.1906 6 6 4.0302 -1.5155 -2.3765 7 6 5.5316 -1.6051 -2.2805 8 8 6.1065 -1.1402 -1.3191 9 7 6.2352 -2.2018 -3.2630 10 6 7.6010 -2.2828 -3.1760 11 1 8.1131 -1.8688 -2.3199 12 6 8.3264 -2.8984 -4.1886 13 7 9.6356 -2.9765 -4.1050 14 14 7.4408 -3.6150 -5.6690 15 1 7.3216 -2.5774 -6.7246 16 1 8.2111 -4.7704 -6.1952 17 1 6.0854 -4.0670 -5.2640 18 7 2.0184 -0.6908 1.1960 19 6 2.1472 -0.0185 2.3570 20 8 1.8583 1.1582 2.4118 21 6 2.6437 -0.7305 3.5889 22 1 3.6438 -1.1221 3.4037 23 6 1.6984 -1.8861 3.9256 24 6 1.1107 -1.6767 5.3270 25 1 0.3970 -2.4612 5.5788 26 6 0.4418 -0.3103 5.3527 27 6 1.2639 0.6947 5.0599 28 6 2.6900 0.2540 4.7651 29 1 3.3280 1.1061 4.5304 30 6 3.2120 -0.4930 6.0001 31 6 2.2668 -1.6484 6.3368 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.6054 -1.7196 -1.2954 36 1 1.7517 -0.1581 -2.1370 37 1 3.7996 -1.2882 -0.3436 38 1 3.6094 -2.5196 -2.4299 39 1 3.7557 -0.9584 -3.2721 40 1 5.7753 -2.5739 -4.0317 41 1 10.1420 -3.4059 -4.8121 42 1 2.2492 -1.6319 1.1524 43 1 0.8906 -1.9191 3.1946 44 1 2.2502 -2.8257 3.9000 45 1 -0.6030 -0.1689 5.5869 46 1 0.9482 1.7272 5.0348 47 1 4.2071 -0.8865 5.7930 48 1 3.2617 0.1934 6.8455 49 1 2.8135 -2.5902 6.2894 50 1 1.8680 -1.5103 7.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732955495.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:52 Heat of formation + Delta-G solvation = -85.828015 kcal Electronic energy + Delta-G solvation = -29230.781914 eV Core-core repulsion = 25256.439493 eV Total energy + Delta-G solvation = -3974.342422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05489 -40.37552 -39.87142 -37.76265 -36.06354 -35.11285 -33.74301 -33.04123 -31.93467 -31.66343 -31.04074 -29.10550 -26.64239 -24.93400 -24.38007 -23.25074 -22.39982 -21.98442 -21.29470 -21.23445 -20.27309 -18.54937 -17.83345 -17.75178 -17.30980 -17.06860 -16.93134 -16.55401 -16.16645 -15.85645 -15.61247 -15.56923 -15.04299 -14.91535 -14.48412 -14.26312 -14.17878 -13.96442 -13.84209 -13.36953 -13.21108 -13.13601 -13.11771 -13.08184 -13.05522 -12.93716 -12.80961 -12.60296 -12.40670 -12.34077 -11.98763 -11.92558 -11.54648 -11.51220 -11.07969 -10.77879 -10.55822 -10.45282 -10.24843 -10.05113 -9.83855 -9.32130 -8.41077 -6.02291 1.30450 1.35698 1.36799 1.45474 1.72970 1.96029 2.22950 2.23733 2.71318 3.15360 3.37624 3.54107 3.61552 3.71731 3.86802 4.07810 4.13653 4.15524 4.21530 4.24443 4.35284 4.36847 4.41465 4.44837 4.51128 4.56196 4.57485 4.60561 4.67890 4.75637 4.77525 4.80690 5.04600 5.09296 5.11515 5.14144 5.19278 5.21802 5.27037 5.31824 5.36692 5.52627 5.58061 5.75659 5.89582 6.03196 6.05082 6.35957 6.58092 6.60003 6.88411 7.32629 7.40019 7.97051 8.76656 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.002318 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.145418 B =12076.011140 C =13061.422826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.061 0.939 4 C 0.058 3.942 5 N -0.692 5.692 6 C 0.062 3.938 7 C 0.446 3.554 8 O -0.616 6.616 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.259 1.259 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.716 5.716 19 C 0.519 3.481 20 O -0.575 6.575 21 C -0.103 4.103 22 H 0.106 0.894 23 C -0.101 4.101 24 C -0.057 4.057 25 H 0.101 0.899 26 C -0.175 4.175 27 C -0.148 4.148 28 C -0.045 4.045 29 H 0.061 0.939 30 C -0.113 4.113 31 C -0.110 4.110 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.343 0.657 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.407 0.593 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 -2.995 13.148 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.071 4.071 5 N -0.325 5.325 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.368 5.368 19 C 0.306 3.694 20 O -0.454 6.454 21 C -0.124 4.124 22 H 0.124 0.876 23 C -0.138 4.138 24 C -0.075 4.075 25 H 0.120 0.880 26 C -0.193 4.193 27 C -0.166 4.166 28 C -0.064 4.064 29 H 0.079 0.921 30 C -0.150 4.150 31 C -0.148 4.148 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.162 0.838 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.226 0.774 41 H 0.088 0.912 42 H 0.243 0.757 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.142 0.858 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.997 -1.290 13.471 28.425 hybrid contribution 0.429 -0.993 -0.708 1.293 sum -24.568 -2.283 12.763 27.779 Atomic orbital electron populations 1.22036 0.93321 1.03085 1.02394 1.20956 0.94614 0.96777 0.83612 0.92116 1.22348 0.85977 1.00687 0.98049 1.59971 1.10448 1.57802 1.04305 1.21654 0.89164 0.99941 0.96222 1.21064 0.90942 0.81243 0.83337 1.90554 1.73011 1.51614 1.34877 1.42021 1.06090 1.53717 1.21354 1.18996 0.81989 1.37379 1.07468 0.92863 1.26154 0.96207 0.97328 1.01833 1.69812 1.07564 1.44435 1.35786 0.85340 0.79792 0.78739 0.77475 1.18344 1.20090 1.15069 1.45972 1.67219 1.14286 1.09331 1.20981 0.76330 0.86827 0.85213 1.90653 1.51425 1.17756 1.85584 1.21568 1.01857 0.97190 0.91799 0.87638 1.21698 0.98105 0.96811 0.97212 1.20718 0.96838 0.95388 0.94540 0.88044 1.23964 0.98846 0.94872 1.01634 1.23637 0.95219 0.98290 0.99472 1.20440 0.95206 0.96638 0.94138 0.92069 1.21695 0.99380 0.97670 0.96282 1.21701 0.95705 0.98585 0.98797 0.90665 0.93951 0.90101 0.91907 0.88204 0.83759 0.89837 0.86668 0.77386 0.91156 0.75675 0.91227 0.88488 0.85764 0.88104 0.90976 0.91587 0.90106 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.15 2.98 2.88 44.99 0.13 3.11 16 3 H 0.06 1.71 7.58 -2.38 -0.02 1.69 16 4 C 0.06 1.05 5.30 86.31 0.46 1.51 16 5 N -0.69 -19.05 6.12 -517.93 -3.17 -22.21 16 6 C 0.06 1.75 6.17 85.56 0.53 2.28 16 7 C 0.45 19.63 7.82 87.66 0.69 20.32 16 8 O -0.62 -33.95 15.78 -3.06 -0.05 -34.00 16 9 N -0.59 -27.19 5.09 -306.99 -1.56 -28.76 16 10 C -0.33 -19.14 10.16 84.04 0.85 -18.29 16 11 H 0.05 3.72 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 13 N -0.94 -56.22 13.96 21.66 0.30 -55.92 16 14 Si 0.97 38.00 27.74 68.60 1.90 39.91 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 16 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 17 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 18 N -0.72 -14.40 4.08 -442.52 -1.81 -16.21 16 19 C 0.52 12.95 6.59 87.66 0.58 13.53 16 20 O -0.58 -19.04 14.64 -3.04 -0.04 -19.09 16 21 C -0.10 -2.00 2.52 -11.37 -0.03 -2.03 16 22 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 23 C -0.10 -1.36 5.17 30.74 0.16 -1.20 16 24 C -0.06 -0.73 3.58 -10.76 -0.04 -0.77 16 25 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 26 C -0.18 -3.01 9.81 25.00 0.25 -2.77 16 27 C -0.15 -3.22 8.26 25.00 0.21 -3.01 16 28 C -0.05 -0.96 2.68 -10.76 -0.03 -0.99 16 29 H 0.06 1.58 8.07 -2.39 -0.02 1.56 16 30 C -0.11 -1.82 5.67 30.77 0.17 -1.64 16 31 C -0.11 -1.37 5.68 30.78 0.17 -1.20 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.34 10.02 7.28 -89.69 -0.65 9.37 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.39 14.65 5.76 -92.71 -0.53 14.12 16 41 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.41 6.25 8.04 -92.71 -0.75 5.51 16 43 H 0.07 0.94 7.43 -2.39 -0.02 0.92 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.12 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.10 2.45 8.06 -2.91 -0.02 2.42 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -82.46 395.37 -0.22 -82.67 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -1.04 Total: 46.92 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.24 Total: 6.68 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.24 Total: -123.10 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.09 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.91 kcal Total: -82.46 -0.22 -82.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732955495.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.155 kcal (2) G-P(sol) polarization free energy of solvation -82.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds