Wall clock time and date at job start Tue Mar 31 2020 19:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47040 * 2 1 4 4 C 1.46498 * 120.00351 * 270.00195 * 3 2 1 5 5 C 1.50699 * 109.47183 * 270.00019 * 4 3 2 6 6 H 1.08003 * 119.99748 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00098 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99957 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47116 * 90.00369 * 9 7 5 11 11 H 1.48503 * 109.47223 * 210.00422 * 9 7 5 12 12 H 1.48501 * 109.47064 * 330.00399 * 9 7 5 13 13 C 1.34778 * 119.99975 * 90.00337 * 3 2 1 14 14 O 1.21282 * 120.00070 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00084 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47406 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00214 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47438 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.46862 * 295.00598 * 18 17 16 20 20 C 1.52997 * 109.47482 * 175.00032 * 18 17 16 21 21 N 1.46506 * 109.46999 * 54.99683 * 18 17 16 22 22 C 1.34777 * 120.00033 * 205.00067 * 21 18 17 23 23 O 1.21616 * 120.00076 * 0.02562 * 22 21 18 24 24 C 1.43195 * 119.99906 * 180.02562 * 22 21 18 25 25 C 9.38409 * 85.31364 * 40.52483 * 2 1 3 26 26 C 9.36089 * 104.04220 * 220.58773 * 3 1 2 27 27 C 1.53005 * 117.49800 * 239.49586 * 26 25 24 28 28 C 1.52993 * 59.99994 * 252.51451 * 27 26 25 29 29 H 1.08997 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46770 * 299.99736 * 1 2 3 31 31 H 1.08997 * 109.47082 * 59.99654 * 1 2 3 32 32 H 1.09002 * 109.46770 * 240.00264 * 2 1 3 33 33 H 1.08997 * 109.47082 * 120.00346 * 2 1 3 34 34 H 1.09001 * 109.46588 * 29.99878 * 4 3 2 35 35 H 1.08998 * 109.47335 * 150.00000 * 4 3 2 36 36 H 0.97001 * 120.00417 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47255 * 59.99993 * 15 13 3 38 38 H 1.09003 * 109.46881 * 300.00363 * 15 13 3 39 39 H 1.00901 * 110.99576 * 303.95602 * 16 15 13 40 40 H 1.09001 * 109.46987 * 59.99716 * 17 16 15 41 41 H 1.09002 * 109.46916 * 299.99918 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 20 18 17 43 43 H 1.09001 * 109.46832 * 299.99974 * 20 18 17 44 44 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 45 45 H 0.96992 * 120.00062 * 25.00521 * 21 18 17 46 46 H 1.08997 * 115.55383 * 25.20436 * 26 25 24 47 47 H 1.09006 * 117.49657 * 0.02562 * 27 26 25 48 48 H 1.09001 * 117.49865 * 145.01845 * 27 26 25 49 49 H 1.09001 * 117.49587 * 252.51176 * 28 27 26 50 50 H 1.08997 * 117.50129 * 107.49492 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1260 -3.6180 9 14 5.9131 2.0958 -3.4176 10 1 5.9759 0.8747 -4.2603 11 1 6.3923 3.2629 -4.2007 12 1 6.7734 1.9159 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2064 3.5889 17 6 2.0759 1.5462 4.8803 18 6 2.4164 2.5127 6.0162 19 1 3.4829 2.7366 5.9953 20 6 2.0562 1.8707 7.3575 21 7 1.6539 3.7523 5.8477 22 6 2.1143 4.9037 6.3758 23 8 3.1629 4.9138 6.9917 24 6 1.3688 6.1152 6.2115 25 6 0.7634 7.1092 6.0772 26 6 -0.0019 8.3552 5.9083 27 6 -1.0265 8.7070 6.9889 28 6 -1.4981 8.2308 5.6136 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 3.6751 3.5165 -4.4439 37 1 2.6213 0.4186 2.5303 38 1 0.9433 1.0125 2.5299 39 1 3.2575 2.5445 3.5221 40 1 2.7069 0.6605 4.9547 41 1 1.0285 1.2533 4.9546 42 1 2.6235 0.9484 7.4828 43 1 0.9896 1.6469 7.3783 44 1 2.2993 2.5592 8.1668 45 1 0.8178 3.7444 5.3562 46 1 0.5369 9.1779 5.4384 47 1 -1.1334 8.0159 7.8251 48 1 -1.1616 9.7613 7.2302 49 1 -1.9436 8.9719 4.9499 50 1 -1.9157 7.2264 5.5446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732994000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:33 Heat of formation + Delta-G solvation = 5.382204 kcal Electronic energy + Delta-G solvation = -28108.470983 eV Core-core repulsion = 24138.083733 eV Total energy + Delta-G solvation = -3970.387250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.93003 -39.11010 -37.92314 -36.90835 -35.29808 -34.26246 -33.03997 -32.76148 -31.00971 -30.10408 -28.34355 -26.56148 -25.29204 -24.13648 -23.02450 -22.82169 -22.51371 -22.10193 -20.98792 -19.02818 -18.34815 -16.92973 -16.89669 -16.54418 -16.25349 -15.74742 -15.51181 -15.39223 -15.05165 -14.49978 -14.45037 -14.31329 -13.86171 -13.64629 -13.35224 -13.11560 -12.90951 -12.75545 -12.51819 -12.31284 -12.26828 -12.13100 -11.95892 -11.95234 -11.83404 -11.55216 -11.46890 -11.18807 -11.11634 -10.91179 -10.75874 -10.53287 -10.47343 -10.34006 -10.13096 -9.95922 -9.63492 -9.23204 -8.93098 -8.43699 -8.40826 -7.65395 -6.04419 -4.09153 1.44024 2.03319 2.92579 3.29377 3.31554 3.36295 3.39202 3.45536 3.65914 3.69551 3.93033 4.26987 4.39360 4.45447 4.55750 4.58405 4.71492 4.89842 5.06950 5.09323 5.19570 5.22850 5.23364 5.28154 5.30462 5.38359 5.42337 5.45564 5.46565 5.49942 5.62735 5.63486 5.66328 5.77917 5.78642 5.92407 6.00155 6.21202 6.29862 6.45699 6.78178 7.07626 7.10840 7.31206 7.37279 7.46062 7.55898 7.92280 8.04933 8.23733 8.43760 8.90623 9.12113 9.56066 11.03622 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.002430 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.022265 B =11522.219525 C =12565.868716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.041 3.959 16 N -0.672 5.672 17 C 0.049 3.951 18 C 0.145 3.855 19 H 0.091 0.909 20 C -0.162 4.162 21 N -0.695 5.695 22 C 0.637 3.363 23 O -0.531 6.531 24 C -0.213 4.213 25 C -0.054 4.054 26 C -0.065 4.065 27 C -0.161 4.161 28 C -0.159 4.159 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.354 0.646 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.409 0.591 46 H 0.137 0.863 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.109 0.891 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.796 -1.099 20.746 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.091 4.091 16 N -0.305 5.305 17 C -0.081 4.081 18 C 0.040 3.960 19 H 0.109 0.891 20 C -0.221 4.221 21 N -0.345 5.345 22 C 0.424 3.576 23 O -0.409 6.409 24 C -0.216 4.216 25 C -0.057 4.057 26 C -0.083 4.083 27 C -0.198 4.198 28 C -0.196 4.196 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.174 0.826 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.244 0.756 46 H 0.154 0.846 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.429 -0.103 20.968 23.880 hybrid contribution 1.355 -0.878 -0.781 1.793 sum -10.074 -0.981 20.187 22.582 Atomic orbital electron populations 1.22222 0.96819 1.01323 1.02359 1.21400 0.93493 0.84331 1.02539 1.48253 1.64055 1.13171 1.07719 1.19246 0.96165 0.93658 0.78103 1.21425 0.96955 1.31867 1.06194 0.92596 1.24935 0.97821 0.94926 0.96438 1.69928 1.35691 1.33411 1.14328 0.86509 0.84726 0.77671 0.78580 1.20666 1.21064 1.19944 1.20169 0.78989 0.87110 0.84880 1.90691 1.45025 1.17703 1.86900 1.21909 1.02265 0.94333 0.90583 1.60114 1.33181 1.37372 0.99855 1.22313 1.02067 0.95026 0.88677 1.21020 0.97506 0.83282 0.94168 0.89098 1.22154 1.01965 1.01124 0.96848 1.45657 1.26582 1.06939 1.55339 1.14612 0.83373 0.80662 0.78967 1.90843 1.22567 1.85893 1.41617 1.20532 1.00174 0.96059 1.04862 1.21226 0.95612 0.93677 0.95137 1.18912 0.90454 0.92590 1.06317 1.23099 1.00856 1.02959 0.92901 1.23113 0.93629 1.03844 0.98976 0.92249 0.93074 0.92017 0.90005 0.91955 0.95094 0.93914 0.92721 0.92877 0.88777 0.82571 0.93401 0.90236 0.91298 0.92173 0.91675 0.75585 0.84578 0.88222 0.87420 0.87292 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.44 5.16 -5.20 -0.03 6.41 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.50 10.18 7.71 -10.98 -0.08 10.09 16 14 O -0.53 -13.23 15.78 5.56 0.09 -13.14 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.55 16 16 N -0.67 -8.91 5.85 -115.06 -0.67 -9.58 16 17 C 0.05 0.45 5.24 -3.83 -0.02 0.43 16 18 C 0.15 1.45 2.81 -67.93 -0.19 1.26 16 19 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 20 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 21 N -0.69 -7.85 4.79 -56.25 -0.27 -8.12 16 22 C 0.64 9.06 7.61 -14.34 -0.11 8.95 16 23 O -0.53 -9.18 16.75 5.26 0.09 -9.10 16 24 C -0.21 -2.89 13.60 -38.87 -0.53 -3.42 16 25 C -0.05 -0.64 13.46 -37.15 -0.50 -1.14 16 26 C -0.07 -0.54 6.22 -93.41 -0.58 -1.12 16 27 C -0.16 -0.99 10.21 -26.73 -0.27 -1.26 16 28 C -0.16 -1.03 10.21 -26.74 -0.27 -1.30 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 38 H 0.09 1.11 7.18 -51.93 -0.37 0.74 16 39 H 0.35 5.36 8.43 -39.29 -0.33 5.03 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.41 4.14 8.57 -40.82 -0.35 3.79 16 46 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 427.44 15.07 6.44 6.44 Total: -1.00 -36.02 427.44 -9.75 -45.76 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.38 Total: 4.70 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.32 Total: 4.79 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.64 Total: -56.42 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.18 Total: -22.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -36.02 -9.75 -45.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732994000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.147 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds