Wall clock time and date at job start Tue Mar 31 2020 19:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47040 * 2 1 4 4 C 1.46498 * 120.00351 * 270.00195 * 3 2 1 5 5 C 1.50699 * 109.47183 * 270.00019 * 4 3 2 6 6 H 1.08003 * 119.99748 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00098 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99957 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47116 * 90.00369 * 9 7 5 11 11 H 1.48503 * 109.47223 * 210.00422 * 9 7 5 12 12 H 1.48501 * 109.47064 * 330.00399 * 9 7 5 13 13 C 1.34778 * 119.99975 * 90.00337 * 3 2 1 14 14 O 1.21282 * 120.00070 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00084 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.47406 * 180.02562 * 15 13 3 17 17 C 1.46897 * 111.00214 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47438 * 180.02562 * 17 16 15 19 19 H 1.08998 * 109.46862 * 295.00598 * 18 17 16 20 20 C 1.52997 * 109.47482 * 175.00032 * 18 17 16 21 21 N 1.46506 * 109.46999 * 54.99683 * 18 17 16 22 22 C 1.34777 * 120.00033 * 205.00067 * 21 18 17 23 23 O 1.21616 * 120.00076 * 0.02562 * 22 21 18 24 24 C 1.43195 * 119.99906 * 180.02562 * 22 21 18 25 25 C 9.38409 * 85.31364 * 40.52483 * 2 1 3 26 26 C 9.36089 * 104.04220 * 220.58773 * 3 1 2 27 27 C 1.53005 * 117.49800 * 239.49586 * 26 25 24 28 28 C 1.52993 * 59.99994 * 252.51451 * 27 26 25 29 29 H 1.08997 * 109.47061 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46770 * 299.99736 * 1 2 3 31 31 H 1.08997 * 109.47082 * 59.99654 * 1 2 3 32 32 H 1.09002 * 109.46770 * 240.00264 * 2 1 3 33 33 H 1.08997 * 109.47082 * 120.00346 * 2 1 3 34 34 H 1.09001 * 109.46588 * 29.99878 * 4 3 2 35 35 H 1.08998 * 109.47335 * 150.00000 * 4 3 2 36 36 H 0.97001 * 120.00417 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.47255 * 59.99993 * 15 13 3 38 38 H 1.09003 * 109.46881 * 300.00363 * 15 13 3 39 39 H 1.00901 * 110.99576 * 303.95602 * 16 15 13 40 40 H 1.09001 * 109.46987 * 59.99716 * 17 16 15 41 41 H 1.09002 * 109.46916 * 299.99918 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 20 18 17 43 43 H 1.09001 * 109.46832 * 299.99974 * 20 18 17 44 44 H 1.09004 * 109.47261 * 179.97438 * 20 18 17 45 45 H 0.96992 * 120.00062 * 25.00521 * 21 18 17 46 46 H 1.08997 * 115.55383 * 25.20436 * 26 25 24 47 47 H 1.09006 * 117.49657 * 0.02562 * 27 26 25 48 48 H 1.09001 * 117.49865 * 145.01845 * 27 26 25 49 49 H 1.09001 * 117.49587 * 252.51176 * 28 27 26 50 50 H 1.08997 * 117.50129 * 107.49492 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1260 -3.6180 9 14 5.9131 2.0958 -3.4176 10 1 5.9759 0.8747 -4.2603 11 1 6.3923 3.2629 -4.2007 12 1 6.7734 1.9159 -2.2206 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1602 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2064 3.5889 17 6 2.0759 1.5462 4.8803 18 6 2.4164 2.5127 6.0162 19 1 3.4829 2.7366 5.9953 20 6 2.0562 1.8707 7.3575 21 7 1.6539 3.7523 5.8477 22 6 2.1143 4.9037 6.3758 23 8 3.1629 4.9138 6.9917 24 6 1.3688 6.1152 6.2115 25 6 0.7634 7.1092 6.0772 26 6 -0.0019 8.3552 5.9083 27 6 -1.0265 8.7070 6.9889 28 6 -1.4981 8.2308 5.6136 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1383 36 1 3.6751 3.5165 -4.4439 37 1 2.6213 0.4186 2.5303 38 1 0.9433 1.0125 2.5299 39 1 3.2575 2.5445 3.5221 40 1 2.7069 0.6605 4.9547 41 1 1.0285 1.2533 4.9546 42 1 2.6235 0.9484 7.4828 43 1 0.9896 1.6469 7.3783 44 1 2.2993 2.5592 8.1668 45 1 0.8178 3.7444 5.3562 46 1 0.5369 9.1779 5.4384 47 1 -1.1334 8.0159 7.8251 48 1 -1.1616 9.7613 7.2302 49 1 -1.9436 8.9719 4.9499 50 1 -1.9157 7.2264 5.5446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732994000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:32 Heat of formation + Delta-G solvation = -20.287673 kcal Electronic energy + Delta-G solvation = -28109.584113 eV Core-core repulsion = 24138.083733 eV Total energy + Delta-G solvation = -3971.500379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99007 -40.63991 -38.53444 -37.92400 -36.89907 -35.40021 -34.84256 -33.95199 -31.94742 -31.55838 -29.78362 -28.04673 -26.20441 -25.39407 -24.46844 -23.63867 -23.30574 -23.25572 -21.87839 -20.09818 -19.72396 -18.62781 -18.03967 -17.74811 -17.52766 -17.19447 -16.71745 -16.43211 -16.23890 -15.87449 -15.52067 -15.35023 -15.01826 -14.94931 -14.63430 -14.29987 -14.24034 -13.61420 -13.54118 -13.51467 -13.27798 -13.18875 -13.06679 -13.06062 -12.89192 -12.79669 -12.65709 -12.46883 -12.43338 -12.31700 -12.15090 -11.91259 -11.83080 -11.72248 -11.52034 -11.13649 -10.73894 -10.65387 -10.56156 -10.16562 -9.42958 -9.37990 -8.23338 -6.38223 0.43568 1.12067 1.34117 1.37556 1.47417 1.89447 2.01237 2.25871 2.37499 2.41353 3.00137 3.05799 3.08968 3.23398 3.73168 3.78314 3.80873 4.02206 4.04569 4.11211 4.17864 4.29296 4.40097 4.42039 4.47919 4.50701 4.62746 4.68778 4.74068 4.74798 4.76022 4.94585 4.95589 5.01847 5.02165 5.06720 5.07216 5.19935 5.22356 5.27129 5.41006 5.42152 5.57928 5.84079 5.95245 6.06544 6.12709 6.21422 6.39879 6.70505 6.85915 7.04416 7.28433 7.55174 8.83560 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.002430 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.022265 B =11522.219525 C =12565.868716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.491 3.509 14 O -0.590 6.590 15 C 0.060 3.940 16 N -0.691 5.691 17 C 0.057 3.943 18 C 0.141 3.859 19 H 0.066 0.934 20 C -0.153 4.153 21 N -0.682 5.682 22 C 0.632 3.368 23 O -0.575 6.575 24 C -0.266 4.266 25 C -0.033 4.033 26 C -0.096 4.096 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.339 0.661 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.415 0.585 46 H 0.150 0.850 47 H 0.097 0.903 48 H 0.132 0.868 49 H 0.128 0.872 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 -3.210 21.962 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.279 3.721 14 O -0.470 6.470 15 C -0.071 4.071 16 N -0.323 5.323 17 C -0.071 4.071 18 C 0.037 3.963 19 H 0.085 0.915 20 C -0.212 4.212 21 N -0.331 5.331 22 C 0.420 3.580 23 O -0.457 6.457 24 C -0.268 4.268 25 C -0.036 4.036 26 C -0.114 4.114 27 C -0.181 4.181 28 C -0.188 4.188 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.252 0.748 46 H 0.167 0.833 47 H 0.115 0.885 48 H 0.150 0.850 49 H 0.146 0.854 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.732 -2.302 22.190 25.687 hybrid contribution 1.650 -0.177 -1.164 2.028 sum -11.082 -2.479 21.026 23.896 Atomic orbital electron populations 1.22152 0.94539 1.03468 1.01688 1.21754 0.95335 0.81254 1.03916 1.48285 1.64142 1.15129 1.06136 1.18645 0.95132 0.91395 0.80658 1.21708 0.97937 1.31866 1.06399 0.92925 1.25868 1.02356 0.94525 0.96538 1.70052 1.37786 1.34245 1.14809 0.85429 0.79036 0.78230 0.78188 1.18634 1.20745 1.19893 1.21396 0.77320 0.86672 0.86681 1.90658 1.47699 1.20691 1.87945 1.21826 1.04640 0.93946 0.86723 1.60121 1.32317 1.38434 1.01384 1.22386 1.04057 0.94839 0.85867 1.21173 0.96119 0.82993 0.96031 0.91544 1.22078 1.03437 1.01145 0.94499 1.45673 1.26551 1.06754 1.54125 1.14817 0.82962 0.81584 0.78659 1.90798 1.24408 1.86611 1.43844 1.20719 1.01791 0.97084 1.07243 1.22069 0.94618 0.93731 0.93168 1.19285 0.91442 0.91546 1.09101 1.23230 0.98205 1.04323 0.92381 1.23240 0.91540 1.04315 0.99670 0.88591 0.91823 0.94659 0.91299 0.87880 0.96169 0.98928 0.92437 0.90064 0.85514 0.84280 0.91041 0.87625 0.89245 0.90333 0.93785 0.74825 0.83293 0.88461 0.85036 0.85380 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.05 2.46 -826.15 -2.03 -27.08 16 4 C 0.26 14.35 5.16 85.63 0.44 14.79 16 5 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.49 19.87 7.71 87.66 0.68 20.55 16 14 O -0.59 -30.95 15.78 -3.04 -0.05 -30.99 16 15 C 0.06 1.50 4.72 85.56 0.40 1.90 16 16 N -0.69 -17.26 5.85 -517.93 -3.03 -20.29 16 17 C 0.06 0.88 5.24 86.30 0.45 1.33 16 18 C 0.14 2.71 2.81 44.99 0.13 2.83 16 19 H 0.07 1.62 7.58 -2.39 -0.02 1.61 16 20 C -0.15 -2.19 9.48 71.98 0.68 -1.51 16 21 N -0.68 -15.63 4.79 -450.12 -2.16 -17.78 16 22 C 0.63 19.12 7.61 85.49 0.65 19.77 16 23 O -0.57 -21.31 16.75 -4.08 -0.07 -21.38 16 24 C -0.27 -7.61 13.60 30.04 0.41 -7.20 16 25 C -0.03 -0.81 13.46 31.15 0.42 -0.39 16 26 C -0.10 -1.52 6.22 -12.60 -0.08 -1.60 16 27 C -0.14 -1.50 10.21 30.59 0.31 -1.19 16 28 C -0.15 -1.70 10.21 30.59 0.31 -1.39 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.29 7.22 -2.39 -0.02 1.28 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 34 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 35 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.08 1.62 7.40 -2.39 -0.02 1.61 16 38 H 0.13 2.38 7.18 -2.39 -0.02 2.36 16 39 H 0.34 10.32 8.43 -89.69 -0.76 9.56 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.42 8.29 8.57 -92.71 -0.79 7.50 16 46 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -86.02 427.44 1.14 -84.88 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.60 Total: 23.93 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.76 Total: 17.93 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.93 Total: -121.92 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.12 Total: -52.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -86.02 1.14 -84.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732994000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.589 kcal (2) G-P(sol) polarization free energy of solvation -86.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds