Wall clock time and date at job start Tue Mar 31 2020 19:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46898 * 2 1 4 4 C 1.36932 * 120.00499 * 269.56921 * 3 2 1 5 5 H 1.07994 * 120.00802 * 188.73787 * 4 3 2 6 6 C 1.38811 * 119.99640 * 8.73750 * 4 3 2 7 7 N 1.31616 * 120.00398 * 17.52581 * 6 4 3 8 8 Si 1.86805 * 119.99914 * 197.52290 * 6 4 3 9 9 H 1.48500 * 109.47232 * 60.00399 * 8 6 4 10 10 H 1.48506 * 109.46878 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47228 * 299.99797 * 8 6 4 12 12 C 1.46505 * 119.99634 * 89.56911 * 3 2 1 13 13 C 1.52999 * 109.47018 * 89.09581 * 12 3 2 14 14 C 1.53073 * 109.44718 * 62.16324 * 13 12 3 15 15 C 1.53186 * 109.29858 * 181.23805 * 14 13 12 16 16 N 1.46925 * 108.89151 * 305.57684 * 15 14 13 17 17 C 1.34779 * 120.62995 * 233.51675 * 16 15 14 18 18 O 1.21614 * 120.00064 * 171.80662 * 17 16 15 19 19 C 1.47416 * 119.99781 * 351.80606 * 17 16 15 20 20 N 1.36064 * 126.45179 * 353.02010 * 19 17 16 21 21 C 1.29936 * 108.47903 * 179.85949 * 20 19 17 22 22 C 1.50697 * 125.38103 * 180.18799 * 21 20 19 23 23 O 1.34051 * 109.24149 * 0.41218 * 21 20 19 24 24 C 1.34258 * 108.22929 * 359.73830 * 23 21 20 25 25 C 1.50692 * 126.52737 * 179.97438 * 24 23 21 26 26 C 1.46925 * 118.74146 * 53.53715 * 16 15 14 27 27 C 1.53045 * 109.45980 * 182.36628 * 13 12 3 28 28 H 1.08998 * 109.46706 * 182.72863 * 1 2 3 29 29 H 1.08992 * 109.47521 * 302.73380 * 1 2 3 30 30 H 1.09003 * 109.47244 * 62.74009 * 1 2 3 31 31 H 1.08998 * 109.47652 * 240.00473 * 2 1 3 32 32 H 1.09000 * 109.47311 * 119.99458 * 2 1 3 33 33 H 0.97005 * 120.00727 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47654 * 329.09016 * 12 3 2 35 35 H 1.09007 * 109.46600 * 209.08924 * 12 3 2 36 36 H 1.08997 * 109.46203 * 302.33420 * 13 12 3 37 37 H 1.09001 * 109.38896 * 61.35384 * 14 13 12 38 38 H 1.09005 * 109.61824 * 301.25359 * 14 13 12 39 39 H 1.09000 * 109.58889 * 185.71400 * 15 14 13 40 40 H 1.09000 * 109.58968 * 65.43322 * 15 14 13 41 41 H 1.08996 * 109.47552 * 180.27865 * 22 21 20 42 42 H 1.09008 * 109.47052 * 300.27885 * 22 21 20 43 43 H 1.09000 * 109.46989 * 60.27629 * 22 21 20 44 44 H 1.08995 * 109.47601 * 270.04784 * 25 24 23 45 45 H 1.09004 * 109.46911 * 30.04560 * 25 24 23 46 46 H 1.08994 * 109.47012 * 150.04172 * 25 24 23 47 47 H 1.09000 * 109.58859 * 66.17938 * 26 16 15 48 48 H 1.08997 * 109.59048 * 186.46134 * 26 16 15 49 49 H 1.09006 * 109.49408 * 58.67446 * 27 13 12 50 50 H 1.08996 * 109.52009 * 298.59233 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2549 2.0239 -1.1858 5 1 2.7457 2.9859 -1.1902 6 6 1.8639 1.4388 -2.3823 7 7 0.9799 0.4637 -2.3802 8 14 2.5923 2.0355 -3.9957 9 1 4.0658 1.8522 -3.9714 10 1 2.0143 1.2544 -5.1186 11 1 2.2754 3.4746 -4.1796 12 6 2.2534 2.0750 1.2688 13 6 3.6884 1.8172 1.7327 14 6 4.6670 2.3865 0.7024 15 6 6.1021 2.0993 1.1548 16 7 6.2848 2.6199 2.5166 17 6 7.2980 3.4626 2.7994 18 8 7.3536 4.0031 3.8874 19 6 8.3387 3.7290 1.7899 20 7 8.4808 3.1024 0.5905 21 6 9.5086 3.6109 -0.0206 22 6 10.0069 3.1979 -1.3815 23 8 10.0586 4.5576 0.7529 24 6 9.3417 4.6439 1.8848 25 6 9.5992 5.5760 3.0406 26 6 5.3424 2.2042 3.5642 27 6 3.9157 2.4931 3.0869 28 1 -0.3633 -1.0265 0.0489 29 1 -0.3634 0.5556 0.8644 30 1 -0.3634 0.4707 -0.9135 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.7070 0.0545 -3.2163 34 1 1.5564 1.7042 2.0203 35 1 2.1030 3.1458 1.1306 36 1 3.8511 0.7439 1.8307 37 1 4.5200 3.4634 0.6201 38 1 4.4908 1.9196 -0.2667 39 1 6.8032 2.5893 0.4792 40 1 6.2792 1.0238 1.1480 41 1 10.8856 3.7881 -1.6412 42 1 10.2710 2.1404 -1.3662 43 1 9.2244 3.3662 -2.1214 44 1 10.2657 5.0932 3.7553 45 1 10.0626 6.4915 2.6728 46 1 8.6556 5.8176 3.5297 47 1 5.4549 1.1368 3.7544 48 1 5.5437 2.7615 4.4791 49 1 3.2028 2.1019 3.8128 50 1 3.7772 3.5694 2.9845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733920906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:22 Heat of formation + Delta-G solvation = 19.982782 kcal Electronic energy + Delta-G solvation = -30343.155914 eV Core-core repulsion = 26373.401793 eV Total energy + Delta-G solvation = -3969.754121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63603 -39.88710 -37.64549 -35.79687 -35.15272 -33.26790 -33.04647 -30.94117 -30.62874 -30.28504 -29.04076 -27.17526 -25.98606 -24.09778 -23.36594 -22.84455 -22.19581 -21.54413 -20.50288 -19.60510 -18.92566 -17.37843 -17.24382 -16.56147 -16.11730 -15.77415 -15.03433 -14.95602 -14.43574 -14.22139 -14.04241 -13.75086 -13.71138 -13.46036 -13.36790 -13.26129 -12.98719 -12.96668 -12.91647 -12.75534 -12.48871 -12.00465 -11.76751 -11.61206 -11.38747 -11.21004 -10.97188 -10.83445 -10.73921 -10.70879 -10.41066 -10.22001 -10.15266 -10.03534 -9.82157 -9.45801 -9.40149 -9.25268 -8.96444 -8.38418 -8.26823 -6.73803 -5.61770 -3.01952 0.94823 1.85021 2.27988 3.04934 3.25988 3.41226 3.47802 3.48143 3.71529 4.41297 4.53185 4.54179 4.82482 5.11549 5.13129 5.15782 5.17602 5.22298 5.24746 5.35745 5.41263 5.45840 5.59554 5.62733 5.66988 5.71556 5.80110 5.84180 5.90307 6.01967 6.20807 6.23133 6.32935 6.45960 6.57365 6.64566 6.70196 6.76643 6.82387 7.01108 7.10662 7.14086 7.18807 7.30492 7.35577 7.57991 7.72339 7.90162 8.17855 8.31563 8.45939 9.36029 9.96553 10.41509 11.36331 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003590 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.240164 B = 7798.395140 C = 9602.448484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.173 3.827 3 N -0.600 5.600 4 C -0.234 4.234 5 H 0.072 0.928 6 C -0.010 4.010 7 N -0.904 5.904 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.287 1.287 12 C 0.158 3.842 13 C -0.106 4.106 14 C -0.119 4.119 15 C 0.081 3.919 16 N -0.587 5.587 17 C 0.599 3.401 18 O -0.548 6.548 19 C -0.066 4.066 20 N -0.451 5.451 21 C 0.192 3.808 22 C -0.059 4.059 23 O -0.198 6.198 24 C 0.033 3.967 25 C -0.072 4.072 26 C 0.114 3.886 27 C -0.126 4.126 28 H 0.013 0.987 29 H 0.003 0.997 30 H 0.101 0.899 31 H 0.085 0.915 32 H -0.002 1.002 33 H 0.249 0.751 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.265 5.434 7.444 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 N -0.321 5.321 4 C -0.363 4.363 5 H 0.090 0.910 6 C -0.205 4.205 7 N -0.552 5.552 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.214 1.214 12 C 0.030 3.970 13 C -0.128 4.128 14 C -0.157 4.157 15 C -0.041 4.041 16 N -0.318 5.318 17 C 0.387 3.613 18 O -0.428 6.428 19 C -0.186 4.186 20 N -0.182 5.182 21 C -0.016 4.016 22 C -0.116 4.116 23 O -0.086 6.086 24 C -0.023 4.023 25 C -0.128 4.128 26 C -0.009 4.009 27 C -0.165 4.165 28 H 0.032 0.968 29 H 0.023 0.977 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.088 0.912 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.837 5.135 7.593 19.170 hybrid contribution 0.588 0.623 -0.710 1.113 sum 17.425 5.758 6.882 19.599 Atomic orbital electron populations 1.22549 0.99330 0.97427 1.01713 1.20733 0.92492 0.84419 0.97494 1.44145 1.76488 1.10948 1.00545 1.19252 1.30794 1.02542 0.83724 0.90991 1.24744 0.98761 0.99534 0.97489 1.70119 1.31674 1.28696 1.24697 0.86416 0.79090 0.77740 0.83934 1.21295 1.21823 1.21415 1.20712 0.91937 0.95980 0.88364 1.21823 0.98979 0.99197 0.92769 1.21959 0.91882 1.00703 1.01135 1.22710 0.99930 0.99581 0.81835 1.47964 1.26951 1.44995 1.11844 1.16766 0.80379 0.79099 0.85047 1.90737 1.77274 1.51077 1.23698 1.21498 1.00874 1.00690 0.95539 1.70715 1.16105 1.26054 1.05292 1.26437 0.90874 0.87799 0.96469 1.20338 1.02684 1.03165 0.85410 1.84318 1.49587 1.49324 1.25373 1.23661 0.91449 0.99331 0.87844 1.20531 1.05548 0.95829 0.90902 1.21657 0.88775 0.99689 0.90736 1.21928 0.94895 1.01338 0.98357 0.96778 0.97742 0.88086 0.89701 0.98396 0.94019 0.94784 0.94000 0.91970 0.93089 0.87991 0.85577 0.92156 0.89334 0.88184 0.87978 0.89109 0.90289 0.87181 0.91654 0.89510 0.91183 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.67 37.16 0.36 -3.23 16 2 C 0.17 4.18 5.64 -4.04 -0.02 4.16 16 3 N -0.60 -14.36 2.34 -173.24 -0.41 -14.77 16 4 C -0.23 -6.06 7.81 -15.06 -0.12 -6.18 16 5 H 0.07 1.84 7.52 -52.49 -0.39 1.45 16 6 C -0.01 -0.26 5.09 -17.43 -0.09 -0.35 16 7 N -0.90 -24.85 7.76 55.49 0.43 -24.42 16 8 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.16 3.18 5.20 -4.04 -0.02 3.16 16 13 C -0.11 -1.84 2.37 -90.56 -0.21 -2.06 16 14 C -0.12 -2.12 4.68 -26.60 -0.12 -2.25 16 15 C 0.08 1.30 6.07 -3.71 -0.02 1.28 16 16 N -0.59 -9.19 2.97 -174.04 -0.52 -9.70 16 17 C 0.60 9.61 7.66 -12.52 -0.10 9.52 16 18 O -0.55 -9.28 14.33 5.27 0.08 -9.21 16 19 C -0.07 -0.98 6.66 -83.02 -0.55 -1.53 16 20 N -0.45 -6.34 7.86 -7.66 -0.06 -6.40 16 21 C 0.19 2.17 8.30 -13.08 -0.11 2.07 16 22 C -0.06 -0.39 10.51 36.00 0.38 -0.01 16 23 O -0.20 -2.30 10.73 6.50 0.07 -2.23 16 24 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 25 C -0.07 -0.66 9.81 36.00 0.35 -0.31 16 26 C 0.11 1.62 6.44 -3.71 -0.02 1.59 16 27 C -0.13 -1.85 5.37 -26.61 -0.14 -2.00 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 2.71 5.81 -51.93 -0.30 2.41 16 31 H 0.08 2.26 6.02 -51.93 -0.31 1.95 16 32 H 0.00 -0.05 8.08 -51.93 -0.42 -0.47 16 33 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.03 0.66 8.08 -51.93 -0.42 0.25 16 35 H 0.04 0.86 8.03 -51.92 -0.42 0.45 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.10 2.11 6.23 -51.93 -0.32 1.78 16 39 H 0.13 2.05 4.19 -57.22 -0.24 1.81 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.11 1.15 6.64 -51.93 -0.34 0.81 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.09 1.23 7.00 -51.93 -0.36 0.86 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -30.27 387.38 -8.47 -38.74 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -8.17 Total: 1.94 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.71 Total: 4.02 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.55 Total: -55.30 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.15 Total: -11.44 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.27 -8.47 -38.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733920906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.723 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds