Wall clock time and date at job start Tue Mar 31 2020 19:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46898 * 2 1 4 4 C 1.36932 * 120.00499 * 269.56921 * 3 2 1 5 5 H 1.07994 * 120.00802 * 188.73787 * 4 3 2 6 6 C 1.38811 * 119.99640 * 8.73750 * 4 3 2 7 7 N 1.31616 * 120.00398 * 17.52581 * 6 4 3 8 8 Si 1.86805 * 119.99914 * 197.52290 * 6 4 3 9 9 H 1.48500 * 109.47232 * 60.00399 * 8 6 4 10 10 H 1.48506 * 109.46878 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47228 * 299.99797 * 8 6 4 12 12 C 1.46505 * 119.99634 * 89.56911 * 3 2 1 13 13 C 1.52999 * 109.47018 * 89.09581 * 12 3 2 14 14 C 1.53073 * 109.44718 * 62.16324 * 13 12 3 15 15 C 1.53186 * 109.29858 * 181.23805 * 14 13 12 16 16 N 1.46925 * 108.89151 * 305.57684 * 15 14 13 17 17 C 1.34779 * 120.62995 * 233.51675 * 16 15 14 18 18 O 1.21614 * 120.00064 * 171.80662 * 17 16 15 19 19 C 1.47416 * 119.99781 * 351.80606 * 17 16 15 20 20 N 1.36064 * 126.45179 * 353.02010 * 19 17 16 21 21 C 1.29936 * 108.47903 * 179.85949 * 20 19 17 22 22 C 1.50697 * 125.38103 * 180.18799 * 21 20 19 23 23 O 1.34051 * 109.24149 * 0.41218 * 21 20 19 24 24 C 1.34258 * 108.22929 * 359.73830 * 23 21 20 25 25 C 1.50692 * 126.52737 * 179.97438 * 24 23 21 26 26 C 1.46925 * 118.74146 * 53.53715 * 16 15 14 27 27 C 1.53045 * 109.45980 * 182.36628 * 13 12 3 28 28 H 1.08998 * 109.46706 * 182.72863 * 1 2 3 29 29 H 1.08992 * 109.47521 * 302.73380 * 1 2 3 30 30 H 1.09003 * 109.47244 * 62.74009 * 1 2 3 31 31 H 1.08998 * 109.47652 * 240.00473 * 2 1 3 32 32 H 1.09000 * 109.47311 * 119.99458 * 2 1 3 33 33 H 0.97005 * 120.00727 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47654 * 329.09016 * 12 3 2 35 35 H 1.09007 * 109.46600 * 209.08924 * 12 3 2 36 36 H 1.08997 * 109.46203 * 302.33420 * 13 12 3 37 37 H 1.09001 * 109.38896 * 61.35384 * 14 13 12 38 38 H 1.09005 * 109.61824 * 301.25359 * 14 13 12 39 39 H 1.09000 * 109.58889 * 185.71400 * 15 14 13 40 40 H 1.09000 * 109.58968 * 65.43322 * 15 14 13 41 41 H 1.08996 * 109.47552 * 180.27865 * 22 21 20 42 42 H 1.09008 * 109.47052 * 300.27885 * 22 21 20 43 43 H 1.09000 * 109.46989 * 60.27629 * 22 21 20 44 44 H 1.08995 * 109.47601 * 270.04784 * 25 24 23 45 45 H 1.09004 * 109.46911 * 30.04560 * 25 24 23 46 46 H 1.08994 * 109.47012 * 150.04172 * 25 24 23 47 47 H 1.09000 * 109.58859 * 66.17938 * 26 16 15 48 48 H 1.08997 * 109.59048 * 186.46134 * 26 16 15 49 49 H 1.09006 * 109.49408 * 58.67446 * 27 13 12 50 50 H 1.08996 * 109.52009 * 298.59233 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2549 2.0239 -1.1858 5 1 2.7457 2.9859 -1.1902 6 6 1.8639 1.4388 -2.3823 7 7 0.9799 0.4637 -2.3802 8 14 2.5923 2.0355 -3.9957 9 1 4.0658 1.8522 -3.9714 10 1 2.0143 1.2544 -5.1186 11 1 2.2754 3.4746 -4.1796 12 6 2.2534 2.0750 1.2688 13 6 3.6884 1.8172 1.7327 14 6 4.6670 2.3865 0.7024 15 6 6.1021 2.0993 1.1548 16 7 6.2848 2.6199 2.5166 17 6 7.2980 3.4626 2.7994 18 8 7.3536 4.0031 3.8874 19 6 8.3387 3.7290 1.7899 20 7 8.4808 3.1024 0.5905 21 6 9.5086 3.6109 -0.0206 22 6 10.0069 3.1979 -1.3815 23 8 10.0586 4.5576 0.7529 24 6 9.3417 4.6439 1.8848 25 6 9.5992 5.5760 3.0406 26 6 5.3424 2.2042 3.5642 27 6 3.9157 2.4931 3.0869 28 1 -0.3633 -1.0265 0.0489 29 1 -0.3634 0.5556 0.8644 30 1 -0.3634 0.4707 -0.9135 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.7070 0.0545 -3.2163 34 1 1.5564 1.7042 2.0203 35 1 2.1030 3.1458 1.1306 36 1 3.8511 0.7439 1.8307 37 1 4.5200 3.4634 0.6201 38 1 4.4908 1.9196 -0.2667 39 1 6.8032 2.5893 0.4792 40 1 6.2792 1.0238 1.1480 41 1 10.8856 3.7881 -1.6412 42 1 10.2710 2.1404 -1.3662 43 1 9.2244 3.3662 -2.1214 44 1 10.2657 5.0932 3.7553 45 1 10.0626 6.4915 2.6728 46 1 8.6556 5.8176 3.5297 47 1 5.4549 1.1368 3.7544 48 1 5.5437 2.7615 4.4791 49 1 3.2028 2.1019 3.8128 50 1 3.7772 3.5694 2.9845 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733920906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:21 Heat of formation + Delta-G solvation = 3.035440 kcal Electronic energy + Delta-G solvation = -30343.890806 eV Core-core repulsion = 26373.401793 eV Total energy + Delta-G solvation = -3970.489013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55761 -41.12037 -39.08594 -37.45400 -36.15113 -34.54226 -34.09779 -32.69419 -32.04453 -30.99699 -30.81413 -28.58047 -27.18493 -25.59657 -24.68025 -24.17176 -23.60905 -22.68469 -21.98247 -21.03826 -20.16772 -18.55455 -18.48750 -18.16215 -17.25081 -16.96523 -16.74898 -16.19667 -15.70091 -15.48555 -15.28299 -15.22589 -14.90514 -14.78801 -14.50804 -14.39724 -14.32159 -14.10609 -13.74224 -13.59319 -13.57860 -13.44021 -13.25057 -13.05249 -12.94286 -12.61658 -12.50070 -12.46426 -12.34771 -12.15933 -12.02474 -11.93528 -11.68190 -11.60766 -11.34737 -11.22680 -11.13835 -10.63183 -10.26429 -9.95227 -9.57540 -8.67179 -7.64172 -5.04359 -0.01729 0.88099 1.42615 1.50981 1.53281 1.58781 1.91409 2.12912 2.59637 2.83558 3.38142 3.47646 3.56648 3.69763 3.92110 4.04264 4.11931 4.18249 4.23486 4.31449 4.41412 4.48717 4.55623 4.58619 4.64301 4.65605 4.72191 4.77693 4.83694 4.86582 4.87500 5.00269 5.05657 5.06419 5.09645 5.10983 5.13965 5.20543 5.29138 5.33586 5.45253 5.49611 5.61391 5.67340 5.73384 5.91017 6.24660 6.32710 6.46054 6.46741 6.98538 7.33932 8.03425 8.43405 9.31920 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003590 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.240164 B = 7798.395140 C = 9602.448484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.178 3.822 3 N -0.611 5.611 4 C -0.233 4.233 5 H 0.069 0.931 6 C -0.058 4.058 7 N -0.923 5.923 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.299 1.299 11 H -0.287 1.287 12 C 0.157 3.843 13 C -0.095 4.095 14 C -0.109 4.109 15 C 0.093 3.907 16 N -0.592 5.592 17 C 0.595 3.405 18 O -0.563 6.563 19 C -0.103 4.103 20 N -0.483 5.483 21 C 0.199 3.801 22 C -0.059 4.059 23 O -0.196 6.196 24 C 0.042 3.958 25 C -0.070 4.070 26 C 0.114 3.886 27 C -0.116 4.116 28 H 0.028 0.972 29 H 0.011 0.989 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.242 0.758 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.128 0.872 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.054 5.995 8.113 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.052 3.948 3 N -0.333 5.333 4 C -0.363 4.363 5 H 0.087 0.913 6 C -0.251 4.251 7 N -0.572 5.572 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.225 1.225 11 H -0.213 1.213 12 C 0.031 3.969 13 C -0.116 4.116 14 C -0.147 4.147 15 C -0.029 4.029 16 N -0.322 5.322 17 C 0.384 3.616 18 O -0.444 6.444 19 C -0.221 4.221 20 N -0.213 5.213 21 C -0.009 4.009 22 C -0.115 4.115 23 O -0.083 6.083 24 C -0.015 4.015 25 C -0.126 4.126 26 C -0.008 4.008 27 C -0.154 4.154 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.097 0.903 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 18.632 5.705 8.290 21.176 hybrid contribution 0.078 0.487 -0.897 1.024 sum 18.710 6.192 7.393 21.049 Atomic orbital electron populations 1.22357 0.99061 0.98091 1.00367 1.20591 0.92647 0.84527 0.96988 1.44302 1.76659 1.11089 1.01295 1.19402 1.29832 1.02358 0.84665 0.91294 1.25335 0.99506 1.00375 0.99910 1.70302 1.32612 1.29768 1.24547 0.85560 0.78492 0.77016 0.80748 1.20734 1.22505 1.21331 1.20841 0.93817 0.95139 0.87103 1.21625 0.96751 0.99153 0.94056 1.21772 0.93496 0.99467 0.99964 1.22519 0.98461 0.99534 0.82393 1.48013 1.27367 1.45100 1.11751 1.16998 0.80610 0.78708 0.85255 1.90713 1.77746 1.51580 1.24340 1.21469 1.01910 1.02600 0.96146 1.70604 1.17776 1.27321 1.05644 1.27333 0.89809 0.86608 0.97198 1.20623 1.03742 1.04326 0.82856 1.84358 1.49404 1.49384 1.25178 1.24157 0.90428 0.98565 0.88342 1.20643 1.05354 0.96499 0.90104 1.21728 0.88002 1.00546 0.90481 1.21831 0.95918 1.00630 0.97053 0.95334 0.96952 0.91118 0.92546 0.96410 0.94843 0.93710 0.94815 0.92353 0.94301 0.90963 0.85481 0.92171 0.86691 0.86914 0.87501 0.87626 0.87618 0.88522 0.90345 0.89101 0.88981 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 9.67 71.98 0.70 -5.87 16 2 C 0.18 8.52 5.64 86.38 0.49 9.01 16 3 N -0.61 -29.31 2.34 -702.00 -1.65 -30.95 16 4 C -0.23 -12.19 7.81 84.03 0.66 -11.53 16 5 H 0.07 3.59 7.52 -2.91 -0.02 3.56 16 6 C -0.06 -3.12 5.09 84.86 0.43 -2.69 16 7 N -0.92 -51.69 7.76 21.65 0.17 -51.52 16 8 Si 0.95 44.24 29.59 68.60 2.03 46.27 16 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 10 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 C 0.16 6.23 5.20 86.38 0.45 6.68 16 13 C -0.09 -3.20 2.37 -10.75 -0.03 -3.23 16 14 C -0.11 -3.91 4.68 30.68 0.14 -3.76 16 15 C 0.09 2.97 6.07 86.36 0.52 3.50 16 16 N -0.59 -18.15 2.97 -822.80 -2.45 -20.60 16 17 C 0.60 18.84 7.66 86.66 0.66 19.51 16 18 O -0.56 -18.74 14.33 -4.08 -0.06 -18.80 16 19 C -0.10 -2.97 6.66 40.41 0.27 -2.70 16 20 N -0.48 -13.27 7.86 -293.04 -2.30 -15.57 16 21 C 0.20 4.20 8.30 88.39 0.73 4.93 16 22 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 23 O -0.20 -4.17 10.73 0.35 0.00 -4.16 16 24 C 0.04 0.98 7.44 25.19 0.19 1.17 16 25 C -0.07 -1.16 9.81 71.23 0.70 -0.46 16 26 C 0.11 3.08 6.44 86.36 0.56 3.63 16 27 C -0.12 -3.20 5.37 30.67 0.16 -3.03 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 3.82 5.81 -2.39 -0.01 3.81 16 31 H 0.06 3.05 6.02 -2.39 -0.01 3.03 16 32 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 33 H 0.24 13.42 8.31 -92.70 -0.77 12.65 16 34 H 0.04 1.67 8.08 -2.39 -0.02 1.66 16 35 H 0.03 1.38 8.03 -2.38 -0.02 1.36 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 3.04 6.23 -2.38 -0.01 3.03 16 39 H 0.13 4.14 4.19 -12.83 -0.05 4.09 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.10 1.93 6.64 -2.39 -0.02 1.91 16 47 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.09 2.42 7.00 -2.39 -0.02 2.40 16 49 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 50 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -65.63 387.38 4.02 -61.61 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.89 Total: 18.49 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 7.39 Total: 15.25 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -6.23 Total: -118.65 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.63 4.02 -61.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733920906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.642 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds