Wall clock time and date at job start Tue Mar 31 2020 19:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47537 * 2 1 4 4 C 1.36929 * 120.00100 * 275.31157 * 3 2 1 5 5 H 1.08003 * 120.00159 * 37.57451 * 4 3 2 6 6 C 1.38810 * 120.00044 * 217.57623 * 4 3 2 7 7 N 1.31616 * 119.99977 * 21.42352 * 6 4 3 8 8 Si 1.86800 * 120.00076 * 201.42807 * 6 4 3 9 9 H 1.48495 * 109.47362 * 89.99791 * 8 6 4 10 10 H 1.48500 * 109.47248 * 209.99901 * 8 6 4 11 11 H 1.48503 * 109.47291 * 329.99873 * 8 6 4 12 12 C 1.46498 * 119.99641 * 95.30927 * 3 2 1 13 13 C 1.53000 * 109.47073 * 270.00029 * 12 3 2 14 14 C 1.53005 * 109.46760 * 180.02562 * 13 12 3 15 15 N 1.46502 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00171 * 180.02562 * 15 14 13 17 17 O 1.21590 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.47526 * 120.00269 * 180.02562 * 16 15 14 19 19 C 1.39985 * 120.59531 * 0.02562 * 18 16 15 20 20 C 1.38348 * 118.34750 * 179.71137 * 19 18 16 21 21 C 1.38355 * 119.45671 * 0.53083 * 20 19 18 22 22 C 1.50701 * 119.40674 * 179.72996 * 21 20 19 23 23 C 1.52998 * 109.47107 * 84.72764 * 22 21 20 24 24 C 1.52997 * 109.46884 * 324.72885 * 22 21 20 25 25 N 1.31885 * 121.18459 * 359.45343 * 21 20 19 26 26 C 1.32234 * 121.79906 * 0.27148 * 25 21 20 27 27 O 1.35426 * 119.79599 * 179.97438 * 26 25 21 28 28 H 1.09000 * 109.46766 * 59.99514 * 1 2 3 29 29 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46746 * 299.99816 * 1 2 3 31 31 H 1.08998 * 109.47111 * 239.99754 * 2 1 3 32 32 H 1.09001 * 109.47285 * 120.00540 * 2 1 3 33 33 H 0.97002 * 120.00076 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47093 * 150.00151 * 12 3 2 35 35 H 1.08995 * 109.47513 * 30.00132 * 12 3 2 36 36 H 1.09004 * 109.47163 * 60.00884 * 13 12 3 37 37 H 1.08994 * 109.47300 * 299.99916 * 13 12 3 38 38 H 1.09001 * 109.47155 * 60.00971 * 14 13 12 39 39 H 1.08995 * 109.47649 * 299.99995 * 14 13 12 40 40 H 0.97001 * 120.00393 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.82972 * 0.02562 * 19 18 16 42 42 H 1.07995 * 120.26795 * 180.25818 * 20 19 18 43 43 H 1.09000 * 109.47144 * 204.72786 * 22 21 20 44 44 H 1.09007 * 109.47430 * 60.00009 * 23 22 21 45 45 H 1.08998 * 109.47628 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47524 * 300.00396 * 23 22 21 47 47 H 1.09000 * 109.47311 * 60.00003 * 24 22 21 48 48 H 1.09001 * 109.47064 * 179.97438 * 24 22 21 49 49 H 1.08995 * 109.47217 * 299.99638 * 24 22 21 50 50 H 0.96708 * 114.00149 * 90.00914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1432 2.0633 -1.1807 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3727 7 7 4.3028 2.7979 -0.6489 8 14 3.0995 4.2795 -2.6583 9 1 2.5378 5.5068 -2.0393 10 1 4.4551 4.5696 -3.1907 11 1 2.2168 3.8358 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8366 14 6 1.5136 3.4190 3.1557 15 7 0.3351 4.0941 3.7049 16 6 0.4251 4.7658 4.8699 17 8 1.4843 4.8111 5.4653 18 6 -0.7617 5.4452 5.4233 19 6 -1.9877 5.3998 4.7491 20 6 -3.0719 6.0482 5.3131 21 6 -2.9130 6.7253 6.5091 22 6 -4.0934 7.4363 7.1194 23 6 -4.9145 6.4446 7.9459 24 6 -4.9674 8.0202 6.0077 25 7 -1.7485 6.7551 7.1275 26 6 -0.6822 6.1478 6.6348 27 8 0.4940 6.2052 7.3036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 5.0493 3.4026 -0.7834 34 1 3.1619 2.7640 1.0860 35 1 2.7255 1.2832 1.9721 36 1 0.3542 2.0068 2.0140 37 1 0.7905 3.4876 1.1278 38 1 2.3019 4.1505 2.9779 39 1 1.8661 2.6700 3.8647 40 1 -0.5100 4.0578 3.2302 41 1 -2.0860 4.8676 3.8145 42 1 -4.0333 6.0296 4.8215 43 1 -3.7394 8.2409 7.7638 44 1 -4.2918 6.0285 8.7379 45 1 -5.7685 6.9587 8.3870 46 1 -5.2685 5.6399 7.3015 47 1 -5.3214 7.2156 5.3632 48 1 -5.8214 8.5341 6.4490 49 1 -4.3825 8.7267 5.4189 50 1 0.6209 5.4869 7.9386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752215725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:18 Heat of formation + Delta-G solvation = -36.565568 kcal Electronic energy + Delta-G solvation = -28624.822869 eV Core-core repulsion = 24652.616628 eV Total energy + Delta-G solvation = -3972.206242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16671 -39.20639 -37.68589 -36.43174 -35.45503 -34.75877 -33.02675 -31.87785 -31.21098 -29.94119 -28.49671 -27.62465 -25.79449 -24.73634 -23.73980 -23.31839 -21.48949 -21.09854 -20.55298 -20.03476 -18.61978 -17.74779 -17.33550 -16.68177 -16.18071 -15.57545 -15.39241 -15.18895 -14.85082 -14.74574 -14.43587 -14.07913 -14.01191 -13.68019 -13.51350 -13.38226 -13.07655 -12.87040 -12.60381 -12.47284 -12.38626 -11.98629 -11.80373 -11.63429 -11.59378 -11.45407 -11.31702 -11.18072 -11.04397 -10.78091 -10.60912 -10.47392 -10.24088 -10.17708 -10.02773 -9.71860 -9.57170 -9.51038 -9.16897 -8.83854 -8.48764 -6.58410 -5.79875 -3.39441 0.31241 0.79103 2.73906 3.10118 3.28215 3.34669 3.42638 3.43230 3.54820 4.04203 4.24459 4.45809 4.48247 4.59228 4.63782 4.72871 4.78322 5.08378 5.17453 5.19082 5.23889 5.34809 5.38141 5.40258 5.47831 5.53537 5.62919 5.70164 5.78449 5.80398 5.86219 5.95374 6.05682 6.09089 6.25131 6.33058 6.40095 6.43842 6.55784 6.71860 6.74462 6.89028 7.06612 7.15256 7.30570 7.53852 7.61276 7.66257 7.81180 8.25669 8.51138 9.18360 9.80578 10.39448 11.19603 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002279 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.912298 B =12281.285393 C =12401.177570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.121 3.879 15 N -0.720 5.720 16 C 0.556 3.444 17 O -0.522 6.522 18 C -0.206 4.206 19 C -0.026 4.026 20 C -0.190 4.190 21 C 0.181 3.819 22 C -0.051 4.051 23 C -0.141 4.141 24 C -0.149 4.149 25 N -0.508 5.508 26 C 0.373 3.627 27 O -0.459 6.459 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.255 0.745 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 5.436 15.326 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.002 4.002 15 N -0.372 5.372 16 C 0.341 3.659 17 O -0.399 6.399 18 C -0.213 4.213 19 C -0.052 4.052 20 C -0.210 4.210 21 C 0.042 3.958 22 C -0.070 4.070 23 C -0.199 4.199 24 C -0.207 4.207 25 N -0.227 5.227 26 C 0.193 3.807 27 O -0.266 6.266 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -18.098 6.425 16.176 25.110 hybrid contribution -0.536 -0.045 -1.433 1.531 sum -18.635 6.380 14.743 24.603 Atomic orbital electron populations 1.22369 1.00209 0.98880 1.01057 1.20847 0.91644 0.87413 0.98739 1.43742 1.76048 1.08177 1.02491 1.18979 1.04671 1.21246 0.94175 0.92310 1.25196 0.94218 1.01291 0.98070 1.69994 1.03181 1.37209 1.42379 0.86414 0.76986 0.82635 0.81476 1.21310 1.21704 1.20291 1.20794 0.94399 0.96670 0.85779 1.22550 1.02460 0.99858 0.93852 1.21525 0.86843 0.96154 0.95654 1.46091 1.14628 1.53534 1.22934 1.17826 0.87497 0.79090 0.81450 1.90818 1.28961 1.60505 1.59578 1.21229 0.95787 1.04635 0.99630 1.21777 0.90918 0.94253 0.98302 1.21928 1.00486 1.01055 0.97481 1.21198 0.91596 0.92375 0.90610 1.20163 0.91340 0.97971 0.97538 1.21808 0.99580 0.98756 0.99772 1.21950 0.99526 1.01181 0.98007 1.67108 0.98919 1.20804 1.35830 1.19138 0.84747 0.88410 0.88411 1.84732 1.30406 1.53498 1.57961 0.93275 0.94635 0.93851 0.93878 0.94840 0.93463 0.88711 0.95627 0.93049 0.91705 0.91271 0.91778 0.76969 0.83797 0.83598 0.88858 0.92194 0.91566 0.92265 0.91877 0.91522 0.92118 0.73534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.21 37.16 0.38 -2.49 16 2 C 0.14 2.88 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.99 2.43 -173.24 -0.42 -14.41 16 4 C -0.26 -6.91 9.45 -15.06 -0.14 -7.05 16 5 H 0.06 1.57 7.92 -52.48 -0.42 1.15 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.14 11.47 55.49 0.64 -24.51 16 8 Si 0.90 21.26 29.60 -169.99 -5.03 16.22 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.15 3.35 5.33 -4.04 -0.02 3.33 16 13 C -0.15 -2.63 5.65 -26.73 -0.15 -2.79 16 14 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 15 N -0.72 -10.04 5.51 -61.35 -0.34 -10.38 16 16 C 0.56 8.44 7.77 -12.48 -0.10 8.34 16 17 O -0.52 -9.69 15.19 -16.48 -0.25 -9.94 16 18 C -0.21 -2.60 5.90 -104.69 -0.62 -3.21 16 19 C -0.03 -0.25 9.64 -38.89 -0.37 -0.62 16 20 C -0.19 -1.54 9.15 -39.50 -0.36 -1.90 16 21 C 0.18 1.71 5.79 -82.53 -0.48 1.23 16 22 C -0.05 -0.35 3.22 -91.77 -0.30 -0.64 16 23 C -0.14 -0.78 9.17 37.16 0.34 -0.44 16 24 C -0.15 -0.75 8.62 37.16 0.32 -0.43 16 25 N -0.51 -6.18 10.28 -9.21 -0.09 -6.28 16 26 C 0.37 4.94 7.77 -16.61 -0.13 4.81 16 27 O -0.46 -6.22 11.66 -39.74 -0.46 -6.68 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.72 6.64 -51.92 -0.34 0.38 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 35 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.05 0.86 6.64 -51.93 -0.34 0.51 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.40 4.40 6.57 -40.82 -0.27 4.14 16 41 H 0.14 0.99 6.52 -52.49 -0.34 0.64 16 42 H 0.15 0.77 6.29 -52.49 -0.33 0.44 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 45 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.26 6.47 -51.93 -0.34 -0.08 16 48 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.40 3.75 9.06 45.56 0.41 4.16 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -33.12 405.49 -8.89 -42.01 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.28 Total: 4.62 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.76 Total: 3.23 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.22 Total: -55.57 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.71 Total: -16.62 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.12 -8.89 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752215725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.444 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds