Wall clock time and date at job start Tue Mar 31 2020 19:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47537 * 2 1 4 4 C 1.36929 * 120.00100 * 275.31157 * 3 2 1 5 5 H 1.08003 * 120.00159 * 37.57451 * 4 3 2 6 6 C 1.38810 * 120.00044 * 217.57623 * 4 3 2 7 7 N 1.31616 * 119.99977 * 21.42352 * 6 4 3 8 8 Si 1.86800 * 120.00076 * 201.42807 * 6 4 3 9 9 H 1.48495 * 109.47362 * 89.99791 * 8 6 4 10 10 H 1.48500 * 109.47248 * 209.99901 * 8 6 4 11 11 H 1.48503 * 109.47291 * 329.99873 * 8 6 4 12 12 C 1.46498 * 119.99641 * 95.30927 * 3 2 1 13 13 C 1.53000 * 109.47073 * 270.00029 * 12 3 2 14 14 C 1.53005 * 109.46760 * 180.02562 * 13 12 3 15 15 N 1.46502 * 109.46850 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00171 * 180.02562 * 15 14 13 17 17 O 1.21590 * 119.99954 * 359.97438 * 16 15 14 18 18 C 1.47526 * 120.00269 * 180.02562 * 16 15 14 19 19 C 1.39985 * 120.59531 * 0.02562 * 18 16 15 20 20 C 1.38348 * 118.34750 * 179.71137 * 19 18 16 21 21 C 1.38355 * 119.45671 * 0.53083 * 20 19 18 22 22 C 1.50701 * 119.40674 * 179.72996 * 21 20 19 23 23 C 1.52998 * 109.47107 * 84.72764 * 22 21 20 24 24 C 1.52997 * 109.46884 * 324.72885 * 22 21 20 25 25 N 1.31885 * 121.18459 * 359.45343 * 21 20 19 26 26 C 1.32234 * 121.79906 * 0.27148 * 25 21 20 27 27 O 1.35426 * 119.79599 * 179.97438 * 26 25 21 28 28 H 1.09000 * 109.46766 * 59.99514 * 1 2 3 29 29 H 1.08996 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46746 * 299.99816 * 1 2 3 31 31 H 1.08998 * 109.47111 * 239.99754 * 2 1 3 32 32 H 1.09001 * 109.47285 * 120.00540 * 2 1 3 33 33 H 0.97002 * 120.00076 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47093 * 150.00151 * 12 3 2 35 35 H 1.08995 * 109.47513 * 30.00132 * 12 3 2 36 36 H 1.09004 * 109.47163 * 60.00884 * 13 12 3 37 37 H 1.08994 * 109.47300 * 299.99916 * 13 12 3 38 38 H 1.09001 * 109.47155 * 60.00971 * 14 13 12 39 39 H 1.08995 * 109.47649 * 299.99995 * 14 13 12 40 40 H 0.97001 * 120.00393 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.82972 * 0.02562 * 19 18 16 42 42 H 1.07995 * 120.26795 * 180.25818 * 20 19 18 43 43 H 1.09000 * 109.47144 * 204.72786 * 22 21 20 44 44 H 1.09007 * 109.47430 * 60.00009 * 23 22 21 45 45 H 1.08998 * 109.47628 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47524 * 300.00396 * 23 22 21 47 47 H 1.09000 * 109.47311 * 60.00003 * 24 22 21 48 48 H 1.09001 * 109.47064 * 179.97438 * 24 22 21 49 49 H 1.08995 * 109.47217 * 299.99638 * 24 22 21 50 50 H 0.96708 * 114.00149 * 90.00914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1432 2.0633 -1.1807 5 1 1.4106 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3727 7 7 4.3028 2.7979 -0.6489 8 14 3.0995 4.2795 -2.6583 9 1 2.5378 5.5068 -2.0393 10 1 4.4551 4.5696 -3.1907 11 1 2.2168 3.8358 -3.7670 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7382 1.8366 14 6 1.5136 3.4190 3.1557 15 7 0.3351 4.0941 3.7049 16 6 0.4251 4.7658 4.8699 17 8 1.4843 4.8111 5.4653 18 6 -0.7617 5.4452 5.4233 19 6 -1.9877 5.3998 4.7491 20 6 -3.0719 6.0482 5.3131 21 6 -2.9130 6.7253 6.5091 22 6 -4.0934 7.4363 7.1194 23 6 -4.9145 6.4446 7.9459 24 6 -4.9674 8.0202 6.0077 25 7 -1.7485 6.7551 7.1275 26 6 -0.6822 6.1478 6.6348 27 8 0.4940 6.2052 7.3036 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8899 33 1 5.0493 3.4026 -0.7834 34 1 3.1619 2.7640 1.0860 35 1 2.7255 1.2832 1.9721 36 1 0.3542 2.0068 2.0140 37 1 0.7905 3.4876 1.1278 38 1 2.3019 4.1505 2.9779 39 1 1.8661 2.6700 3.8647 40 1 -0.5100 4.0578 3.2302 41 1 -2.0860 4.8676 3.8145 42 1 -4.0333 6.0296 4.8215 43 1 -3.7394 8.2409 7.7638 44 1 -4.2918 6.0285 8.7379 45 1 -5.7685 6.9587 8.3870 46 1 -5.2685 5.6399 7.3015 47 1 -5.3214 7.2156 5.3632 48 1 -5.8214 8.5341 6.4490 49 1 -4.3825 8.7267 5.4189 50 1 0.6209 5.4869 7.9386 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752215725.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:18 Heat of formation + Delta-G solvation = -59.465698 kcal Electronic energy + Delta-G solvation = -28625.815894 eV Core-core repulsion = 24652.616628 eV Total energy + Delta-G solvation = -3973.199266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04291 -40.32482 -38.59477 -38.12680 -36.27765 -35.98244 -33.96624 -33.77408 -32.54975 -30.86002 -30.09577 -28.01465 -27.26633 -25.97660 -25.04690 -24.28537 -22.60206 -22.37852 -21.92454 -21.33132 -19.52610 -18.76378 -18.62882 -18.13318 -17.13890 -16.93725 -16.60106 -16.53174 -16.06853 -15.73300 -15.65795 -15.26923 -15.13232 -14.90726 -14.65462 -14.24686 -14.19350 -14.05096 -13.91691 -13.48887 -13.24064 -13.17145 -12.86491 -12.83253 -12.75011 -12.71989 -12.58020 -12.39874 -12.30566 -12.12701 -12.06298 -11.92029 -11.82871 -11.45541 -11.26078 -11.20427 -11.05085 -10.49935 -10.47528 -10.22623 -9.86981 -8.54084 -7.80103 -5.44356 -0.54290 0.02848 1.45268 1.48174 1.55765 1.72759 2.00472 2.40573 2.51297 2.66242 3.24696 3.32668 3.57687 3.63265 3.68107 3.88205 4.06861 4.11877 4.16285 4.25226 4.32618 4.42027 4.46476 4.54776 4.59828 4.74235 4.75756 4.78014 4.83183 4.86721 4.90679 4.96647 5.00649 5.03426 5.05534 5.17900 5.21101 5.34829 5.35632 5.37443 5.42045 5.44187 5.47210 5.62377 5.71036 5.85727 6.41960 6.49040 6.51753 6.78275 7.12060 7.19941 7.90004 8.42233 9.14365 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.002279 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.912298 B =12281.285393 C =12401.177570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.260 4.260 5 H 0.057 0.943 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.267 1.267 12 C 0.150 3.850 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.708 5.708 16 C 0.556 3.444 17 O -0.565 6.565 18 C -0.225 4.225 19 C -0.018 4.018 20 C -0.178 4.178 21 C 0.176 3.824 22 C -0.051 4.051 23 C -0.138 4.138 24 C -0.146 4.146 25 N -0.530 5.530 26 C 0.354 3.646 27 O -0.481 6.481 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.412 0.588 41 H 0.174 0.826 42 H 0.185 0.815 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.052 0.948 50 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.293 5.301 14.902 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.391 4.391 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.191 1.191 12 C 0.023 3.977 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.343 3.657 17 O -0.445 6.445 18 C -0.232 4.232 19 C -0.044 4.044 20 C -0.197 4.197 21 C 0.038 3.962 22 C -0.070 4.070 23 C -0.196 4.196 24 C -0.204 4.204 25 N -0.250 5.250 26 C 0.175 3.825 27 O -0.290 6.290 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.191 0.809 42 H 0.202 0.798 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -22.097 6.268 15.745 27.847 hybrid contribution 0.615 -0.048 -1.239 1.384 sum -21.482 6.221 14.506 26.657 Atomic orbital electron populations 1.22165 0.97091 1.00796 1.00935 1.21006 0.93974 0.85638 0.98581 1.43988 1.76445 1.09582 1.02240 1.19181 1.03989 1.21059 0.94861 0.92575 1.25856 0.94073 1.03399 1.00157 1.70130 1.03806 1.38055 1.44277 0.85493 0.76525 0.80147 0.79667 1.21252 1.22453 1.19146 1.20694 0.95310 0.96117 0.85599 1.22171 1.00774 0.99584 0.93693 1.21176 0.87202 0.95503 0.95126 1.45833 1.14505 1.52977 1.22731 1.18219 0.87810 0.78533 0.81105 1.90792 1.30841 1.62067 1.60792 1.21029 0.96021 1.05943 1.00197 1.22120 0.89672 0.93740 0.98839 1.22322 1.01599 0.99232 0.96550 1.21848 0.91367 0.91954 0.91058 1.20268 0.90781 0.97756 0.98191 1.21798 0.99577 0.98831 0.99356 1.21957 0.99395 1.01566 0.97444 1.67142 0.99625 1.21416 1.36821 1.19329 0.84921 0.89345 0.88939 1.84676 1.31338 1.54431 1.58582 0.94446 0.91701 0.92821 0.95379 0.93739 0.94090 0.92400 0.95348 0.90742 0.92828 0.93905 0.91794 0.75004 0.80911 0.79823 0.90024 0.93740 0.89909 0.91201 0.90232 0.90111 0.92909 0.72271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 10.21 71.98 0.73 -4.04 16 2 C 0.13 5.31 6.44 86.38 0.56 5.86 16 3 N -0.60 -28.57 2.43 -702.01 -1.71 -30.28 16 4 C -0.26 -13.77 9.45 84.03 0.79 -12.98 16 5 H 0.06 2.96 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16 7 N -0.92 -53.57 11.47 21.65 0.25 -53.32 16 8 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 9 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 C 0.15 6.69 5.33 86.38 0.46 7.15 16 13 C -0.12 -4.25 5.65 30.60 0.17 -4.08 16 14 C 0.13 4.41 5.67 86.38 0.49 4.90 16 15 N -0.71 -18.92 5.51 -466.28 -2.57 -21.49 16 16 C 0.56 16.84 7.77 86.69 0.67 17.52 16 17 O -0.57 -21.74 15.19 16.82 0.26 -21.48 16 18 C -0.23 -5.51 5.90 -19.91 -0.12 -5.62 16 19 C -0.02 -0.29 9.64 22.72 0.22 -0.07 16 20 C -0.18 -2.27 9.15 22.32 0.20 -2.07 16 21 C 0.18 3.00 5.79 42.58 0.25 3.25 16 22 C -0.05 -0.58 3.22 -11.54 -0.04 -0.61 16 23 C -0.14 -1.18 9.17 71.98 0.66 -0.52 16 24 C -0.15 -0.97 8.62 71.98 0.62 -0.35 16 25 N -0.53 -12.79 10.28 -296.06 -3.04 -15.83 16 26 C 0.35 9.51 7.77 85.13 0.66 10.17 16 27 O -0.48 -13.80 11.66 -66.40 -0.77 -14.57 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.58 6.64 -2.38 -0.02 1.57 16 31 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.04 1.65 7.83 -2.39 -0.02 1.63 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.06 3.07 5.52 -2.39 -0.01 3.06 16 35 H 0.03 1.22 7.86 -2.39 -0.02 1.20 16 36 H 0.07 2.26 6.64 -2.38 -0.02 2.25 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.41 8.09 6.57 -92.71 -0.61 7.48 16 41 H 0.17 1.62 6.52 -2.91 -0.02 1.61 16 42 H 0.18 0.94 6.29 -2.91 -0.02 0.92 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 45 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.08 0.27 6.47 -2.39 -0.02 0.25 16 48 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.42 8.54 9.06 -74.05 -0.67 7.86 16 Total: -1.00 -74.35 405.49 0.88 -73.47 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.32 Total: 20.52 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.76 Total: 16.88 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.07 Total: -120.92 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.52 Total: -36.06 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.35 0.88 -73.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752215725.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.003 kcal (2) G-P(sol) polarization free energy of solvation -74.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds