Wall clock time and date at job start Tue Mar 31 2020 19:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.46813 * 2 1 4 4 C 1.36931 * 120.00255 * 275.30704 * 3 2 1 5 5 H 1.07997 * 119.99797 * 37.58633 * 4 3 2 6 6 C 1.38808 * 120.00018 * 217.57638 * 4 3 2 7 7 N 1.31615 * 120.00065 * 21.43122 * 6 4 3 8 8 Si 1.86800 * 120.00176 * 201.42572 * 6 4 3 9 9 H 1.48497 * 109.47093 * 60.00334 * 8 6 4 10 10 H 1.48499 * 109.47056 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47176 * 300.00582 * 8 6 4 12 12 C 1.46508 * 119.99441 * 95.31052 * 3 2 1 13 13 C 1.52991 * 109.47076 * 269.99931 * 12 3 2 14 14 C 1.53008 * 109.47243 * 180.02562 * 13 12 3 15 15 N 1.46493 * 109.47134 * 180.02562 * 14 13 12 16 16 C 1.34783 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99575 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00148 * 179.97438 * 16 15 14 19 19 C 1.39993 * 120.59521 * 0.27196 * 18 16 15 20 20 C 1.38336 * 118.34313 * 180.22050 * 19 18 16 21 21 C 1.38356 * 119.46129 * 359.50918 * 20 19 18 22 22 N 1.31874 * 121.18460 * 0.24960 * 21 20 19 23 23 C 1.32237 * 121.80101 * 0.02562 * 22 21 20 24 24 O 1.35428 * 119.80044 * 180.02562 * 23 22 21 25 25 C 1.42897 * 116.99945 * 0.02562 * 24 23 22 26 26 C 1.53003 * 109.47546 * 89.99655 * 25 24 23 27 27 C 1.53007 * 109.47345 * 209.99564 * 25 24 23 28 28 H 1.09006 * 109.47087 * 59.99685 * 1 2 3 29 29 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47154 * 299.99538 * 1 2 3 31 31 H 1.09003 * 109.47247 * 240.00539 * 2 1 3 32 32 H 1.08999 * 109.47253 * 119.99946 * 2 1 3 33 33 H 0.97003 * 120.00426 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.46727 * 149.99862 * 12 3 2 35 35 H 1.08999 * 109.47232 * 30.00063 * 12 3 2 36 36 H 1.09000 * 109.47547 * 59.99931 * 13 12 3 37 37 H 1.09007 * 109.47188 * 299.99845 * 13 12 3 38 38 H 1.08994 * 109.47032 * 59.99641 * 14 13 12 39 39 H 1.09007 * 109.46514 * 299.99782 * 14 13 12 40 40 H 0.97001 * 120.00519 * 359.97438 * 15 14 13 41 41 H 1.07995 * 120.82930 * 359.97438 * 19 18 16 42 42 H 1.08003 * 120.26634 * 179.78037 * 20 19 18 43 43 H 1.07998 * 119.40561 * 180.23123 * 21 20 19 44 44 H 1.08998 * 109.47086 * 329.99333 * 25 24 23 45 45 H 1.08997 * 109.46894 * 300.00138 * 26 25 24 46 46 H 1.08998 * 109.47191 * 59.99742 * 26 25 24 47 47 H 1.09005 * 109.47031 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.46825 * 59.99782 * 27 25 24 49 49 H 1.08990 * 109.47303 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.46859 * 300.00394 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9280 -1.9626 6 6 3.2111 2.9291 -1.3727 7 7 4.3025 2.7982 -0.6489 8 14 3.0993 4.2797 -2.6583 9 1 1.9627 5.1787 -2.3342 10 1 4.3621 5.0609 -2.6665 11 1 2.8844 3.6728 -3.9965 12 6 2.3731 2.0327 1.2634 13 6 1.1425 2.7381 1.8367 14 6 1.5132 3.4190 3.1558 15 7 0.3347 4.0939 3.7050 16 6 0.4244 4.7647 4.8706 17 8 1.4833 4.8093 5.4664 18 6 -0.7622 5.4449 5.4234 19 6 -1.9890 5.3969 4.7507 20 6 -3.0702 6.0551 5.3087 21 6 -2.9131 6.7264 6.5082 22 7 -1.7493 6.7545 7.1277 23 6 -0.6830 6.1469 6.6353 24 8 0.4924 6.2015 7.3058 25 6 0.5051 6.9308 8.5345 26 6 0.1566 5.9900 9.6897 27 6 1.8973 7.5233 8.7617 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0490 3.4029 -0.7832 34 1 3.1615 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.3540 2.0067 2.0139 37 1 0.7902 3.4876 1.1279 38 1 2.3015 4.1504 2.9782 39 1 1.8657 2.6697 3.8648 40 1 -0.5102 4.0581 3.2299 41 1 -2.0878 4.8628 3.8173 42 1 -4.0303 6.0413 4.8142 43 1 -3.7588 7.2368 6.9450 44 1 -0.2288 7.7353 8.4871 45 1 -0.8352 5.5679 9.5279 46 1 0.8904 5.1855 9.7371 47 1 0.1667 6.5463 10.6271 48 1 2.1456 8.1936 7.9388 49 1 1.9068 8.0799 9.6987 50 1 2.6313 6.7188 8.8091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752239756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:24 Heat of formation + Delta-G solvation = -26.963963 kcal Electronic energy + Delta-G solvation = -28913.281523 eV Core-core repulsion = 24941.491639 eV Total energy + Delta-G solvation = -3971.789885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11381 -39.09787 -38.36383 -36.40754 -34.75212 -33.43033 -33.05838 -31.85210 -31.16056 -30.36354 -28.48335 -27.46078 -25.66297 -24.64944 -23.97144 -23.16318 -21.49225 -21.04070 -20.59092 -19.99945 -18.76892 -17.50057 -17.14178 -16.64339 -16.01305 -15.51241 -15.31432 -15.23324 -14.81410 -14.65086 -14.41056 -14.15275 -13.87002 -13.69015 -13.41051 -13.19626 -13.17648 -12.66417 -12.55989 -12.52123 -12.47054 -12.35175 -12.14821 -11.58529 -11.40965 -11.16093 -11.12672 -11.01336 -10.97841 -10.73222 -10.56752 -10.47414 -10.21394 -10.17516 -10.02746 -9.71559 -9.54286 -9.50200 -8.87795 -8.64697 -8.45843 -6.55243 -5.77363 -3.36677 0.46863 0.97499 2.79458 2.91033 3.27783 3.36909 3.43518 3.44274 3.68146 3.97125 4.43989 4.48180 4.57506 4.66222 4.73184 4.77629 4.86543 5.01482 5.18601 5.27817 5.34637 5.42230 5.50877 5.53587 5.56982 5.61989 5.69164 5.74822 5.86647 5.93249 5.97927 6.00030 6.09831 6.11514 6.30480 6.36778 6.44909 6.50216 6.59986 6.76550 6.81422 6.91908 7.09690 7.10923 7.18739 7.47813 7.69472 7.70813 7.83168 8.39989 8.53736 9.20982 9.83369 10.42418 11.22154 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002454 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.423146 B =11405.017234 C =11824.674621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.123 3.877 15 N -0.723 5.723 16 C 0.557 3.443 17 O -0.517 6.517 18 C -0.207 4.207 19 C -0.009 4.009 20 C -0.223 4.223 21 C 0.163 3.837 22 N -0.547 5.547 23 C 0.374 3.626 24 O -0.262 6.262 25 C 0.075 3.925 26 C -0.167 4.167 27 C -0.150 4.150 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.395 0.605 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 7.511 17.279 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.001 4.001 15 N -0.375 5.375 16 C 0.342 3.658 17 O -0.394 6.394 18 C -0.214 4.214 19 C -0.035 4.035 20 C -0.243 4.243 21 C 0.006 3.994 22 N -0.271 5.271 23 C 0.194 3.806 24 O -0.167 6.167 25 C 0.019 3.981 26 C -0.225 4.225 27 C -0.207 4.207 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.180 0.820 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.432 7.924 18.428 24.141 hybrid contribution -0.882 0.430 -1.584 1.863 sum -14.313 8.353 16.844 23.630 Atomic orbital electron populations 1.22371 1.00213 0.98865 1.01073 1.20847 0.91648 0.87423 0.98714 1.43742 1.76079 1.08165 1.02498 1.18924 1.04665 1.21333 0.94189 0.92405 1.25187 0.94216 1.01281 0.98049 1.69985 1.03157 1.37302 1.42339 0.86494 0.76934 0.82416 0.81667 1.20937 1.21597 1.20749 1.20791 0.94429 0.96657 0.85734 1.22541 1.02395 0.99849 0.93904 1.21487 0.86902 0.96118 0.95554 1.46058 1.14509 1.53954 1.22999 1.17783 0.87570 0.79168 0.81263 1.90834 1.28964 1.60285 1.59278 1.20157 0.96330 1.07630 0.97256 1.21699 0.90554 0.93324 0.97890 1.21919 1.00477 1.03125 0.98779 1.22637 0.93408 0.92537 0.90841 1.67414 1.00055 1.23622 1.36042 1.19835 0.85411 0.87700 0.87619 1.86617 1.26429 1.68546 1.35071 1.22442 0.99228 0.94517 0.81922 1.22209 1.02318 1.00256 0.97673 1.21883 0.95260 1.01401 1.02147 0.93288 0.94654 0.93818 0.93905 0.94842 0.93433 0.88730 0.95654 0.93077 0.91730 0.91391 0.91888 0.77092 0.83721 0.83902 0.81982 0.89453 0.92211 0.91734 0.91137 0.91773 0.90651 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.21 37.16 0.38 -2.55 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -14.18 2.43 -173.24 -0.42 -14.60 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.13 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 7 N -0.89 -25.29 11.47 55.49 0.64 -24.65 16 8 Si 0.90 21.33 29.60 -169.99 -5.03 16.30 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.15 3.41 5.33 -4.04 -0.02 3.39 16 13 C -0.15 -2.70 5.65 -26.73 -0.15 -2.85 16 14 C 0.12 2.10 5.67 -4.04 -0.02 2.08 16 15 N -0.72 -10.58 5.51 -61.35 -0.34 -10.92 16 16 C 0.56 9.00 7.77 -12.47 -0.10 8.90 16 17 O -0.52 -10.31 15.19 -16.48 -0.25 -10.56 16 18 C -0.21 -2.76 5.90 -104.69 -0.62 -3.38 16 19 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 20 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16 21 C 0.16 1.33 11.17 -17.49 -0.20 1.14 16 22 N -0.55 -6.18 8.64 -12.99 -0.11 -6.30 16 23 C 0.37 5.12 7.47 -16.61 -0.12 5.00 16 24 O -0.26 -3.88 7.86 -39.75 -0.31 -4.19 16 25 C 0.08 0.83 3.11 -26.73 -0.08 0.75 16 26 C -0.17 -1.59 9.53 37.16 0.35 -1.24 16 27 C -0.15 -1.43 9.56 37.16 0.36 -1.08 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.74 6.64 -51.93 -0.34 0.40 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.10 2.45 5.52 -51.93 -0.29 2.17 16 35 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.39 4.61 6.57 -40.82 -0.27 4.34 16 41 H 0.15 1.03 6.52 -52.49 -0.34 0.69 16 42 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.09 0.93 6.98 -51.93 -0.36 0.56 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 408.54 15.07 6.16 6.16 Total: -1.00 -32.89 408.54 -9.16 -42.05 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.23 Total: 3.02 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.25 Total: 3.69 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.24 Total: -56.46 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.56 Total: -14.75 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.89 -9.16 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752239756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.083 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds