Wall clock time and date at job start Tue Mar 31 2020 19:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.46813 * 2 1 4 4 C 1.36931 * 120.00255 * 275.30704 * 3 2 1 5 5 H 1.07997 * 119.99797 * 37.58633 * 4 3 2 6 6 C 1.38808 * 120.00018 * 217.57638 * 4 3 2 7 7 N 1.31615 * 120.00065 * 21.43122 * 6 4 3 8 8 Si 1.86800 * 120.00176 * 201.42572 * 6 4 3 9 9 H 1.48497 * 109.47093 * 60.00334 * 8 6 4 10 10 H 1.48499 * 109.47056 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47176 * 300.00582 * 8 6 4 12 12 C 1.46508 * 119.99441 * 95.31052 * 3 2 1 13 13 C 1.52991 * 109.47076 * 269.99931 * 12 3 2 14 14 C 1.53008 * 109.47243 * 180.02562 * 13 12 3 15 15 N 1.46493 * 109.47134 * 180.02562 * 14 13 12 16 16 C 1.34783 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99575 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00148 * 179.97438 * 16 15 14 19 19 C 1.39993 * 120.59521 * 0.27196 * 18 16 15 20 20 C 1.38336 * 118.34313 * 180.22050 * 19 18 16 21 21 C 1.38356 * 119.46129 * 359.50918 * 20 19 18 22 22 N 1.31874 * 121.18460 * 0.24960 * 21 20 19 23 23 C 1.32237 * 121.80101 * 0.02562 * 22 21 20 24 24 O 1.35428 * 119.80044 * 180.02562 * 23 22 21 25 25 C 1.42897 * 116.99945 * 0.02562 * 24 23 22 26 26 C 1.53003 * 109.47546 * 89.99655 * 25 24 23 27 27 C 1.53007 * 109.47345 * 209.99564 * 25 24 23 28 28 H 1.09006 * 109.47087 * 59.99685 * 1 2 3 29 29 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47154 * 299.99538 * 1 2 3 31 31 H 1.09003 * 109.47247 * 240.00539 * 2 1 3 32 32 H 1.08999 * 109.47253 * 119.99946 * 2 1 3 33 33 H 0.97003 * 120.00426 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.46727 * 149.99862 * 12 3 2 35 35 H 1.08999 * 109.47232 * 30.00063 * 12 3 2 36 36 H 1.09000 * 109.47547 * 59.99931 * 13 12 3 37 37 H 1.09007 * 109.47188 * 299.99845 * 13 12 3 38 38 H 1.08994 * 109.47032 * 59.99641 * 14 13 12 39 39 H 1.09007 * 109.46514 * 299.99782 * 14 13 12 40 40 H 0.97001 * 120.00519 * 359.97438 * 15 14 13 41 41 H 1.07995 * 120.82930 * 359.97438 * 19 18 16 42 42 H 1.08003 * 120.26634 * 179.78037 * 20 19 18 43 43 H 1.07998 * 119.40561 * 180.23123 * 21 20 19 44 44 H 1.08998 * 109.47086 * 329.99333 * 25 24 23 45 45 H 1.08997 * 109.46894 * 300.00138 * 26 25 24 46 46 H 1.08998 * 109.47191 * 59.99742 * 26 25 24 47 47 H 1.09005 * 109.47031 * 179.97438 * 26 25 24 48 48 H 1.09004 * 109.46825 * 59.99782 * 27 25 24 49 49 H 1.08990 * 109.47303 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.46859 * 300.00394 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9280 -1.9626 6 6 3.2111 2.9291 -1.3727 7 7 4.3025 2.7982 -0.6489 8 14 3.0993 4.2797 -2.6583 9 1 1.9627 5.1787 -2.3342 10 1 4.3621 5.0609 -2.6665 11 1 2.8844 3.6728 -3.9965 12 6 2.3731 2.0327 1.2634 13 6 1.1425 2.7381 1.8367 14 6 1.5132 3.4190 3.1558 15 7 0.3347 4.0939 3.7050 16 6 0.4244 4.7647 4.8706 17 8 1.4833 4.8093 5.4664 18 6 -0.7622 5.4449 5.4234 19 6 -1.9890 5.3969 4.7507 20 6 -3.0702 6.0551 5.3087 21 6 -2.9131 6.7264 6.5082 22 7 -1.7493 6.7545 7.1277 23 6 -0.6830 6.1469 6.6353 24 8 0.4924 6.2015 7.3058 25 6 0.5051 6.9308 8.5345 26 6 0.1566 5.9900 9.6897 27 6 1.8973 7.5233 8.7617 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0490 3.4029 -0.7832 34 1 3.1615 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.3540 2.0067 2.0139 37 1 0.7902 3.4876 1.1279 38 1 2.3015 4.1504 2.9782 39 1 1.8657 2.6697 3.8648 40 1 -0.5102 4.0581 3.2299 41 1 -2.0878 4.8628 3.8173 42 1 -4.0303 6.0413 4.8142 43 1 -3.7588 7.2368 6.9450 44 1 -0.2288 7.7353 8.4871 45 1 -0.8352 5.5679 9.5279 46 1 0.8904 5.1855 9.7371 47 1 0.1667 6.5463 10.6271 48 1 2.1456 8.1936 7.9388 49 1 1.9068 8.0799 9.6987 50 1 2.6313 6.7188 8.8091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752239756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:23 Heat of formation + Delta-G solvation = -47.586650 kcal Electronic energy + Delta-G solvation = -28914.175790 eV Core-core repulsion = 24941.491639 eV Total energy + Delta-G solvation = -3972.684152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98925 -40.29468 -39.21511 -38.16054 -36.19716 -34.25298 -34.01812 -33.77401 -32.48503 -31.28164 -30.15612 -28.22304 -27.25329 -25.83686 -25.18507 -24.32024 -22.57541 -22.37335 -22.01162 -21.48246 -19.64064 -18.61695 -18.55357 -17.95531 -17.08480 -16.89570 -16.59501 -16.42526 -16.04908 -15.73419 -15.71123 -15.43605 -15.12149 -15.01456 -14.69497 -14.25616 -14.19560 -14.05410 -13.96128 -13.42812 -13.30952 -13.23923 -13.22468 -13.16366 -12.89645 -12.73175 -12.71578 -12.54343 -12.34692 -12.13724 -11.95041 -11.92157 -11.78703 -11.46252 -11.24673 -11.18671 -11.03816 -10.58322 -10.47770 -10.14826 -9.52493 -8.53572 -7.79716 -5.43946 -0.34859 0.23630 1.46356 1.49038 1.55295 1.85313 1.98807 2.09715 2.52053 2.79876 3.22144 3.26384 3.66668 3.69480 3.75803 3.90138 3.97832 3.99364 4.16063 4.17602 4.21668 4.32378 4.46110 4.52289 4.54913 4.64343 4.74199 4.77655 4.78453 4.79148 4.84052 4.88663 4.90482 5.00945 5.05476 5.08496 5.17139 5.17510 5.20397 5.35187 5.40306 5.45819 5.47652 5.62082 5.70891 5.85429 6.27419 6.49205 6.50977 6.75405 7.19592 7.21347 7.90029 8.42779 9.14946 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002454 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.423146 B =11405.017234 C =11824.674621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.263 4.263 5 H 0.057 0.943 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.297 1.297 11 H -0.274 1.274 12 C 0.151 3.849 13 C -0.121 4.121 14 C 0.136 3.864 15 N -0.711 5.711 16 C 0.554 3.446 17 O -0.567 6.567 18 C -0.239 4.239 19 C -0.005 4.005 20 C -0.207 4.207 21 C 0.165 3.835 22 N -0.557 5.557 23 C 0.352 3.648 24 O -0.296 6.296 25 C 0.068 3.932 26 C -0.159 4.159 27 C -0.147 4.147 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.043 0.957 33 H 0.250 0.750 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.411 0.589 41 H 0.169 0.831 42 H 0.185 0.815 43 H 0.204 0.796 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.096 0.904 48 H 0.053 0.947 49 H 0.105 0.895 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 8.070 17.579 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.394 4.394 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.223 1.223 11 H -0.200 1.200 12 C 0.024 3.976 13 C -0.161 4.161 14 C 0.011 3.989 15 N -0.364 5.364 16 C 0.342 3.658 17 O -0.447 6.447 18 C -0.245 4.245 19 C -0.031 4.031 20 C -0.226 4.226 21 C 0.008 3.992 22 N -0.282 5.282 23 C 0.173 3.827 24 O -0.202 6.202 25 C 0.012 3.988 26 C -0.217 4.217 27 C -0.204 4.204 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.249 0.751 41 H 0.186 0.814 42 H 0.202 0.798 43 H 0.220 0.780 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.124 0.876 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.425 8.465 18.713 26.934 hybrid contribution 0.232 0.221 -1.641 1.672 sum -17.194 8.686 17.072 25.739 Atomic orbital electron populations 1.22166 0.97108 1.00795 1.00924 1.21006 0.93972 0.85660 0.98552 1.43989 1.76490 1.09568 1.02243 1.19146 1.04085 1.21256 0.94867 0.92573 1.25867 0.94018 1.03384 1.00169 1.70127 1.03783 1.38111 1.44256 0.85556 0.76530 0.79910 0.79770 1.20239 1.22339 1.19993 1.20683 0.95297 0.96076 0.85566 1.22163 1.00743 0.99555 0.93653 1.21135 0.87334 0.95411 0.95008 1.45810 1.14380 1.53383 1.22810 1.18301 0.88036 0.78573 0.80875 1.90799 1.31118 1.62135 1.60660 1.20043 0.96572 1.09530 0.98358 1.22044 0.89506 0.93182 0.98349 1.22387 1.01309 1.00861 0.98061 1.23474 0.93236 0.91555 0.90898 1.67485 1.00483 1.23665 1.36555 1.20054 0.85848 0.88760 0.88053 1.86579 1.27833 1.69378 1.36393 1.22667 0.99891 0.94760 0.81450 1.22155 1.01296 0.99902 0.98307 1.21907 0.94299 1.00912 1.03257 0.94377 0.91681 0.92922 0.95309 0.93838 0.94071 0.92328 0.95521 0.90895 0.92747 0.93933 0.92297 0.75099 0.81374 0.79750 0.77972 0.89076 0.93001 0.92967 0.88508 0.92833 0.87627 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 10.21 71.98 0.73 -4.19 16 2 C 0.13 5.44 6.44 86.38 0.56 6.00 16 3 N -0.60 -29.19 2.43 -702.00 -1.71 -30.89 16 4 C -0.26 -14.10 9.45 84.03 0.79 -13.31 16 5 H 0.06 2.99 7.92 -2.91 -0.02 2.96 16 6 C -0.04 -2.04 4.95 84.86 0.42 -1.62 16 7 N -0.92 -54.08 11.47 21.65 0.25 -53.83 16 8 Si 0.95 44.33 29.60 68.60 2.03 46.36 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.15 6.92 5.33 86.37 0.46 7.38 16 13 C -0.12 -4.40 5.65 30.59 0.17 -4.23 16 14 C 0.14 4.74 5.67 86.38 0.49 5.23 16 15 N -0.71 -20.63 5.51 -466.27 -2.57 -23.20 16 16 C 0.55 18.40 7.77 86.69 0.67 19.07 16 17 O -0.57 -24.02 15.19 16.82 0.26 -23.76 16 18 C -0.24 -6.27 5.90 -19.91 -0.12 -6.39 16 19 C -0.01 -0.08 9.64 22.72 0.22 0.14 16 20 C -0.21 -2.20 10.09 22.32 0.23 -1.97 16 21 C 0.17 2.10 11.17 84.71 0.95 3.05 16 22 N -0.56 -11.77 8.64 -308.01 -2.66 -14.43 16 23 C 0.35 9.68 7.47 85.13 0.64 10.32 16 24 O -0.30 -9.21 7.86 -66.41 -0.52 -9.73 16 25 C 0.07 1.54 3.11 30.60 0.10 1.63 16 26 C -0.16 -3.02 9.53 71.98 0.69 -2.33 16 27 C -0.15 -2.89 9.56 71.98 0.69 -2.20 16 28 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 1.62 6.64 -2.39 -0.02 1.60 16 31 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.06 3.17 5.52 -2.39 -0.01 3.16 16 35 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 36 H 0.07 2.34 6.64 -2.39 -0.02 2.33 16 37 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.41 8.90 6.57 -92.71 -0.61 8.29 16 41 H 0.17 1.78 6.52 -2.91 -0.02 1.76 16 42 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 43 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.09 1.92 6.98 -2.39 -0.02 1.90 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.85 408.54 3.08 -72.78 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.32 Total: 20.13 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 7.68 Total: 16.57 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.69 Total: -122.35 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.27 Total: -33.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -75.85 3.08 -72.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752239756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -75.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds