Wall clock time and date at job start Tue Mar 31 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.53003 * 109.47115 * 119.99653 * 2 1 3 5 5 N 1.46503 * 109.47173 * 65.00272 * 4 2 1 6 6 C 1.35439 * 119.46743 * 270.02436 * 5 4 2 7 7 C 1.35758 * 121.22511 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.13467 * 359.95167 * 7 6 5 9 9 C 1.39337 * 118.95903 * 0.02728 * 8 7 6 10 10 C 1.47077 * 120.58598 * 180.02562 * 9 8 7 11 11 O 1.21646 * 120.00370 * 354.14679 * 10 9 8 12 12 N 1.34784 * 120.00017 * 174.15361 * 10 9 8 13 13 C 1.46496 * 119.99789 * 185.10229 * 12 10 9 14 14 C 1.53008 * 109.46611 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47224 * 305.00027 * 14 13 12 16 16 C 1.52994 * 109.47111 * 65.00048 * 14 13 12 17 17 C 1.53001 * 109.46695 * 185.00232 * 14 13 12 18 18 N 1.46504 * 109.46850 * 174.99822 * 17 14 13 19 19 C 1.36933 * 119.99960 * 179.97438 * 18 17 14 20 20 H 1.08008 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00121 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99967 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99797 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47226 * 89.99834 * 23 21 19 25 25 H 1.48503 * 109.46888 * 209.99756 * 23 21 19 26 26 H 1.48501 * 109.47227 * 329.99898 * 23 21 19 27 27 C 1.34649 * 119.47426 * 89.99704 * 5 4 2 28 28 O 1.21892 * 120.09790 * 359.97438 * 27 5 4 29 29 H 1.09003 * 109.47273 * 60.00292 * 1 2 3 30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47401 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47401 * 239.99813 * 2 1 3 33 33 H 1.08998 * 109.47043 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46772 * 300.00015 * 3 2 1 35 35 H 1.08996 * 109.47098 * 59.99628 * 3 2 1 36 36 H 1.09002 * 109.47005 * 305.00371 * 4 2 1 37 37 H 1.08999 * 109.47084 * 185.00164 * 4 2 1 38 38 H 1.07999 * 119.38581 * 359.97438 * 6 5 4 39 39 H 1.08004 * 119.93101 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.51823 * 180.29424 * 8 7 6 41 41 H 0.97001 * 119.99671 * 5.10556 * 12 10 9 42 42 H 1.08992 * 109.47193 * 299.99683 * 13 12 10 43 43 H 1.09002 * 109.47089 * 60.00650 * 13 12 10 44 44 H 1.09002 * 109.47094 * 59.99899 * 16 14 13 45 45 H 1.09003 * 109.46953 * 179.97438 * 16 14 13 46 46 H 1.08997 * 109.47145 * 299.99949 * 16 14 13 47 47 H 1.08992 * 109.47152 * 294.99878 * 17 14 13 48 48 H 1.08997 * 109.47253 * 55.00531 * 17 14 13 49 49 H 0.96996 * 120.00054 * 0.02562 * 18 17 14 50 50 H 0.96994 * 119.99801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 0.4684 -2.5213 1.7212 7 6 0.0741 -3.8199 1.6871 8 6 0.8911 -4.7844 1.0976 9 6 2.1105 -4.3920 0.5494 10 6 2.9997 -5.3793 -0.0815 11 8 2.7246 -6.5633 -0.0345 12 7 4.1195 -4.9721 -0.7115 13 6 4.9462 -5.9411 -1.4352 14 6 6.1475 -5.2242 -2.0549 15 1 5.7977 -4.4006 -2.6774 16 6 7.0446 -4.6775 -0.9426 17 6 6.9426 -6.2101 -2.9132 18 7 8.0226 -5.4982 -3.6010 19 6 8.8722 -6.1798 -4.4308 20 1 8.7459 -7.2423 -4.5785 21 6 9.8958 -5.5054 -5.0822 22 7 10.7122 -6.1605 -5.8802 23 14 10.1146 -3.6680 -4.8262 24 1 11.0264 -3.4333 -3.6778 25 1 10.6961 -3.0633 -6.0515 26 1 8.7953 -3.0467 -4.5457 27 6 2.4789 -3.0231 0.6098 28 8 3.5400 -2.6541 0.1370 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 -0.1736 -1.7844 2.1807 39 1 -0.8743 -4.1066 2.1169 40 1 0.5815 -5.8185 1.0628 41 1 4.3779 -4.0375 -0.6857 42 1 5.2969 -6.7074 -0.7440 43 1 4.3547 -6.4061 -2.2238 44 1 7.3944 -5.5011 -0.3201 45 1 7.9006 -4.1671 -1.3841 46 1 6.4781 -3.9751 -0.3312 47 1 7.3670 -6.9861 -2.2762 48 1 6.2812 -6.6661 -3.6498 49 1 8.1362 -4.5441 -3.4681 50 1 11.4276 -5.6893 -6.3350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753631829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:20 Heat of formation + Delta-G solvation = -35.744124 kcal Electronic energy + Delta-G solvation = -29092.176058 eV Core-core repulsion = 25120.005437 eV Total energy + Delta-G solvation = -3972.170621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08456 -39.44773 -37.64197 -37.04015 -36.57265 -34.24091 -33.81453 -32.29242 -30.74391 -30.24127 -27.91628 -27.52479 -26.71951 -25.83821 -24.32345 -23.27660 -21.95763 -21.04669 -20.69742 -20.01946 -18.33919 -17.90343 -17.53197 -17.18032 -16.48933 -16.22254 -15.67667 -15.35695 -15.28557 -14.93589 -14.51841 -14.48042 -14.06098 -14.03043 -13.61872 -13.60027 -13.12762 -13.02413 -12.90566 -12.78903 -12.60529 -12.50085 -12.38970 -12.29826 -12.05763 -11.90106 -11.58677 -11.35424 -11.31991 -10.93799 -10.67022 -10.49857 -10.46323 -10.42308 -10.31369 -10.05554 -9.85186 -9.50772 -8.83506 -8.81173 -8.45940 -7.14575 -5.69821 -3.04436 0.01206 1.34940 1.98486 2.59114 3.39306 3.42871 3.46108 3.49909 3.52304 3.92085 3.94801 4.13316 4.28947 4.36717 4.51461 4.61496 4.65727 4.72650 4.80536 4.95017 4.97033 5.08192 5.09751 5.17991 5.27448 5.28595 5.35612 5.44597 5.49025 5.53005 5.61409 5.63429 5.70083 5.70432 5.82587 5.92219 5.93709 6.06355 6.07909 6.32423 6.40828 6.43521 6.59763 6.71854 6.79227 6.90205 7.41560 7.86439 8.07618 8.44061 8.49668 9.29017 10.01492 10.22151 11.48849 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002570 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.519075 B =10890.222962 C =12602.081337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.090 3.910 5 N -0.487 5.487 6 C 0.159 3.841 7 C -0.241 4.241 8 C 0.058 3.942 9 C -0.271 4.271 10 C 0.572 3.428 11 O -0.555 6.555 12 N -0.712 5.712 13 C 0.125 3.875 14 C -0.113 4.113 15 H 0.074 0.926 16 C -0.143 4.143 17 C 0.165 3.835 18 N -0.755 5.755 19 C -0.240 4.240 20 H 0.091 0.909 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.529 3.471 28 O -0.538 6.538 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.415 0.585 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.031 0.969 48 H 0.029 0.971 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.887 15.502 21.183 39.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.195 5.195 6 C 0.029 3.971 7 C -0.264 4.264 8 C 0.034 3.966 9 C -0.279 4.279 10 C 0.358 3.642 11 O -0.435 6.435 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.132 4.132 15 H 0.093 0.907 16 C -0.200 4.200 17 C 0.038 3.962 18 N -0.400 5.400 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C 0.331 3.669 28 O -0.419 6.419 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.261 0.739 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.205 14.828 20.744 38.023 hybrid contribution 0.232 1.740 0.119 1.760 sum -27.973 16.568 20.863 38.630 Atomic orbital electron populations 1.21975 0.94710 1.01880 1.02605 1.21475 0.96401 0.97185 0.98172 1.21755 1.01754 0.94333 1.02378 1.22275 1.03805 0.77367 0.99646 1.45469 1.16670 1.10761 1.46589 1.22209 0.85990 0.97613 0.91281 1.20702 1.03851 0.91482 1.10361 1.22043 0.89536 1.00834 0.84157 1.21096 1.00181 0.93029 1.13555 1.17402 0.81102 0.87159 0.78491 1.90779 1.74558 1.16770 1.61441 1.46589 1.23993 1.14599 1.52086 1.21373 0.91282 0.91521 0.95698 1.21572 0.94787 0.99432 0.97445 0.90729 1.21795 0.99516 1.00867 0.97826 1.20560 0.89420 0.93068 0.93200 1.42706 1.34804 1.07193 1.55341 1.19087 1.05756 0.94437 1.17717 0.89164 1.24665 0.97943 0.97377 0.99355 1.69705 1.20097 1.34935 1.33698 0.86551 0.77651 0.87128 0.77287 1.21084 1.21764 1.20325 1.17046 0.84334 0.85939 0.79544 1.90655 1.22988 1.79403 1.48887 0.91810 0.92648 0.92266 0.89944 0.91908 0.91823 0.92341 0.88746 0.87528 0.81638 0.82808 0.83188 0.73873 0.91265 0.91419 0.92526 0.92065 0.93287 0.95097 0.95303 0.80622 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 8.63 37.16 0.32 -0.22 16 2 C -0.11 -0.58 3.13 -90.62 -0.28 -0.86 16 3 C -0.14 -0.62 9.19 37.16 0.34 -0.28 16 4 C 0.09 0.44 4.83 -4.04 -0.02 0.43 16 5 N -0.49 -3.24 2.46 -119.34 -0.29 -3.54 16 6 C 0.16 0.59 8.20 -16.85 -0.14 0.45 16 7 C -0.24 -1.05 9.99 -40.01 -0.40 -1.45 16 8 C 0.06 0.47 9.69 -38.71 -0.38 0.10 16 9 C -0.27 -3.20 5.92 -104.51 -0.62 -3.82 16 10 C 0.57 8.86 7.73 -12.67 -0.10 8.76 16 11 O -0.55 -9.92 16.41 5.24 0.09 -9.84 16 12 N -0.71 -11.11 5.20 -61.49 -0.32 -11.43 16 13 C 0.13 2.02 5.07 -4.04 -0.02 2.00 16 14 C -0.11 -1.95 2.46 -90.62 -0.22 -2.17 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.14 -2.36 8.94 37.15 0.33 -2.03 16 17 C 0.17 3.43 5.65 -4.04 -0.02 3.41 16 18 N -0.75 -18.93 5.13 -59.91 -0.31 -19.24 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.26 16 20 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -30.32 13.97 55.49 0.78 -29.54 16 23 Si 0.88 22.92 27.74 -169.99 -4.71 18.21 16 24 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 27 C 0.53 5.83 7.44 -14.92 -0.11 5.72 16 28 O -0.54 -7.37 13.26 5.02 0.07 -7.30 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.21 6.33 -51.93 -0.33 -0.12 16 31 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.09 0.18 8.00 -51.93 -0.42 -0.24 16 37 H 0.11 0.71 7.38 -51.93 -0.38 0.32 16 38 H 0.17 -0.05 7.87 -52.49 -0.41 -0.47 16 39 H 0.15 0.20 8.06 -52.48 -0.42 -0.22 16 40 H 0.15 1.17 7.71 -52.49 -0.40 0.77 16 41 H 0.42 6.43 4.26 -40.82 -0.17 6.26 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.09 7.18 -51.93 -0.37 0.72 16 46 H 0.05 0.74 7.18 -51.93 -0.37 0.37 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.36 8.83 4.71 -40.82 -0.19 8.64 16 50 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -37.58 400.50 -8.39 -45.96 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.14 Total: 7.96 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.57 Total: 2.72 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.15 Total: -63.75 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.15 Total: -17.14 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.58 -8.39 -45.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753631829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.218 kcal (2) G-P(sol) polarization free energy of solvation -37.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds