Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.53003 * 109.47115 * 119.99653 * 2 1 3 5 5 N 1.46503 * 109.47173 * 65.00272 * 4 2 1 6 6 C 1.35439 * 119.46743 * 270.02436 * 5 4 2 7 7 C 1.35758 * 121.22511 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.13467 * 359.95167 * 7 6 5 9 9 C 1.39337 * 118.95903 * 0.02728 * 8 7 6 10 10 C 1.47077 * 120.58598 * 180.02562 * 9 8 7 11 11 O 1.21646 * 120.00370 * 354.14679 * 10 9 8 12 12 N 1.34784 * 120.00017 * 174.15361 * 10 9 8 13 13 C 1.46496 * 119.99789 * 185.10229 * 12 10 9 14 14 C 1.53008 * 109.46611 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47224 * 305.00027 * 14 13 12 16 16 C 1.52994 * 109.47111 * 65.00048 * 14 13 12 17 17 C 1.53001 * 109.46695 * 185.00232 * 14 13 12 18 18 N 1.46504 * 109.46850 * 174.99822 * 17 14 13 19 19 C 1.36933 * 119.99960 * 179.97438 * 18 17 14 20 20 H 1.08008 * 119.99934 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00121 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99967 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99797 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47226 * 89.99834 * 23 21 19 25 25 H 1.48503 * 109.46888 * 209.99756 * 23 21 19 26 26 H 1.48501 * 109.47227 * 329.99898 * 23 21 19 27 27 C 1.34649 * 119.47426 * 89.99704 * 5 4 2 28 28 O 1.21892 * 120.09790 * 359.97438 * 27 5 4 29 29 H 1.09003 * 109.47273 * 60.00292 * 1 2 3 30 30 H 1.08999 * 109.46795 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47401 * 300.00186 * 1 2 3 32 32 H 1.08996 * 109.47401 * 239.99813 * 2 1 3 33 33 H 1.08998 * 109.47043 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46772 * 300.00015 * 3 2 1 35 35 H 1.08996 * 109.47098 * 59.99628 * 3 2 1 36 36 H 1.09002 * 109.47005 * 305.00371 * 4 2 1 37 37 H 1.08999 * 109.47084 * 185.00164 * 4 2 1 38 38 H 1.07999 * 119.38581 * 359.97438 * 6 5 4 39 39 H 1.08004 * 119.93101 * 179.97438 * 7 6 5 40 40 H 1.07998 * 120.51823 * 180.29424 * 8 7 6 41 41 H 0.97001 * 119.99671 * 5.10556 * 12 10 9 42 42 H 1.08992 * 109.47193 * 299.99683 * 13 12 10 43 43 H 1.09002 * 109.47089 * 60.00650 * 13 12 10 44 44 H 1.09002 * 109.47094 * 59.99899 * 16 14 13 45 45 H 1.09003 * 109.46953 * 179.97438 * 16 14 13 46 46 H 1.08997 * 109.47145 * 299.99949 * 16 14 13 47 47 H 1.08992 * 109.47152 * 294.99878 * 17 14 13 48 48 H 1.08997 * 109.47253 * 55.00531 * 17 14 13 49 49 H 0.96996 * 120.00054 * 0.02562 * 18 17 14 50 50 H 0.96994 * 119.99801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1907 6 6 0.4684 -2.5213 1.7212 7 6 0.0741 -3.8199 1.6871 8 6 0.8911 -4.7844 1.0976 9 6 2.1105 -4.3920 0.5494 10 6 2.9997 -5.3793 -0.0815 11 8 2.7246 -6.5633 -0.0345 12 7 4.1195 -4.9721 -0.7115 13 6 4.9462 -5.9411 -1.4352 14 6 6.1475 -5.2242 -2.0549 15 1 5.7977 -4.4006 -2.6774 16 6 7.0446 -4.6775 -0.9426 17 6 6.9426 -6.2101 -2.9132 18 7 8.0226 -5.4982 -3.6010 19 6 8.8722 -6.1798 -4.4308 20 1 8.7459 -7.2423 -4.5785 21 6 9.8958 -5.5054 -5.0822 22 7 10.7122 -6.1605 -5.8802 23 14 10.1146 -3.6680 -4.8262 24 1 11.0264 -3.4333 -3.6778 25 1 10.6961 -3.0633 -6.0515 26 1 8.7953 -3.0467 -4.5457 27 6 2.4789 -3.0231 0.6098 28 8 3.5400 -2.6541 0.1370 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 -0.1736 -1.7844 2.1807 39 1 -0.8743 -4.1066 2.1169 40 1 0.5815 -5.8185 1.0628 41 1 4.3779 -4.0375 -0.6857 42 1 5.2969 -6.7074 -0.7440 43 1 4.3547 -6.4061 -2.2238 44 1 7.3944 -5.5011 -0.3201 45 1 7.9006 -4.1671 -1.3841 46 1 6.4781 -3.9751 -0.3312 47 1 7.3670 -6.9861 -2.2762 48 1 6.2812 -6.6661 -3.6498 49 1 8.1362 -4.5441 -3.4681 50 1 11.4276 -5.6893 -6.3350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753631829.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = -62.023863 kcal Electronic energy + Delta-G solvation = -29093.315633 eV Core-core repulsion = 25120.005437 eV Total energy + Delta-G solvation = -3973.310196 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71312 -40.54681 -38.44705 -38.32315 -37.24291 -35.97188 -34.39964 -34.04505 -32.41896 -31.16264 -28.27526 -27.99362 -27.92438 -27.44078 -25.38330 -23.93408 -23.74110 -21.95956 -21.57293 -21.25524 -19.79645 -18.92981 -18.53832 -18.00400 -17.15952 -17.00441 -16.88996 -16.49537 -16.44996 -15.81211 -15.72205 -15.53843 -15.40102 -15.14955 -14.86101 -14.83213 -14.26172 -13.91019 -13.85602 -13.71620 -13.54739 -13.41948 -13.25000 -13.16805 -13.07539 -12.90375 -12.76781 -12.31729 -12.29206 -12.13011 -12.04766 -11.93898 -11.81307 -11.75446 -11.70835 -11.24960 -11.02637 -11.01560 -10.96649 -10.05981 -9.33532 -9.10317 -8.05286 -5.39231 -0.57593 0.77170 1.35003 1.38568 1.45097 1.45906 1.70959 2.33024 2.45816 2.69512 3.25486 3.45230 3.50687 3.68757 3.76624 3.83741 3.85969 3.87037 3.94319 4.00951 4.06730 4.12895 4.21621 4.35519 4.45692 4.59306 4.63054 4.66887 4.67763 4.77774 4.82115 4.85656 4.93115 4.93761 4.98309 4.98996 5.03334 5.20010 5.22129 5.22810 5.31715 5.35598 5.36518 5.46210 5.54945 5.72389 5.88739 6.18563 6.55256 6.85524 7.04107 7.29817 7.79231 8.00273 9.16338 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.002570 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.519075 B =10890.222962 C =12602.081337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.088 3.912 5 N -0.481 5.481 6 C 0.186 3.814 7 C -0.240 4.240 8 C 0.076 3.924 9 C -0.328 4.328 10 C 0.565 3.435 11 O -0.593 6.593 12 N -0.715 5.715 13 C 0.133 3.867 14 C -0.097 4.097 15 H 0.074 0.926 16 C -0.137 4.137 17 C 0.163 3.837 18 N -0.755 5.755 19 C -0.237 4.237 20 H 0.057 0.943 21 C -0.064 4.064 22 N -0.983 5.983 23 Si 0.955 3.045 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.255 1.255 27 C 0.521 3.479 28 O -0.580 6.580 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.225 0.775 39 H 0.197 0.803 40 H 0.148 0.852 41 H 0.416 0.584 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.366 0.634 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.528 18.942 24.356 44.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.200 4.200 4 C -0.032 4.032 5 N -0.187 5.187 6 C 0.056 3.944 7 C -0.262 4.262 8 C 0.052 3.948 9 C -0.335 4.335 10 C 0.355 3.645 11 O -0.477 6.477 12 N -0.376 5.376 13 C 0.008 3.992 14 C -0.117 4.117 15 H 0.093 0.907 16 C -0.194 4.194 17 C 0.036 3.964 18 N -0.401 5.401 19 C -0.368 4.368 20 H 0.075 0.925 21 C -0.255 4.255 22 N -0.633 5.633 23 Si 0.782 3.218 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.180 1.180 27 C 0.325 3.675 28 O -0.466 6.466 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.160 0.840 37 H 0.102 0.898 38 H 0.241 0.759 39 H 0.214 0.786 40 H 0.166 0.834 41 H 0.263 0.737 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.048 0.952 48 H 0.044 0.956 49 H 0.200 0.800 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -31.905 18.298 23.959 43.896 hybrid contribution 1.172 0.646 -0.783 1.551 sum -30.733 18.944 23.176 42.901 Atomic orbital electron populations 1.21969 0.92840 1.02198 1.03811 1.21412 0.97871 0.97090 0.96645 1.21741 1.00857 0.94054 1.03365 1.22482 1.03073 0.76311 1.01361 1.45528 1.16976 1.10928 1.45223 1.23230 0.84430 0.98765 0.88021 1.21175 1.04646 0.90822 1.09519 1.22312 0.88361 1.01885 0.82240 1.20793 1.01731 0.92932 1.18013 1.18035 0.81061 0.87576 0.77842 1.90729 1.75438 1.18421 1.63154 1.46619 1.24329 1.14344 1.52281 1.21163 0.90940 0.91547 0.95512 1.21363 0.94755 0.98398 0.97141 0.90716 1.21739 0.99039 1.01109 0.97561 1.20672 0.88628 0.93750 0.93309 1.42667 1.35050 1.07456 1.54940 1.19054 1.06386 0.93366 1.17987 0.92537 1.25519 0.97761 1.02858 0.99367 1.69885 1.21037 1.37224 1.35186 0.85404 0.78617 0.80528 0.77251 1.20103 1.21797 1.17963 1.16991 0.84443 0.86252 0.79798 1.90597 1.24899 1.79954 1.51116 0.92578 0.92647 0.89196 0.93947 0.93395 0.92217 0.89930 0.84043 0.89797 0.75867 0.78573 0.83418 0.73727 0.91718 0.92019 0.92294 0.92995 0.91939 0.95175 0.95551 0.79991 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 8.63 71.98 0.62 0.15 16 2 C -0.11 -0.91 3.13 -10.79 -0.03 -0.95 16 3 C -0.14 -0.97 9.19 71.98 0.66 -0.30 16 4 C 0.09 0.61 4.83 86.38 0.42 1.02 16 5 N -0.48 -5.05 2.46 -649.68 -1.60 -6.65 16 6 C 0.19 0.36 8.20 83.56 0.69 1.04 16 7 C -0.24 -0.97 9.99 21.99 0.22 -0.75 16 8 C 0.08 1.12 9.69 22.83 0.22 1.34 16 9 C -0.33 -7.80 5.92 -19.79 -0.12 -7.92 16 10 C 0.57 18.41 7.73 86.56 0.67 19.08 16 11 O -0.59 -22.37 16.41 -4.18 -0.07 -22.43 16 12 N -0.71 -23.40 5.20 -466.70 -2.42 -25.82 16 13 C 0.13 4.48 5.07 86.38 0.44 4.92 16 14 C -0.10 -3.41 2.46 -10.79 -0.03 -3.44 16 15 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 16 C -0.14 -4.53 8.94 71.98 0.64 -3.89 16 17 C 0.16 6.93 5.65 86.38 0.49 7.41 16 18 N -0.75 -38.17 5.13 -343.45 -1.76 -39.93 16 19 C -0.24 -14.38 10.47 84.03 0.88 -13.50 16 20 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 21 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.98 -65.32 13.97 21.65 0.30 -65.01 16 23 Si 0.96 47.58 27.74 68.60 1.90 49.48 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.25 -11.65 6.52 99.48 0.65 -11.00 16 27 C 0.52 11.37 7.44 85.17 0.63 12.01 16 28 O -0.58 -16.58 13.26 -4.97 -0.07 -16.65 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.17 6.33 -2.39 -0.02 0.16 16 31 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.14 -0.32 8.00 -2.39 -0.02 -0.34 16 37 H 0.08 1.03 7.38 -2.39 -0.02 1.02 16 38 H 0.22 -2.07 7.87 -2.91 -0.02 -2.10 16 39 H 0.20 -0.79 8.06 -2.91 -0.02 -0.81 16 40 H 0.15 2.19 7.71 -2.91 -0.02 2.17 16 41 H 0.42 13.51 4.26 -92.76 -0.40 13.11 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.81 7.18 -2.39 -0.02 1.79 16 46 H 0.06 1.90 7.18 -2.39 -0.02 1.88 16 47 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.37 17.65 4.71 -92.71 -0.44 17.21 16 50 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 Total: -1.00 -88.54 400.50 3.20 -85.34 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.05 Total: 28.90 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 6.87 Total: 12.77 kcal Atomic # 7 Polarization: -131.93 SS G_CDS: -5.49 Total: -137.41 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.13 Total: -39.08 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.90 Total: 49.48 kcal Total: -88.54 3.20 -85.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753631829.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.321 kcal (2) G-P(sol) polarization free energy of solvation -88.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds