Wall clock time and date at job start Tue Mar 31 2020 19:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46971 * 119.99852 * 2 1 3 5 5 H 1.09004 * 109.46901 * 185.00068 * 4 2 1 6 6 C 1.52993 * 109.47133 * 65.00129 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21273 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00160 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47115 * 305.00072 * 10 8 7 12 12 C 1.53003 * 109.47069 * 64.99821 * 10 8 7 13 13 O 1.42899 * 109.47183 * 184.99642 * 10 8 7 14 14 C 1.42902 * 113.99894 * 149.99766 * 13 10 8 15 15 C 1.50695 * 109.47085 * 180.02562 * 14 13 10 16 16 C 1.38650 * 120.78681 * 269.72313 * 15 14 13 17 17 C 1.38208 * 119.15911 * 179.79712 * 16 15 14 18 18 N 1.31867 * 120.76348 * 0.48704 * 17 16 15 19 19 C 1.31874 * 121.72849 * 359.73976 * 18 17 16 20 20 C 1.38203 * 120.76112 * 0.02562 * 19 18 17 21 21 N 1.46493 * 109.46887 * 304.99751 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09000 * 109.47421 * 300.00507 * 1 2 3 31 31 H 1.09007 * 109.47483 * 60.00102 * 1 2 3 32 32 H 1.09002 * 109.47675 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47421 * 239.99493 * 2 1 3 34 34 H 1.09000 * 109.47269 * 59.99400 * 3 2 1 35 35 H 1.08991 * 109.47041 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46608 * 299.99433 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47004 * 180.02562 * 12 10 8 41 41 H 1.09003 * 109.46856 * 300.00265 * 12 10 8 42 42 H 1.09003 * 109.46886 * 59.99690 * 12 10 8 43 43 H 1.08999 * 109.46972 * 300.00646 * 14 13 10 44 44 H 1.08999 * 109.46576 * 60.00426 * 14 13 10 45 45 H 1.07995 * 120.42260 * 0.02562 * 16 15 14 46 46 H 1.08004 * 119.61824 * 180.20522 * 17 16 15 47 47 H 1.07998 * 119.61662 * 180.02562 * 19 18 17 48 48 H 1.07994 * 120.41620 * 179.97438 * 20 19 18 49 49 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 50 50 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0182 -2.8593 2.4365 8 6 1.7595 -4.1707 2.6094 9 8 1.2091 -4.8009 1.7315 10 6 2.1540 -4.8537 3.8935 11 1 3.2183 -4.7020 4.0736 12 6 1.3511 -4.2618 5.0536 13 8 1.8828 -6.2530 3.7916 14 6 2.7624 -7.0733 4.5633 15 6 2.3875 -8.5215 4.3815 16 6 1.4720 -9.1291 5.2272 17 6 1.1495 -10.4580 5.0273 18 7 1.7083 -11.1485 4.0527 19 6 2.5861 -10.6047 3.2324 20 6 2.9540 -9.2795 3.3682 21 7 1.4558 -0.1036 2.4423 22 6 2.0441 1.0003 2.9997 23 1 2.9385 1.4158 2.5595 24 6 1.4908 1.5852 4.1304 25 7 2.0594 2.6430 4.6693 26 14 -0.0558 0.8662 4.8923 27 1 -1.2502 1.5081 4.2869 28 1 -0.0982 -0.5965 4.6394 29 1 -0.0485 1.1154 6.3562 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 0.5561 -2.2706 1.0528 38 1 2.1407 -2.6766 0.3507 39 1 2.4587 -2.3553 3.1385 40 1 1.6368 -4.7555 5.9824 41 1 1.5579 -3.1944 5.1313 42 1 0.2868 -4.4134 4.8735 43 1 3.7887 -6.9193 4.2299 44 1 2.6784 -6.8053 5.6165 45 1 1.0140 -8.5700 6.0297 46 1 0.4348 -10.9378 5.6796 47 1 3.0225 -11.2019 2.4455 48 1 3.6737 -8.8400 2.6936 49 1 0.6523 -0.4765 2.8376 50 1 1.6750 3.0493 5.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:40 Heat of formation + Delta-G solvation = -40.465957 kcal Electronic energy + Delta-G solvation = -29023.290479 eV Core-core repulsion = 25050.915103 eV Total energy + Delta-G solvation = -3972.375375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50990 -39.85933 -38.09996 -37.23216 -34.08538 -33.69636 -32.96382 -31.51813 -31.46074 -30.61729 -28.15594 -27.18280 -26.51871 -24.58762 -23.77184 -23.23417 -22.31597 -21.92554 -20.24990 -19.00105 -18.02554 -17.50602 -17.14243 -16.78166 -16.53670 -15.91078 -15.71682 -15.37706 -15.16833 -14.52412 -14.36812 -14.29392 -14.07503 -13.93508 -13.60497 -13.48705 -13.14985 -12.91743 -12.88203 -12.63208 -12.47710 -12.24168 -12.06794 -11.83347 -11.45896 -11.39189 -11.25778 -11.12713 -10.92085 -10.61852 -10.40740 -10.19940 -10.14339 -10.03945 -9.99678 -9.79629 -9.51628 -9.45427 -9.43231 -9.01349 -8.79787 -7.39572 -5.87604 -3.23489 0.81927 0.84104 2.73103 2.88768 3.26370 3.31628 3.38024 3.50525 3.86984 4.16678 4.36303 4.40015 4.48222 4.67373 4.73498 4.79985 4.82930 4.89231 5.00361 5.04180 5.15543 5.22157 5.30624 5.36702 5.47390 5.49823 5.54273 5.59981 5.63915 5.70295 5.71760 5.96433 5.97930 6.00681 6.02349 6.25463 6.27839 6.37415 6.46097 6.52496 6.59007 6.67311 6.73279 6.83127 6.91688 7.27993 7.65496 7.73511 7.88467 8.30598 8.38938 9.08699 9.80935 10.00635 11.30032 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.002497 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.918322 B =11210.004897 C =12307.463831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.173 3.827 5 H 0.063 0.937 6 C 0.111 3.889 7 N -0.713 5.713 8 C 0.511 3.489 9 O -0.531 6.531 10 C 0.072 3.928 11 H 0.088 0.912 12 C -0.173 4.173 13 O -0.349 6.349 14 C 0.097 3.903 15 C -0.042 4.042 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.484 5.484 19 C 0.095 3.905 20 C -0.149 4.149 21 N -0.743 5.743 22 C -0.240 4.240 23 H 0.095 0.905 24 C 0.008 3.992 25 N -0.930 5.930 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.277 1.277 29 H -0.292 1.292 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.137 0.863 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.137 0.863 49 H 0.362 0.638 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -19.506 -0.358 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.063 3.937 5 H 0.081 0.919 6 C -0.013 4.013 7 N -0.367 5.367 8 C 0.295 3.705 9 O -0.407 6.407 10 C 0.010 3.990 11 H 0.106 0.894 12 C -0.231 4.231 13 O -0.267 6.267 14 C 0.020 3.980 15 C -0.050 4.050 16 C -0.171 4.171 17 C -0.062 4.062 18 N -0.193 5.193 19 C -0.061 4.061 20 C -0.169 4.169 21 N -0.387 5.387 22 C -0.370 4.370 23 H 0.112 0.888 24 C -0.188 4.188 25 N -0.578 5.578 26 Si 0.708 3.292 27 H -0.212 1.212 28 H -0.203 1.203 29 H -0.219 1.219 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.154 0.846 46 H 0.174 0.826 47 H 0.175 0.825 48 H 0.155 0.845 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.003 -20.703 -1.149 20.831 hybrid contribution -0.567 0.984 1.225 1.670 sum 1.436 -19.719 0.076 19.772 Atomic orbital electron populations 1.21789 0.95946 1.00557 1.01657 1.21586 0.95925 0.97530 0.97746 1.21847 0.99868 0.95879 1.02353 1.20531 0.97392 0.88009 0.87727 0.91932 1.21800 1.00658 0.93410 0.85476 1.45941 1.61406 1.09010 1.20340 1.20240 0.79639 0.82418 0.88177 1.90697 1.41569 1.64813 1.43595 1.21938 1.00384 0.82472 0.94178 0.89437 1.22263 1.01743 1.02112 0.96976 1.88116 1.55008 1.14790 1.68819 1.21420 0.93678 0.86763 0.96114 1.19980 0.95596 0.94639 0.94808 1.22101 0.97751 0.96562 1.00716 1.22775 0.97385 0.91233 0.94812 1.67667 1.08254 1.39268 1.04109 1.22781 0.93617 0.92739 0.96991 1.22116 1.01320 0.95523 0.97965 1.42804 1.31507 1.34232 1.30115 1.19044 1.08431 1.02414 1.07120 0.88752 1.24647 0.98387 0.97575 0.98216 1.69689 1.41326 1.23006 1.23763 0.86674 0.84821 0.78768 0.78919 1.21191 1.20317 1.21900 0.91623 0.93972 0.93727 0.92872 0.89255 0.93903 0.94819 0.91434 0.91486 0.75426 0.91304 0.90098 0.91092 0.91696 0.91619 0.84560 0.82562 0.82525 0.84525 0.80477 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.74 37.15 0.32 -1.91 16 2 C -0.11 -1.68 2.74 -90.62 -0.25 -1.93 16 3 C -0.14 -2.45 8.46 37.16 0.31 -2.13 16 4 C 0.17 2.89 2.28 -67.93 -0.16 2.73 16 5 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 6 C 0.11 1.70 5.10 -4.05 -0.02 1.68 16 7 N -0.71 -10.58 5.35 -60.30 -0.32 -10.91 16 8 C 0.51 7.94 7.18 -10.98 -0.08 7.86 16 9 O -0.53 -10.30 16.51 -14.30 -0.24 -10.53 16 10 C 0.07 0.87 3.13 -27.88 -0.09 0.78 16 11 H 0.09 0.83 7.79 -51.93 -0.40 0.42 16 12 C -0.17 -1.95 9.48 37.16 0.35 -1.60 16 13 O -0.35 -4.58 9.51 -55.09 -0.52 -5.10 16 14 C 0.10 0.90 5.92 36.00 0.21 1.11 16 15 C -0.04 -0.41 5.55 -104.32 -0.58 -0.99 16 16 C -0.15 -1.37 9.82 -39.44 -0.39 -1.75 16 17 C 0.09 0.87 11.18 -17.55 -0.20 0.68 16 18 N -0.48 -5.20 10.36 -13.25 -0.14 -5.34 16 19 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 20 C -0.15 -1.40 9.82 -39.44 -0.39 -1.78 16 21 N -0.74 -14.86 3.33 -53.43 -0.18 -15.04 16 22 C -0.24 -5.84 8.24 -15.06 -0.12 -5.97 16 23 H 0.09 2.49 7.55 -52.49 -0.40 2.10 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -27.05 13.97 55.49 0.78 -26.28 16 26 Si 0.88 20.40 27.74 -169.99 -4.72 15.68 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -5.96 6.51 56.52 0.37 -5.59 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H 0.06 1.18 7.47 -51.93 -0.39 0.79 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.66 6.46 -51.93 -0.34 0.32 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.10 6.35 -51.92 -0.33 0.78 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.41 5.87 7.92 -40.82 -0.32 5.55 16 40 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 41 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 44 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 45 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 47 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 49 H 0.36 7.43 5.65 -40.82 -0.23 7.20 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 406.14 15.07 6.12 6.12 Total: -1.00 -32.18 406.14 -8.75 -40.93 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -8.18 Total: 12.88 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.35 Total: -2.41 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.14 Total: -57.56 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.76 Total: -15.64 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.72 Total: 15.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.18 -8.75 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.462 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds