Wall clock time and date at job start Tue Mar 31 2020 19:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47356 * 2 1 4 4 C 1.53006 * 109.46971 * 119.99852 * 2 1 3 5 5 H 1.09004 * 109.46901 * 185.00068 * 4 2 1 6 6 C 1.52993 * 109.47133 * 65.00129 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21273 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.00160 * 179.97438 * 8 7 6 11 11 H 1.08997 * 109.47115 * 305.00072 * 10 8 7 12 12 C 1.53003 * 109.47069 * 64.99821 * 10 8 7 13 13 O 1.42899 * 109.47183 * 184.99642 * 10 8 7 14 14 C 1.42902 * 113.99894 * 149.99766 * 13 10 8 15 15 C 1.50695 * 109.47085 * 180.02562 * 14 13 10 16 16 C 1.38650 * 120.78681 * 269.72313 * 15 14 13 17 17 C 1.38208 * 119.15911 * 179.79712 * 16 15 14 18 18 N 1.31867 * 120.76348 * 0.48704 * 17 16 15 19 19 C 1.31874 * 121.72849 * 359.73976 * 18 17 16 20 20 C 1.38203 * 120.76112 * 0.02562 * 19 18 17 21 21 N 1.46493 * 109.46887 * 304.99751 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09000 * 109.47421 * 300.00507 * 1 2 3 31 31 H 1.09007 * 109.47483 * 60.00102 * 1 2 3 32 32 H 1.09002 * 109.47675 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47421 * 239.99493 * 2 1 3 34 34 H 1.09000 * 109.47269 * 59.99400 * 3 2 1 35 35 H 1.08991 * 109.47041 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46608 * 299.99433 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.08999 * 109.47004 * 180.02562 * 12 10 8 41 41 H 1.09003 * 109.46856 * 300.00265 * 12 10 8 42 42 H 1.09003 * 109.46886 * 59.99690 * 12 10 8 43 43 H 1.08999 * 109.46972 * 300.00646 * 14 13 10 44 44 H 1.08999 * 109.46576 * 60.00426 * 14 13 10 45 45 H 1.07995 * 120.42260 * 0.02562 * 16 15 14 46 46 H 1.08004 * 119.61824 * 180.20522 * 17 16 15 47 47 H 1.07998 * 119.61662 * 180.02562 * 19 18 17 48 48 H 1.07994 * 120.41620 * 179.97438 * 20 19 18 49 49 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 50 50 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0182 -2.8593 2.4365 8 6 1.7595 -4.1707 2.6094 9 8 1.2091 -4.8009 1.7315 10 6 2.1540 -4.8537 3.8935 11 1 3.2183 -4.7020 4.0736 12 6 1.3511 -4.2618 5.0536 13 8 1.8828 -6.2530 3.7916 14 6 2.7624 -7.0733 4.5633 15 6 2.3875 -8.5215 4.3815 16 6 1.4720 -9.1291 5.2272 17 6 1.1495 -10.4580 5.0273 18 7 1.7083 -11.1485 4.0527 19 6 2.5861 -10.6047 3.2324 20 6 2.9540 -9.2795 3.3682 21 7 1.4558 -0.1036 2.4423 22 6 2.0441 1.0003 2.9997 23 1 2.9385 1.4158 2.5595 24 6 1.4908 1.5852 4.1304 25 7 2.0594 2.6430 4.6693 26 14 -0.0558 0.8662 4.8923 27 1 -1.2502 1.5081 4.2869 28 1 -0.0982 -0.5965 4.6394 29 1 -0.0485 1.1154 6.3562 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 0.5561 -2.2706 1.0528 38 1 2.1407 -2.6766 0.3507 39 1 2.4587 -2.3553 3.1385 40 1 1.6368 -4.7555 5.9824 41 1 1.5579 -3.1944 5.1313 42 1 0.2868 -4.4134 4.8735 43 1 3.7887 -6.9193 4.2299 44 1 2.6784 -6.8053 5.6165 45 1 1.0140 -8.5700 6.0297 46 1 0.4348 -10.9378 5.6796 47 1 3.0225 -11.2019 2.4455 48 1 3.6737 -8.8400 2.6936 49 1 0.6523 -0.4765 2.8376 50 1 1.6750 3.0493 5.4618 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:39 Heat of formation + Delta-G solvation = -61.089018 kcal Electronic energy + Delta-G solvation = -29024.184762 eV Core-core repulsion = 25050.915103 eV Total energy + Delta-G solvation = -3973.269658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26977 -40.93098 -39.25205 -38.45872 -35.38900 -34.75389 -34.43860 -32.63134 -32.17161 -32.14831 -29.54232 -27.89684 -27.86012 -25.83947 -24.77667 -24.42754 -23.33751 -22.95985 -21.43935 -20.45847 -19.63616 -18.51850 -18.19436 -17.52239 -17.41167 -16.97900 -16.69649 -16.53585 -16.25142 -16.01415 -15.62185 -15.47800 -15.09187 -14.80763 -14.64553 -14.58123 -14.52676 -14.32553 -14.12073 -13.77449 -13.46319 -13.36275 -13.03255 -12.95919 -12.83820 -12.78759 -12.52542 -12.45878 -12.32937 -12.09753 -12.01952 -11.79571 -11.39386 -11.24684 -11.11677 -10.89825 -10.77082 -10.51015 -10.48514 -10.10462 -10.05123 -9.23890 -7.91734 -5.23066 0.11960 0.18293 1.40244 1.44369 1.50251 1.55757 1.89881 2.54629 2.70142 3.07552 3.40318 3.55033 3.57993 3.66457 3.74588 3.77369 3.88754 3.92826 4.03060 4.10381 4.18745 4.25290 4.29686 4.37941 4.41267 4.41979 4.63617 4.64354 4.67997 4.71283 4.77285 4.87156 4.95083 4.95605 4.97173 5.10586 5.14923 5.21185 5.27048 5.31510 5.33267 5.49551 5.57889 5.73735 5.79095 5.92133 5.97281 6.30640 6.55912 6.98307 7.16883 7.20633 7.91593 8.10595 9.29384 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.002497 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.918322 B =11210.004897 C =12307.463831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.118 3.882 7 N -0.710 5.710 8 C 0.508 3.492 9 O -0.574 6.574 10 C 0.076 3.924 11 H 0.119 0.881 12 C -0.170 4.170 13 O -0.377 6.377 14 C 0.093 3.907 15 C -0.059 4.059 16 C -0.156 4.156 17 C 0.084 3.916 18 N -0.510 5.510 19 C 0.084 3.916 20 C -0.158 4.158 21 N -0.740 5.740 22 C -0.198 4.198 23 H 0.069 0.931 24 C -0.058 4.058 25 N -0.984 5.984 26 Si 0.935 3.065 27 H -0.295 1.295 28 H -0.248 1.248 29 H -0.304 1.304 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.413 0.587 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.155 0.845 46 H 0.179 0.821 47 H 0.177 0.823 48 H 0.149 0.851 49 H 0.363 0.637 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -21.329 -0.707 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.066 3.934 5 H 0.080 0.920 6 C -0.006 4.006 7 N -0.363 5.363 8 C 0.294 3.706 9 O -0.453 6.453 10 C 0.015 3.985 11 H 0.137 0.863 12 C -0.227 4.227 13 O -0.296 6.296 14 C 0.018 3.982 15 C -0.067 4.067 16 C -0.176 4.176 17 C -0.072 4.072 18 N -0.220 5.220 19 C -0.072 4.072 20 C -0.178 4.178 21 N -0.383 5.383 22 C -0.329 4.329 23 H 0.087 0.913 24 C -0.250 4.250 25 N -0.635 5.635 26 Si 0.765 3.235 27 H -0.223 1.223 28 H -0.173 1.173 29 H -0.232 1.232 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.173 0.827 46 H 0.196 0.804 47 H 0.194 0.806 48 H 0.167 0.833 49 H 0.196 0.804 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.080 -22.572 -1.528 22.720 hybrid contribution -0.523 1.515 1.197 2.001 sum 1.557 -21.057 -0.331 21.117 Atomic orbital electron populations 1.21746 0.95645 1.01121 1.01095 1.21559 0.96118 0.96591 0.98234 1.21750 0.99847 0.96670 1.01179 1.20658 0.97145 0.88849 0.86723 0.91984 1.21679 1.00384 0.92185 0.86360 1.45934 1.61054 1.09090 1.20185 1.20898 0.78550 0.82202 0.88907 1.90675 1.43586 1.65660 1.45363 1.21945 1.02153 0.82150 0.92204 0.86347 1.22250 1.00573 1.02087 0.97816 1.88079 1.56373 1.15234 1.69881 1.21631 0.93812 0.85814 0.96966 1.20245 0.96062 0.95200 0.95228 1.22360 0.97475 0.96649 1.01067 1.23204 0.97608 0.91618 0.94802 1.67692 1.09120 1.40183 1.04997 1.23164 0.93488 0.93222 0.97334 1.22344 1.01636 0.95633 0.98204 1.42747 1.31347 1.33113 1.31085 1.18932 1.06483 1.02037 1.05414 0.91267 1.25233 1.01554 0.98511 0.99653 1.69849 1.43517 1.25409 1.24748 0.85708 0.81015 0.79624 0.77116 1.22270 1.17277 1.23150 0.94279 0.92476 0.92588 0.89933 0.93314 0.93865 0.93041 0.92069 0.90190 0.74996 0.88590 0.90491 0.92783 0.90135 0.89446 0.82712 0.80430 0.80596 0.83288 0.80404 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 8.74 71.98 0.63 -3.43 16 2 C -0.10 -3.04 2.74 -10.79 -0.03 -3.07 16 3 C -0.14 -4.55 8.46 71.98 0.61 -3.94 16 4 C 0.17 5.48 2.28 44.99 0.10 5.58 16 5 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 6 C 0.12 3.36 5.10 86.38 0.44 3.80 16 7 N -0.71 -19.50 5.35 -463.07 -2.48 -21.98 16 8 C 0.51 14.82 7.18 87.66 0.63 15.45 16 9 O -0.57 -21.56 16.51 15.98 0.26 -21.30 16 10 C 0.08 1.65 3.13 29.85 0.09 1.75 16 11 H 0.12 1.81 7.79 -2.39 -0.02 1.79 16 12 C -0.17 -3.35 9.48 71.98 0.68 -2.66 16 13 O -0.38 -9.05 9.51 -129.99 -1.24 -10.28 16 14 C 0.09 1.49 5.92 71.23 0.42 1.91 16 15 C -0.06 -1.06 5.55 -19.67 -0.11 -1.17 16 16 C -0.16 -2.54 9.82 22.36 0.22 -2.32 16 17 C 0.08 1.44 11.18 84.68 0.95 2.39 16 18 N -0.51 -10.55 10.36 -195.84 -2.03 -12.58 16 19 C 0.08 1.50 11.18 84.68 0.95 2.45 16 20 C -0.16 -2.76 9.82 22.36 0.22 -2.54 16 21 N -0.74 -28.66 3.33 -322.95 -1.08 -29.74 16 22 C -0.20 -9.62 8.24 84.03 0.69 -8.93 16 23 H 0.07 3.72 7.55 -2.91 -0.02 3.70 16 24 C -0.06 -3.12 5.50 84.86 0.47 -2.65 16 25 N -0.98 -58.83 13.97 21.65 0.30 -58.53 16 26 Si 0.94 42.30 27.74 68.60 1.90 44.20 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.25 -9.86 6.51 99.48 0.65 -9.21 16 29 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 30 H 0.04 1.34 7.47 -2.39 -0.02 1.33 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.51 6.46 -2.39 -0.02 1.49 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 35 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.86 6.35 -2.38 -0.02 1.84 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.41 10.87 7.92 -92.71 -0.73 10.14 16 40 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 41 H 0.08 1.58 7.93 -2.39 -0.02 1.56 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.00 8.04 -2.39 -0.02 0.98 16 44 H 0.09 0.98 7.83 -2.39 -0.02 0.97 16 45 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 46 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 48 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 49 H 0.36 14.23 5.65 -92.71 -0.52 13.70 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.28 406.14 2.24 -69.05 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.38 Total: 38.57 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 6.96 Total: 2.60 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -5.28 Total: -122.83 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.97 Total: -31.58 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.90 Total: 44.20 kcal Total: -71.28 2.24 -69.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.956 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds