Wall clock time and date at job start Tue Mar 31 2020 19:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 H 1.08991 * 109.47391 * 304.99872 * 10 8 7 12 12 C 1.53004 * 109.47129 * 64.99594 * 10 8 7 13 13 O 1.42895 * 109.47236 * 184.99284 * 10 8 7 14 14 C 1.42907 * 114.00022 * 149.99902 * 13 10 8 15 15 C 1.50703 * 109.47014 * 180.02562 * 14 13 10 16 16 C 1.38651 * 120.78709 * 269.71662 * 15 14 13 17 17 C 1.38204 * 119.15884 * 179.79657 * 16 15 14 18 18 N 1.31875 * 120.76585 * 0.49397 * 17 16 15 19 19 C 1.31871 * 121.72050 * 359.73882 * 18 17 16 20 20 C 1.38196 * 120.77034 * 0.02562 * 19 18 17 21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 37 37 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 38 38 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 39 39 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 40 40 H 1.08996 * 109.47248 * 180.02562 * 12 10 8 41 41 H 1.09000 * 109.47173 * 300.00101 * 12 10 8 42 42 H 1.09004 * 109.46910 * 59.99691 * 12 10 8 43 43 H 1.08997 * 109.47034 * 300.00370 * 14 13 10 44 44 H 1.08993 * 109.46548 * 60.00372 * 14 13 10 45 45 H 1.08000 * 120.41974 * 0.02562 * 16 15 14 46 46 H 1.08001 * 119.61699 * 180.20864 * 17 16 15 47 47 H 1.08002 * 119.61122 * 180.02562 * 19 18 17 48 48 H 1.07993 * 120.42394 * 180.02562 * 20 19 18 49 49 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 1 3.4936 -4.8531 3.7042 12 6 1.9025 -4.3228 5.0562 13 8 2.0243 -6.3053 3.6795 14 6 2.9844 -7.2036 4.2394 15 6 2.4804 -8.6184 4.1158 16 6 1.7182 -9.1908 5.1227 17 6 1.2699 -10.4894 4.9724 18 7 1.5675 -11.1851 3.8923 19 6 2.2938 -10.6746 2.9171 20 6 2.7730 -9.3807 2.9952 21 7 3.5050 -0.7218 1.2490 22 6 4.1901 0.3552 1.7447 23 1 3.6505 1.2032 2.1400 24 6 5.5782 0.3572 1.7392 25 7 6.2359 -0.6760 1.2570 26 14 6.5129 1.8261 2.4161 27 1 5.5484 2.8484 2.8953 28 1 7.3718 1.3886 3.5458 29 1 7.3616 2.4088 1.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 0.4436 -2.1650 1.3388 38 1 1.8183 -2.6511 0.3179 39 1 2.7231 -2.4351 2.9844 40 1 2.3378 -4.8616 5.8977 41 1 2.1945 -3.2739 5.1067 42 1 0.8160 -4.3998 5.0976 43 1 3.9286 -7.1064 3.7035 44 1 3.1372 -6.9625 5.2913 45 1 1.4747 -8.6276 6.0115 46 1 0.6728 -10.9414 5.7506 47 1 2.5169 -11.2749 2.0474 48 1 3.3669 -8.9682 2.1932 49 1 3.9897 -1.4834 0.8939 50 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:43 Heat of formation + Delta-G solvation = -46.399716 kcal Electronic energy + Delta-G solvation = -28792.545182 eV Core-core repulsion = 24819.912500 eV Total energy + Delta-G solvation = -3972.632682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43187 -39.73048 -37.95054 -37.04281 -33.95085 -33.61104 -33.17122 -31.44893 -31.39197 -30.31046 -27.98769 -27.10091 -26.15375 -24.54086 -23.70224 -23.38672 -22.23213 -21.75937 -20.15808 -19.30683 -17.71583 -17.35550 -16.98694 -16.70212 -16.43754 -15.82559 -15.60462 -15.23187 -15.11163 -14.58313 -14.21135 -14.01446 -13.98651 -13.85854 -13.50442 -13.39703 -13.32906 -12.89613 -12.77599 -12.55087 -12.20086 -12.08967 -12.04678 -11.76197 -11.65439 -11.37961 -11.08924 -11.00852 -10.87777 -10.67374 -10.32997 -10.13149 -10.10455 -9.98997 -9.95423 -9.72983 -9.60123 -9.37948 -9.32401 -8.97633 -8.65192 -7.09069 -5.88368 -3.17514 0.89241 0.91285 2.87412 2.99469 3.33948 3.41120 3.42881 3.59071 3.96597 4.23227 4.44505 4.47905 4.50444 4.77597 4.81620 4.87810 4.91820 5.02627 5.08417 5.14628 5.29839 5.33932 5.37941 5.49507 5.50002 5.54731 5.58104 5.60416 5.71361 5.72072 5.87204 5.96995 5.97616 6.07563 6.15283 6.21353 6.34868 6.41677 6.44501 6.50371 6.59466 6.64041 6.82224 6.93468 7.03879 7.25924 7.61426 7.72013 7.88504 8.29011 8.52922 9.41204 9.95812 10.31845 11.33436 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002407 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.665735 B =11631.843791 C =12813.728052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.709 5.709 8 C 0.512 3.488 9 O -0.534 6.534 10 C 0.070 3.930 11 H 0.091 0.909 12 C -0.169 4.169 13 O -0.350 6.350 14 C 0.096 3.904 15 C -0.041 4.041 16 C -0.152 4.152 17 C 0.093 3.907 18 N -0.484 5.484 19 C 0.095 3.905 20 C -0.148 4.148 21 N -0.722 5.722 22 C -0.235 4.235 23 H 0.074 0.926 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.410 0.590 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.136 0.864 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.138 0.862 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 -11.913 7.624 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.363 5.363 8 C 0.296 3.704 9 O -0.410 6.410 10 C 0.008 3.992 11 H 0.108 0.892 12 C -0.227 4.227 13 O -0.268 6.268 14 C 0.020 3.980 15 C -0.049 4.049 16 C -0.172 4.172 17 C -0.063 4.063 18 N -0.194 5.194 19 C -0.061 4.061 20 C -0.168 4.168 21 N -0.363 5.363 22 C -0.366 4.366 23 H 0.092 0.908 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.733 3.267 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.174 0.826 47 H 0.175 0.825 48 H 0.156 0.844 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.831 -13.070 7.012 17.262 hybrid contribution 1.655 1.860 0.584 2.557 sum -7.177 -11.210 7.596 15.326 Atomic orbital electron populations 1.21944 0.96839 1.00988 1.00948 1.21728 0.93567 0.97796 1.00039 1.21821 1.04196 0.94618 0.99017 1.20553 0.86367 0.91080 0.96049 0.92813 1.21745 0.97310 0.93125 0.88715 1.45901 1.48775 1.10457 1.31119 1.20198 0.82059 0.82333 0.85787 1.90691 1.35707 1.67706 1.46922 1.21943 0.99933 0.82764 0.94522 0.89163 1.22224 1.02980 1.01738 0.95761 1.88100 1.43021 1.14155 1.81488 1.21426 0.91940 0.85930 0.98735 1.19995 0.96103 0.94678 0.94149 1.22082 0.98122 0.96862 1.00126 1.22757 0.97035 0.91249 0.95292 1.67666 1.12237 1.37983 1.01478 1.22780 0.93277 0.93102 0.96957 1.22146 1.01055 0.95556 0.98076 1.42483 0.98747 1.21071 1.74002 1.19244 0.88751 0.96288 1.32361 0.90836 1.24731 0.96491 0.97708 1.01835 1.69671 1.06862 1.29779 1.51404 0.86203 0.80062 0.82206 0.78222 1.20542 1.21960 1.21930 0.93189 0.93544 0.93027 0.91881 0.89497 0.94979 0.94064 0.91543 0.91876 0.75381 0.91428 0.90407 0.91214 0.91539 0.91694 0.84619 0.82633 0.82519 0.84420 0.78116 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.06 16 3 C -0.14 -2.43 8.26 37.16 0.31 -2.13 16 4 C 0.17 2.99 2.18 -67.93 -0.15 2.85 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.12 1.90 4.73 -4.04 -0.02 1.88 16 7 N -0.71 -11.25 5.35 -60.29 -0.32 -11.57 16 8 C 0.51 8.43 7.18 -10.99 -0.08 8.35 16 9 O -0.53 -10.85 16.51 -14.30 -0.24 -11.08 16 10 C 0.07 0.90 3.13 -27.88 -0.09 0.81 16 11 H 0.09 1.04 7.79 -51.93 -0.40 0.64 16 12 C -0.17 -1.75 9.48 37.16 0.35 -1.40 16 13 O -0.35 -4.85 9.51 -55.09 -0.52 -5.37 16 14 C 0.10 0.99 5.92 36.01 0.21 1.20 16 15 C -0.04 -0.44 5.55 -104.32 -0.58 -1.01 16 16 C -0.15 -1.43 9.82 -39.44 -0.39 -1.82 16 17 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 18 N -0.48 -5.47 10.36 -13.25 -0.14 -5.61 16 19 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 20 C -0.15 -1.54 9.82 -39.44 -0.39 -1.92 16 21 N -0.72 -15.65 4.44 -53.43 -0.24 -15.89 16 22 C -0.24 -5.71 7.55 -15.06 -0.11 -5.82 16 23 H 0.07 1.76 7.38 -52.49 -0.39 1.37 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -25.81 13.06 55.49 0.72 -25.09 16 26 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.80 5.99 -51.93 -0.31 1.49 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.41 6.37 7.92 -40.82 -0.32 6.05 16 40 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 41 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 44 H 0.06 0.53 7.83 -51.93 -0.41 0.12 16 45 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 48 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.38 9.22 7.80 -40.82 -0.32 8.90 16 50 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 410.53 15.07 6.19 6.19 Total: -1.00 -31.32 410.53 -9.18 -40.51 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -8.28 Total: 13.82 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.33 Total: -1.71 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.03 Total: -58.16 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.76 Total: -16.46 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.32 -9.18 -40.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.894 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds