Wall clock time and date at job start Tue Mar 31 2020 19:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.08995 * 109.47098 * 299.99700 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21280 * 119.99839 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00028 * 179.97438 * 8 7 6 11 11 H 1.08991 * 109.47391 * 304.99872 * 10 8 7 12 12 C 1.53004 * 109.47129 * 64.99594 * 10 8 7 13 13 O 1.42895 * 109.47236 * 184.99284 * 10 8 7 14 14 C 1.42907 * 114.00022 * 149.99902 * 13 10 8 15 15 C 1.50703 * 109.47014 * 180.02562 * 14 13 10 16 16 C 1.38651 * 120.78709 * 269.71662 * 15 14 13 17 17 C 1.38204 * 119.15884 * 179.79657 * 16 15 14 18 18 N 1.31875 * 120.76585 * 0.49397 * 17 16 15 19 19 C 1.31871 * 121.72050 * 359.73882 * 18 17 16 20 20 C 1.38196 * 120.77034 * 0.02562 * 19 18 17 21 21 N 1.46498 * 109.47257 * 179.97438 * 4 2 1 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 4 2 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 4 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 4 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 H 1.09003 * 109.47062 * 300.00363 * 1 2 3 31 31 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 32 32 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 34 34 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 36 36 H 1.08995 * 109.47275 * 60.00121 * 3 2 1 37 37 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 38 38 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 39 39 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 40 40 H 1.08996 * 109.47248 * 180.02562 * 12 10 8 41 41 H 1.09000 * 109.47173 * 300.00101 * 12 10 8 42 42 H 1.09004 * 109.46910 * 59.99691 * 12 10 8 43 43 H 1.08997 * 109.47034 * 300.00370 * 14 13 10 44 44 H 1.08993 * 109.46548 * 60.00372 * 14 13 10 45 45 H 1.08000 * 120.41974 * 0.02562 * 16 15 14 46 46 H 1.08001 * 119.61699 * 180.20864 * 17 16 15 47 47 H 1.08002 * 119.61122 * 180.02562 * 19 18 17 48 48 H 1.07993 * 120.42394 * 180.02562 * 20 19 18 49 49 H 0.97001 * 120.00384 * 265.00562 * 21 4 2 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1848 2.5821 9 8 1.0447 -4.7515 1.8270 10 6 2.4072 -4.9302 3.7457 11 1 3.4936 -4.8531 3.7042 12 6 1.9025 -4.3228 5.0562 13 8 2.0243 -6.3053 3.6795 14 6 2.9844 -7.2036 4.2394 15 6 2.4804 -8.6184 4.1158 16 6 1.7182 -9.1908 5.1227 17 6 1.2699 -10.4894 4.9724 18 7 1.5675 -11.1851 3.8923 19 6 2.2938 -10.6746 2.9171 20 6 2.7730 -9.3807 2.9952 21 7 3.5050 -0.7218 1.2490 22 6 4.1901 0.3552 1.7447 23 1 3.6505 1.2032 2.1400 24 6 5.5782 0.3572 1.7392 25 7 6.2359 -0.6760 1.2570 26 14 6.5129 1.8261 2.4161 27 1 5.5484 2.8484 2.8953 28 1 7.3718 1.3886 3.5458 29 1 7.3616 2.4088 1.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8899 37 1 0.4436 -2.1650 1.3388 38 1 1.8183 -2.6511 0.3179 39 1 2.7231 -2.4351 2.9844 40 1 2.3378 -4.8616 5.8977 41 1 2.1945 -3.2739 5.1067 42 1 0.8160 -4.3998 5.0976 43 1 3.9286 -7.1064 3.7035 44 1 3.1372 -6.9625 5.2913 45 1 1.4747 -8.6276 6.0115 46 1 0.6728 -10.9414 5.7506 47 1 2.5169 -11.2749 2.0474 48 1 3.3669 -8.9682 2.1932 49 1 3.9897 -1.4834 0.8939 50 1 7.2058 -0.6748 1.2535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:42 Heat of formation + Delta-G solvation = -65.991203 kcal Electronic energy + Delta-G solvation = -28793.394732 eV Core-core repulsion = 24819.912500 eV Total energy + Delta-G solvation = -3973.482233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25334 -40.90318 -39.13357 -38.37397 -35.33563 -34.91226 -34.43389 -32.50127 -32.16083 -31.89545 -29.42977 -27.89283 -27.46771 -25.95853 -24.84011 -24.42273 -23.20463 -22.94859 -21.46410 -20.69234 -19.24884 -18.48899 -18.17587 -17.51778 -17.39387 -16.99170 -16.63110 -16.51865 -16.34884 -15.82828 -15.56108 -15.38246 -15.04393 -14.91047 -14.76917 -14.55676 -14.40414 -14.08767 -13.92983 -13.57748 -13.41328 -13.33898 -12.98960 -12.89540 -12.86843 -12.69854 -12.51016 -12.44705 -12.31348 -12.23090 -11.95741 -11.74305 -11.43816 -11.27676 -11.10960 -10.84273 -10.76658 -10.49400 -10.48092 -10.10152 -10.02189 -8.94365 -7.86084 -5.12888 0.12010 0.18599 1.50064 1.53627 1.59002 1.60358 1.92343 2.60780 2.71611 3.08370 3.47047 3.56637 3.63735 3.74775 3.78454 3.87475 3.94469 3.95562 4.07886 4.10803 4.18819 4.30551 4.32501 4.38455 4.41255 4.46658 4.64451 4.68068 4.70532 4.76259 4.81430 4.87434 4.93493 4.97468 4.98997 5.07956 5.16202 5.18407 5.27492 5.33225 5.33970 5.52037 5.62822 5.66620 5.73916 5.77956 5.97785 6.34189 6.59506 6.98238 7.23433 7.42476 8.13081 8.38649 9.36869 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013644 B = 0.002407 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.665735 B =11631.843791 C =12813.728052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.061 0.939 6 C 0.123 3.877 7 N -0.704 5.704 8 C 0.508 3.492 9 O -0.578 6.578 10 C 0.073 3.927 11 H 0.105 0.895 12 C -0.162 4.162 13 O -0.376 6.376 14 C 0.094 3.906 15 C -0.059 4.059 16 C -0.152 4.152 17 C 0.086 3.914 18 N -0.509 5.509 19 C 0.085 3.915 20 C -0.162 4.162 21 N -0.727 5.727 22 C -0.210 4.210 23 H 0.080 0.920 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.956 3.044 27 H -0.267 1.267 28 H -0.298 1.298 29 H -0.305 1.305 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.413 0.587 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.160 0.840 46 H 0.182 0.818 47 H 0.176 0.824 48 H 0.143 0.857 49 H 0.372 0.628 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 -11.295 9.243 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.079 0.921 6 C -0.001 4.001 7 N -0.357 5.357 8 C 0.294 3.706 9 O -0.457 6.457 10 C 0.013 3.987 11 H 0.122 0.878 12 C -0.220 4.220 13 O -0.295 6.295 14 C 0.018 3.982 15 C -0.067 4.067 16 C -0.172 4.172 17 C -0.071 4.071 18 N -0.219 5.219 19 C -0.071 4.071 20 C -0.182 4.182 21 N -0.366 5.366 22 C -0.342 4.342 23 H 0.098 0.902 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.225 1.225 29 H -0.233 1.233 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.177 0.823 46 H 0.199 0.801 47 H 0.193 0.807 48 H 0.161 0.839 49 H 0.204 0.796 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.140 -12.419 8.654 18.220 hybrid contribution 1.948 1.651 0.045 2.554 sum -8.192 -10.768 8.699 16.085 Atomic orbital electron populations 1.21853 0.94055 1.01777 1.02197 1.21636 0.95848 0.96876 0.98537 1.21731 1.01712 0.95421 1.00308 1.20676 0.83996 0.92029 0.96824 0.92150 1.21616 0.97966 0.92156 0.88399 1.45881 1.48497 1.10572 1.30744 1.20920 0.81278 0.82198 0.86208 1.90663 1.37822 1.68522 1.48729 1.21968 1.00352 0.82478 0.93943 0.87767 1.22202 1.02551 1.02243 0.94972 1.88060 1.44471 1.14690 1.82282 1.21611 0.91325 0.85134 1.00155 1.20234 0.96761 0.95007 0.94699 1.22365 0.97305 0.96947 1.00586 1.23254 0.96927 0.91490 0.95408 1.67702 1.12996 1.38852 1.02326 1.23114 0.93114 0.93386 0.97495 1.22329 1.01489 0.95897 0.98505 1.42589 1.00438 1.19983 1.73627 1.19498 0.88708 0.96382 1.29644 0.90196 1.25325 0.97595 0.99768 1.03658 1.69806 1.06325 1.31620 1.54064 0.85320 0.78869 0.80134 0.76939 1.19093 1.22545 1.23326 0.92074 0.92188 0.92505 0.93316 0.93122 0.93181 0.93326 0.90221 0.93576 0.75030 0.88805 0.89808 0.91989 0.91117 0.89045 0.82271 0.80063 0.80740 0.83927 0.79579 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.84 71.98 0.64 -2.86 16 2 C -0.11 -3.40 2.69 -10.79 -0.03 -3.43 16 3 C -0.13 -4.47 8.26 71.98 0.59 -3.88 16 4 C 0.17 5.92 2.18 44.99 0.10 6.02 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 6 C 0.12 3.98 4.73 86.38 0.41 4.39 16 7 N -0.70 -21.90 5.35 -463.06 -2.48 -24.38 16 8 C 0.51 16.52 7.18 87.66 0.63 17.15 16 9 O -0.58 -23.67 16.51 15.96 0.26 -23.41 16 10 C 0.07 1.81 3.13 29.85 0.09 1.90 16 11 H 0.10 2.24 7.79 -2.39 -0.02 2.22 16 12 C -0.16 -2.97 9.48 71.98 0.68 -2.29 16 13 O -0.38 -10.05 9.51 -129.99 -1.24 -11.29 16 14 C 0.09 1.79 5.92 71.24 0.42 2.21 16 15 C -0.06 -1.19 5.55 -19.67 -0.11 -1.30 16 16 C -0.15 -2.62 9.82 22.36 0.22 -2.40 16 17 C 0.09 1.53 11.18 84.68 0.95 2.48 16 18 N -0.51 -11.20 10.36 -195.84 -2.03 -13.22 16 19 C 0.08 1.71 11.18 84.68 0.95 2.66 16 20 C -0.16 -3.34 9.82 22.36 0.22 -3.12 16 21 N -0.73 -31.35 4.44 -322.94 -1.44 -32.79 16 22 C -0.21 -10.08 7.55 84.03 0.63 -9.44 16 23 H 0.08 3.70 7.38 -2.91 -0.02 3.68 16 24 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 25 N -0.97 -54.65 13.06 21.65 0.28 -54.36 16 26 Si 0.96 42.94 29.55 68.60 2.03 44.97 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 29 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.36 6.54 -2.39 -0.02 1.34 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.06 5.99 -2.39 -0.01 2.04 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.39 6.71 -2.39 -0.02 2.38 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.41 12.45 7.92 -92.71 -0.73 11.71 16 40 H 0.09 1.24 7.87 -2.39 -0.02 1.22 16 41 H 0.08 1.43 7.92 -2.39 -0.02 1.41 16 42 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.07 1.26 8.04 -2.39 -0.02 1.24 16 44 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 45 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 46 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 47 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 48 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 49 H 0.37 18.06 7.80 -92.71 -0.72 17.34 16 50 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -68.17 410.53 1.74 -66.43 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -0.52 Total: 43.23 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.86 Total: 4.83 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -5.66 Total: -124.76 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.97 Total: -34.70 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -68.17 1.74 -66.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.441 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds