Wall clock time and date at job start Tue Mar 31 2020 19:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47155 * 55.00530 * 10 8 7 12 12 C 1.52999 * 109.47254 * 295.00167 * 10 8 7 13 13 O 1.42905 * 109.47235 * 175.00034 * 10 8 7 14 14 C 1.42894 * 114.00300 * 209.99824 * 13 10 8 15 15 C 1.50697 * 109.47341 * 179.97438 * 14 13 10 16 16 C 1.38657 * 120.78985 * 269.72289 * 15 14 13 17 17 C 1.38200 * 119.16014 * 179.79827 * 16 15 14 18 18 N 1.31875 * 120.76600 * 0.48605 * 17 16 15 19 19 C 1.31870 * 121.72444 * 359.74158 * 18 17 16 20 20 C 1.38207 * 120.76258 * 0.02562 * 19 18 17 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 31 31 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 32 32 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.09001 * 109.46974 * 299.99974 * 12 10 8 41 41 H 1.08993 * 109.47380 * 59.99542 * 12 10 8 42 42 H 1.09000 * 109.47297 * 179.97438 * 12 10 8 43 43 H 1.08997 * 109.47203 * 300.00569 * 14 13 10 44 44 H 1.09011 * 109.46749 * 60.00499 * 14 13 10 45 45 H 1.07997 * 120.41758 * 0.02562 * 16 15 14 46 46 H 1.08005 * 119.61790 * 180.20599 * 17 16 15 47 47 H 1.07994 * 119.61961 * 180.02562 * 19 18 17 48 48 H 1.07998 * 120.41293 * 179.97438 * 20 19 18 49 49 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0433 0.7925 5.0286 10 6 2.4065 -0.7793 6.1425 11 1 3.4929 -0.7811 6.0554 12 6 1.9027 -2.2183 6.2711 13 8 2.0228 -0.0350 7.3005 14 6 2.9825 -0.0705 8.3586 15 6 2.4777 0.7433 9.5222 16 6 2.7741 2.0939 9.6255 17 6 2.2903 2.8089 10.7046 18 7 1.5632 2.2190 11.6333 19 6 1.2656 0.9359 11.5701 20 6 1.7106 0.1581 10.5179 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 6.7633 -4.1715 0.5429 28 1 5.7050 -3.4695 -1.5230 29 1 7.8056 -2.4711 -0.8366 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 0.8162 -2.2164 6.3583 41 1 2.1953 -2.7860 5.3879 42 1 2.3380 -2.6777 7.1586 43 1 3.1359 -1.1020 8.6755 44 1 3.9265 0.3458 8.0069 45 1 3.3725 2.5816 8.8702 46 1 2.5139 3.8620 10.7906 47 1 0.6673 0.4877 12.3494 48 1 1.4639 -0.8923 10.4719 49 1 3.9902 -0.0337 1.7306 50 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:46 Heat of formation + Delta-G solvation = -44.869707 kcal Electronic energy + Delta-G solvation = -28926.473675 eV Core-core repulsion = 24953.907339 eV Total energy + Delta-G solvation = -3972.566336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46130 -39.81411 -38.08090 -37.17555 -33.95972 -33.64813 -33.60055 -31.47044 -31.37860 -30.17526 -27.35931 -27.13469 -26.69973 -24.43953 -23.72463 -23.34568 -22.59659 -22.23377 -20.20216 -18.89959 -17.57560 -17.49133 -17.19335 -16.74876 -16.51476 -15.88778 -15.85659 -15.44977 -14.87257 -14.76709 -14.11102 -14.08448 -13.97210 -13.85073 -13.65471 -13.61419 -13.50064 -13.17474 -12.84192 -12.75514 -12.44165 -12.19691 -11.97739 -11.80486 -11.49951 -11.46251 -11.32058 -11.00256 -10.86001 -10.58931 -10.30892 -10.15159 -10.08032 -9.99176 -9.96168 -9.75260 -9.40998 -9.38971 -9.26349 -8.99633 -8.72071 -7.15965 -6.20028 -3.21961 0.86684 0.88844 2.79738 2.93643 3.44315 3.48236 3.55488 3.62655 3.91840 4.20987 4.41667 4.46089 4.56814 4.72061 4.78644 4.83855 4.87361 4.96047 5.05212 5.10768 5.23702 5.26257 5.35426 5.41189 5.45080 5.52240 5.53227 5.56150 5.65425 5.68737 5.71573 5.83967 5.92873 5.99966 6.04389 6.04961 6.22831 6.27075 6.33862 6.42101 6.50901 6.61392 6.73268 6.82886 6.89965 6.95980 7.69792 7.71579 7.79684 8.44697 8.64694 9.09251 9.95990 10.10814 11.27349 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.002476 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.385493 B =11307.625174 C =12448.665083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.176 3.824 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.711 5.711 8 C 0.511 3.489 9 O -0.532 6.532 10 C 0.070 3.930 11 H 0.090 0.910 12 C -0.169 4.169 13 O -0.349 6.349 14 C 0.096 3.904 15 C -0.041 4.041 16 C -0.149 4.149 17 C 0.096 3.904 18 N -0.484 5.484 19 C 0.094 3.906 20 C -0.152 4.152 21 N -0.731 5.731 22 C -0.332 4.332 23 H 0.065 0.935 24 C -0.042 4.042 25 N -0.942 5.942 26 Si 1.080 2.920 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.289 1.289 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.138 0.862 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.136 0.864 49 H 0.368 0.632 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.337 -0.391 14.176 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.365 5.365 8 C 0.296 3.704 9 O -0.408 6.408 10 C 0.009 3.991 11 H 0.108 0.892 12 C -0.227 4.227 13 O -0.267 6.267 14 C 0.020 3.980 15 C -0.050 4.050 16 C -0.169 4.169 17 C -0.061 4.061 18 N -0.193 5.193 19 C -0.063 4.063 20 C -0.172 4.172 21 N -0.374 5.374 22 C -0.463 4.463 23 H 0.083 0.917 24 C -0.240 4.240 25 N -0.587 5.587 26 Si 0.911 3.089 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.175 0.825 47 H 0.174 0.826 48 H 0.154 0.846 49 H 0.201 0.799 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.932 0.132 14.444 16.479 hybrid contribution -0.537 -0.243 -0.465 0.751 sum -8.469 -0.112 13.979 16.344 Atomic orbital electron populations 1.21921 0.96586 1.01047 1.01107 1.21702 0.93716 0.97047 1.00781 1.21763 1.02260 0.95744 0.99980 1.20446 0.85771 0.96767 0.90467 0.92754 1.21844 0.97462 0.97842 0.84158 1.45936 1.48855 1.36711 1.04993 1.20226 0.82084 0.83795 0.84321 1.90695 1.35563 1.27996 1.86587 1.21939 0.99854 0.91836 0.85518 0.89238 1.22223 1.03028 0.94100 1.03362 1.88100 1.43041 1.72291 1.23311 1.21430 0.91904 0.98646 0.86054 1.19985 0.96125 0.94255 0.94590 1.22145 1.01067 0.94105 0.99540 1.22783 0.93240 1.00339 0.89727 1.67666 1.12247 1.11693 1.27725 1.22761 0.97026 0.89561 0.96953 1.22082 0.98090 1.01821 0.95181 1.42458 0.99424 1.33353 1.62115 1.20036 0.91699 1.06225 1.28321 0.91678 1.25711 0.93380 1.03150 1.01715 1.70868 1.37357 1.15383 1.35062 0.83224 0.75803 0.74542 0.75314 1.22372 1.22195 1.21467 0.92913 0.93409 0.93159 0.90869 0.91754 0.94043 0.93534 0.91446 0.91483 0.75502 0.91168 0.90445 0.91333 0.91650 0.91559 0.84449 0.82504 0.82605 0.84610 0.79850 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 37.15 0.33 -1.72 16 2 C -0.11 -1.85 2.91 -90.62 -0.26 -2.12 16 3 C -0.14 -2.34 8.69 37.16 0.32 -2.02 16 4 C 0.18 3.16 2.27 -67.93 -0.15 3.00 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.84 4.51 -4.04 -0.02 1.82 16 7 N -0.71 -11.32 5.35 -60.29 -0.32 -11.65 16 8 C 0.51 8.40 7.18 -10.99 -0.08 8.32 16 9 O -0.53 -10.76 16.51 -14.31 -0.24 -11.00 16 10 C 0.07 0.90 3.13 -27.88 -0.09 0.81 16 11 H 0.09 1.02 7.79 -51.93 -0.40 0.62 16 12 C -0.17 -1.76 9.48 37.16 0.35 -1.40 16 13 O -0.35 -4.82 9.51 -55.09 -0.52 -5.35 16 14 C 0.10 0.99 5.92 36.00 0.21 1.20 16 15 C -0.04 -0.44 5.55 -104.32 -0.58 -1.02 16 16 C -0.15 -1.53 9.82 -39.44 -0.39 -1.92 16 17 C 0.10 0.97 11.18 -17.55 -0.20 0.77 16 18 N -0.48 -5.44 10.36 -13.25 -0.14 -5.58 16 19 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 20 C -0.15 -1.42 9.82 -39.44 -0.39 -1.81 16 21 N -0.73 -16.05 3.79 -53.43 -0.20 -16.25 16 22 C -0.33 -8.40 9.93 -15.06 -0.15 -8.55 16 23 H 0.07 1.65 7.83 -52.48 -0.41 1.24 16 24 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 25 N -0.94 -27.14 13.70 55.49 0.76 -26.38 16 26 Si 1.08 24.46 29.92 -169.99 -5.09 19.38 16 27 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.30 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.25 7.60 -51.93 -0.39 0.85 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.74 6.32 -51.93 -0.33 0.41 16 37 H 0.07 1.20 6.17 -51.93 -0.32 0.88 16 38 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 39 H 0.41 6.42 7.92 -40.82 -0.32 6.10 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.76 7.92 -51.93 -0.41 0.35 16 42 H 0.07 0.57 7.87 -51.93 -0.41 0.16 16 43 H 0.07 0.53 7.83 -51.93 -0.41 0.12 16 44 H 0.07 0.62 8.04 -51.92 -0.42 0.20 16 45 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 47 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.37 8.60 6.63 -40.82 -0.27 8.33 16 50 H 0.26 7.26 6.77 -40.82 -0.28 6.98 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -32.64 409.35 -9.04 -41.67 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -8.08 Total: 14.12 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.38 Total: -5.14 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.10 Total: -59.86 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.76 Total: -16.34 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.09 Total: 19.38 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.64 -9.04 -41.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.195 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds