Wall clock time and date at job start Tue Mar 31 2020 19:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47155 * 55.00530 * 10 8 7 12 12 C 1.52999 * 109.47254 * 295.00167 * 10 8 7 13 13 O 1.42905 * 109.47235 * 175.00034 * 10 8 7 14 14 C 1.42894 * 114.00300 * 209.99824 * 13 10 8 15 15 C 1.50697 * 109.47341 * 179.97438 * 14 13 10 16 16 C 1.38657 * 120.78985 * 269.72289 * 15 14 13 17 17 C 1.38200 * 119.16014 * 179.79827 * 16 15 14 18 18 N 1.31875 * 120.76600 * 0.48605 * 17 16 15 19 19 C 1.31870 * 121.72444 * 359.74158 * 18 17 16 20 20 C 1.38207 * 120.76258 * 0.02562 * 19 18 17 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 31 31 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 32 32 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.09001 * 109.46974 * 299.99974 * 12 10 8 41 41 H 1.08993 * 109.47380 * 59.99542 * 12 10 8 42 42 H 1.09000 * 109.47297 * 179.97438 * 12 10 8 43 43 H 1.08997 * 109.47203 * 300.00569 * 14 13 10 44 44 H 1.09011 * 109.46749 * 60.00499 * 14 13 10 45 45 H 1.07997 * 120.41758 * 0.02562 * 16 15 14 46 46 H 1.08005 * 119.61790 * 180.20599 * 17 16 15 47 47 H 1.07994 * 119.61961 * 180.02562 * 19 18 17 48 48 H 1.07998 * 120.41293 * 179.97438 * 20 19 18 49 49 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0433 0.7925 5.0286 10 6 2.4065 -0.7793 6.1425 11 1 3.4929 -0.7811 6.0554 12 6 1.9027 -2.2183 6.2711 13 8 2.0228 -0.0350 7.3005 14 6 2.9825 -0.0705 8.3586 15 6 2.4777 0.7433 9.5222 16 6 2.7741 2.0939 9.6255 17 6 2.2903 2.8089 10.7046 18 7 1.5632 2.2190 11.6333 19 6 1.2656 0.9359 11.5701 20 6 1.7106 0.1581 10.5179 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 6.7633 -4.1715 0.5429 28 1 5.7050 -3.4695 -1.5230 29 1 7.8056 -2.4711 -0.8366 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 0.8162 -2.2164 6.3583 41 1 2.1953 -2.7860 5.3879 42 1 2.3380 -2.6777 7.1586 43 1 3.1359 -1.1020 8.6755 44 1 3.9265 0.3458 8.0069 45 1 3.3725 2.5816 8.8702 46 1 2.5139 3.8620 10.7906 47 1 0.6673 0.4877 12.3494 48 1 1.4639 -0.8923 10.4719 49 1 3.9902 -0.0337 1.7306 50 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:45 Heat of formation + Delta-G solvation = -65.180110 kcal Electronic energy + Delta-G solvation = -28927.354400 eV Core-core repulsion = 24953.907339 eV Total energy + Delta-G solvation = -3973.447061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30393 -40.97163 -39.30227 -38.46808 -35.49923 -35.24929 -34.45319 -32.44627 -32.18025 -31.82116 -28.81935 -27.99255 -27.92393 -25.85243 -24.94159 -24.44587 -23.97768 -22.99944 -21.47162 -20.29403 -19.36167 -18.60486 -18.33260 -17.57587 -17.45080 -17.14618 -16.72115 -16.55145 -16.25431 -16.03346 -15.65985 -15.44128 -15.22684 -14.98399 -14.80444 -14.64688 -14.56239 -14.23892 -14.06861 -13.66684 -13.50123 -13.38304 -13.03180 -12.92315 -12.76938 -12.72194 -12.53785 -12.45638 -12.33995 -12.10975 -11.90651 -11.72007 -11.45261 -11.17437 -11.10876 -10.87230 -10.79524 -10.54777 -10.50512 -10.12092 -10.09408 -9.06427 -8.29778 -5.25316 0.09699 0.16634 1.51338 1.62477 1.71088 1.84608 1.85463 2.67239 2.74119 3.04650 3.45949 3.53971 3.58049 3.69660 3.72341 3.74088 3.83316 3.90002 4.02216 4.08070 4.14574 4.16677 4.23768 4.35276 4.35899 4.38448 4.41941 4.62388 4.64706 4.66574 4.75002 4.79670 4.84885 4.85448 4.95278 5.01584 5.07448 5.12935 5.14259 5.22631 5.31571 5.37859 5.49472 5.56779 5.70622 5.71916 5.92789 6.50147 6.56860 6.96413 7.12800 7.15462 8.03660 8.16117 9.20962 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.002476 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.385493 B =11307.625174 C =12448.665083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.178 3.822 5 H 0.056 0.944 6 C 0.120 3.880 7 N -0.707 5.707 8 C 0.508 3.492 9 O -0.575 6.575 10 C 0.074 3.926 11 H 0.104 0.896 12 C -0.162 4.162 13 O -0.376 6.376 14 C 0.093 3.907 15 C -0.059 4.059 16 C -0.162 4.162 17 C 0.085 3.915 18 N -0.509 5.509 19 C 0.086 3.914 20 C -0.153 4.153 21 N -0.735 5.735 22 C -0.317 4.317 23 H 0.067 0.933 24 C -0.099 4.099 25 N -0.976 5.976 26 Si 1.123 2.877 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.302 1.302 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.411 0.589 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.143 0.857 46 H 0.176 0.824 47 H 0.183 0.817 48 H 0.159 0.841 49 H 0.359 0.641 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 -1.959 14.525 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.069 3.931 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.360 5.360 8 C 0.294 3.706 9 O -0.454 6.454 10 C 0.013 3.987 11 H 0.122 0.878 12 C -0.220 4.220 13 O -0.294 6.294 14 C 0.018 3.982 15 C -0.067 4.067 16 C -0.182 4.182 17 C -0.071 4.071 18 N -0.218 5.218 19 C -0.070 4.070 20 C -0.172 4.172 21 N -0.377 5.377 22 C -0.449 4.449 23 H 0.085 0.915 24 C -0.291 4.291 25 N -0.624 5.624 26 Si 0.950 3.050 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.229 1.229 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.248 0.752 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.161 0.839 46 H 0.193 0.807 47 H 0.200 0.800 48 H 0.177 0.823 49 H 0.192 0.808 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.016 -1.460 14.788 17.381 hybrid contribution -0.299 0.282 -0.565 0.699 sum -9.315 -1.177 14.223 17.043 Atomic orbital electron populations 1.21838 0.93698 1.02106 1.02179 1.21602 0.96082 0.96382 0.98830 1.21694 1.00005 0.96198 1.01231 1.20575 0.83496 0.97220 0.91803 0.92620 1.21692 0.98024 0.96870 0.83817 1.45917 1.48591 1.36528 1.04961 1.20939 0.81304 0.83093 0.85258 1.90668 1.37625 1.29928 1.87202 1.21961 1.00296 0.92603 0.83863 0.87805 1.22202 1.02613 0.92307 1.04871 1.88061 1.44486 1.72847 1.24040 1.21617 0.91305 1.00228 0.85091 1.20222 0.96787 0.94546 0.95174 1.22330 1.01491 0.94487 0.99914 1.23120 0.93073 1.01333 0.89561 1.67701 1.13008 1.12745 1.28388 1.23255 0.96917 0.89194 0.97673 1.22364 0.97292 1.02980 0.94571 1.42524 1.01028 1.32465 1.61698 1.20281 0.91823 1.05999 1.26767 0.91536 1.26867 0.94918 1.04527 1.02749 1.70969 1.37613 1.16583 1.37262 0.82644 0.74359 0.72941 0.75058 1.21077 1.20375 1.22890 0.92297 0.91898 0.92143 0.92921 0.95084 0.92262 0.92818 0.92762 0.90252 0.75241 0.91934 0.89977 0.88680 0.89028 0.91107 0.83923 0.80716 0.80044 0.82288 0.80848 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.84 71.98 0.64 -2.89 16 2 C -0.11 -3.49 2.91 -10.79 -0.03 -3.52 16 3 C -0.13 -4.42 8.69 71.99 0.63 -3.79 16 4 C 0.18 6.26 2.27 44.99 0.10 6.36 16 5 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 6 C 0.12 3.91 4.51 86.38 0.39 4.30 16 7 N -0.71 -22.17 5.35 -463.06 -2.48 -24.65 16 8 C 0.51 16.49 7.18 87.66 0.63 17.12 16 9 O -0.57 -23.38 16.51 15.94 0.26 -23.12 16 10 C 0.07 1.81 3.13 29.85 0.09 1.90 16 11 H 0.10 2.22 7.79 -2.39 -0.02 2.21 16 12 C -0.16 -3.01 9.48 71.98 0.68 -2.32 16 13 O -0.38 -9.98 9.51 -129.99 -1.24 -11.22 16 14 C 0.09 1.77 5.92 71.24 0.42 2.20 16 15 C -0.06 -1.19 5.55 -19.67 -0.11 -1.30 16 16 C -0.16 -3.31 9.82 22.36 0.22 -3.09 16 17 C 0.09 1.70 11.18 84.68 0.95 2.65 16 18 N -0.51 -11.13 10.36 -195.84 -2.03 -13.16 16 19 C 0.09 1.53 11.18 84.68 0.95 2.48 16 20 C -0.15 -2.61 9.82 22.36 0.22 -2.39 16 21 N -0.74 -32.43 3.79 -322.94 -1.23 -33.65 16 22 C -0.32 -15.95 9.93 84.03 0.83 -15.12 16 23 H 0.07 3.30 7.83 -2.91 -0.02 3.27 16 24 C -0.10 -5.29 5.50 84.86 0.47 -4.83 16 25 N -0.98 -57.16 13.70 21.65 0.30 -56.86 16 26 Si 1.12 49.04 29.92 68.60 2.05 51.10 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 30 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.03 1.21 7.60 -2.39 -0.02 1.19 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.67 6.32 -2.39 -0.02 1.66 16 37 H 0.05 1.93 6.17 -2.39 -0.01 1.92 16 38 H 0.08 2.42 6.71 -2.39 -0.02 2.40 16 39 H 0.41 12.64 7.92 -92.71 -0.73 11.91 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.44 7.92 -2.39 -0.02 1.42 16 42 H 0.09 1.26 7.87 -2.39 -0.02 1.25 16 43 H 0.09 1.22 7.83 -2.39 -0.02 1.20 16 44 H 0.07 1.25 8.04 -2.38 -0.02 1.23 16 45 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 46 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 47 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 49 H 0.36 17.18 6.63 -92.71 -0.61 16.56 16 50 H 0.24 14.28 6.77 -92.71 -0.63 13.65 16 Total: -1.00 -71.03 409.35 2.46 -68.57 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -0.26 Total: 45.24 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 7.07 Total: -2.25 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -5.44 Total: -128.32 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.97 Total: -34.34 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.05 Total: 51.10 kcal Total: -71.03 2.46 -68.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.394 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds