Wall clock time and date at job start Tue Mar 31 2020 19:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46690 * 2 1 4 4 O 1.42905 * 109.46824 * 240.00407 * 2 1 3 5 5 C 1.35911 * 117.00126 * 84.89740 * 4 2 1 6 6 C 1.39145 * 120.47255 * 354.50242 * 5 4 2 7 7 C 1.38540 * 118.37258 * 180.02562 * 6 5 4 8 8 C 1.38251 * 119.22170 * 359.97438 * 7 6 5 9 9 N 1.31851 * 120.88564 * 0.02562 * 8 7 6 10 10 C 1.31839 * 121.78204 * 359.70292 * 9 8 7 11 11 C 1.50693 * 109.47468 * 120.00193 * 2 1 3 12 12 O 1.21284 * 120.00151 * 119.99876 * 11 2 1 13 13 N 1.34782 * 119.99900 * 300.00254 * 11 2 1 14 14 C 1.46505 * 119.99712 * 180.02562 * 13 11 2 15 15 H 1.08999 * 109.47218 * 34.99295 * 14 13 11 16 16 C 1.52994 * 109.46750 * 154.99816 * 14 13 11 17 17 N 1.46497 * 109.47324 * 304.99463 * 16 14 13 18 18 C 1.36944 * 120.00242 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99857 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00006 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99876 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47045 * 90.00038 * 22 20 18 24 24 H 1.48498 * 109.47257 * 210.00229 * 22 20 18 25 25 H 1.48508 * 109.47055 * 329.99956 * 22 20 18 26 26 C 1.53004 * 109.46913 * 274.99464 * 14 13 11 27 27 C 1.53006 * 109.46887 * 60.00156 * 26 14 13 28 28 C 1.52997 * 109.47109 * 180.02562 * 26 14 13 29 29 C 1.53000 * 109.47153 * 300.00286 * 26 14 13 30 30 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47268 * 299.99910 * 1 2 3 32 32 H 1.09003 * 109.47841 * 59.99509 * 1 2 3 33 33 H 1.08000 * 120.81375 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.38674 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.55914 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.66120 * 180.29033 * 10 9 8 37 37 H 0.96993 * 120.00088 * 359.97438 * 13 11 2 38 38 H 1.09002 * 109.47679 * 64.99974 * 16 14 13 39 39 H 1.09003 * 109.47131 * 184.99652 * 16 14 13 40 40 H 0.96995 * 120.00122 * 0.02562 * 17 16 14 41 41 H 0.97000 * 120.00011 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.47049 * 59.99963 * 27 26 14 43 43 H 1.08994 * 109.46897 * 179.97438 * 27 26 14 44 44 H 1.09001 * 109.47247 * 300.00202 * 27 26 14 45 45 H 1.09000 * 109.47049 * 59.99610 * 28 26 14 46 46 H 1.08994 * 109.47231 * 180.02562 * 28 26 14 47 47 H 1.09005 * 109.47076 * 300.00189 * 28 26 14 48 48 H 1.09006 * 109.47242 * 60.00208 * 29 26 14 49 49 H 1.09000 * 109.47238 * 179.97438 * 29 26 14 50 50 H 1.08995 * 109.47218 * 300.00175 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1104 0.0622 -2.3048 6 6 1.6566 1.3772 -2.3389 7 6 1.7836 2.0870 -3.5218 8 6 2.3530 1.4711 -4.6207 9 7 2.7730 0.2230 -4.5550 10 6 2.6752 -0.4852 -3.4473 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1190 13 7 1.7068 -0.2500 2.4545 14 6 2.1957 -0.9403 3.6507 15 1 3.1950 -1.3322 3.4611 16 6 2.2469 0.0429 4.8217 17 7 3.0548 1.2063 4.4476 18 6 3.2437 2.2252 5.3428 19 1 2.7975 2.1709 6.3248 20 6 4.0088 3.3278 4.9881 21 7 4.5522 3.3942 3.7912 22 14 4.2671 4.7174 6.2095 23 1 5.4825 4.4458 7.0184 24 1 4.4369 5.9968 5.4751 25 1 3.0871 4.8141 7.1061 26 6 1.2521 -2.0946 3.9948 27 6 1.2008 -3.0778 2.8236 28 6 1.7623 -2.8152 5.2443 29 6 -0.1506 -1.5447 4.2608 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 1.2154 1.8329 -1.4648 34 1 1.4427 3.1099 -3.5844 35 1 2.4543 2.0192 -5.5457 36 1 3.0347 -1.5034 -3.4304 37 1 1.1494 0.5388 2.5436 38 1 1.2359 0.3669 5.0688 39 1 2.6934 -0.4462 5.6875 40 1 3.4559 1.2549 3.5658 41 1 5.0871 4.1645 3.5435 42 1 2.2002 -3.4696 2.6340 43 1 0.5290 -3.9003 3.0689 44 1 0.8371 -2.5642 1.9336 45 1 1.7986 -2.1145 6.0784 46 1 1.0904 -3.6377 5.4891 47 1 2.7618 -3.2069 5.0551 48 1 -0.5144 -1.0310 3.3708 49 1 -0.8229 -2.3670 4.5055 50 1 -0.1141 -0.8442 5.0951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755832080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:40 Heat of formation + Delta-G solvation = -50.309323 kcal Electronic energy + Delta-G solvation = -30162.430303 eV Core-core repulsion = 26189.628088 eV Total energy + Delta-G solvation = -3972.802215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00573 -41.19432 -39.51145 -38.32082 -36.19607 -34.88126 -33.40969 -33.17549 -32.60260 -31.00699 -29.28449 -28.13075 -27.90253 -26.09995 -25.49407 -24.69639 -23.89997 -23.00057 -21.45377 -19.90222 -19.51856 -19.24465 -18.34203 -17.76279 -17.33540 -17.15097 -16.86663 -16.57583 -16.26999 -15.60253 -15.44432 -15.34421 -15.07664 -14.86647 -14.80849 -14.63502 -14.33216 -14.14454 -13.97026 -13.69403 -13.33294 -13.14453 -13.07232 -13.02867 -12.93071 -12.74519 -12.63865 -12.54005 -12.40456 -12.23604 -12.14889 -12.02292 -11.75327 -11.62118 -11.29507 -10.97384 -10.86135 -10.68037 -10.60170 -9.94619 -9.47448 -8.98536 -7.93786 -5.22702 0.13126 0.21840 1.48815 1.49929 1.51641 1.53515 1.58175 2.51052 2.57054 2.78961 3.40353 3.44106 3.56454 3.62726 3.65909 3.75870 3.82907 3.86046 3.92220 4.04731 4.13351 4.25114 4.29781 4.34812 4.44746 4.58404 4.61003 4.64868 4.75968 4.83042 4.85638 4.90612 4.97374 5.00153 5.05851 5.07732 5.09591 5.10132 5.17402 5.25515 5.32078 5.42560 5.43890 5.52128 5.56283 5.63088 6.12154 6.27060 6.52226 6.94359 7.19414 7.34787 8.08209 8.31735 9.29195 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008583 B = 0.003784 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.399746 B = 7397.486210 C = 9971.816334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.065 3.935 3 H 0.107 0.893 4 O -0.300 6.300 5 C 0.067 3.933 6 C -0.171 4.171 7 C -0.123 4.123 8 C 0.049 3.951 9 N -0.470 5.470 10 C 0.054 3.946 11 C 0.517 3.483 12 O -0.558 6.558 13 N -0.694 5.694 14 C 0.160 3.840 15 H 0.052 0.948 16 C 0.145 3.855 17 N -0.743 5.743 18 C -0.241 4.241 19 H 0.079 0.921 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.969 3.031 23 H -0.294 1.294 24 H -0.298 1.298 25 H -0.266 1.266 26 C -0.069 4.069 27 C -0.122 4.122 28 C -0.141 4.141 29 C -0.137 4.137 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.411 0.589 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.057 0.943 49 H 0.068 0.932 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 -6.134 -9.125 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 H 0.124 0.876 4 O -0.212 6.212 5 C 0.020 3.980 6 C -0.197 4.197 7 C -0.142 4.142 8 C -0.108 4.108 9 N -0.180 5.180 10 C -0.103 4.103 11 C 0.303 3.697 12 O -0.436 6.436 13 N -0.346 5.346 14 C 0.055 3.945 15 H 0.071 0.929 16 C 0.018 3.982 17 N -0.386 5.386 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.619 5.619 22 Si 0.798 3.202 23 H -0.221 1.221 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.071 4.071 27 C -0.179 4.179 28 C -0.198 4.198 29 C -0.195 4.195 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.176 0.824 34 H 0.190 0.810 35 H 0.204 0.796 36 H 0.179 0.821 37 H 0.247 0.753 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.087 0.913 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.314 -7.356 -9.712 18.047 hybrid contribution 0.409 1.644 1.068 2.003 sum -12.905 -5.712 -8.643 16.549 Atomic orbital electron populations 1.22324 0.89851 1.04606 1.05541 1.22357 0.97628 0.96872 0.82604 0.87578 1.86178 1.81421 1.37521 1.16057 1.20378 0.97540 0.92255 0.87867 1.22127 1.02919 0.93285 1.01400 1.22408 0.97494 1.02361 0.91941 1.23258 0.96468 0.90712 1.00384 1.67745 1.15860 1.08803 1.25577 1.22291 0.99811 1.01426 0.86788 1.20301 0.80140 0.84384 0.84907 1.90714 1.38587 1.27368 1.86942 1.45700 1.52961 1.31701 1.04246 1.21117 0.97031 0.92422 0.83936 0.92932 1.21233 0.95346 0.86937 0.94642 1.42536 1.60860 1.19279 1.15884 1.19615 1.24900 0.96826 0.95893 0.90284 1.25478 1.01070 1.01301 0.98450 1.69815 1.39652 1.31426 1.20990 0.85209 0.77987 0.78737 0.78217 1.22115 1.22435 1.19052 1.20850 0.96080 0.93974 0.96183 1.21790 1.00850 0.98362 0.96918 1.21894 1.00917 1.00619 0.96395 1.21886 0.94248 1.01357 1.01967 0.91005 0.88124 0.89299 0.82403 0.81017 0.79635 0.82111 0.75291 0.93292 0.94575 0.79531 0.94200 0.94540 0.91853 0.93798 0.91910 0.90658 0.93682 0.92358 0.91267 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.08 71.98 0.65 -2.18 16 2 C 0.07 1.64 2.65 29.84 0.08 1.72 16 3 H 0.11 2.54 6.36 -2.38 -0.02 2.53 16 4 O -0.30 -8.79 9.34 -73.51 -0.69 -9.47 16 5 C 0.07 1.75 6.62 22.60 0.15 1.90 16 6 C -0.17 -3.52 8.34 22.56 0.19 -3.33 16 7 C -0.12 -2.07 10.11 22.34 0.23 -1.84 16 8 C 0.05 0.93 11.18 84.69 0.95 1.87 16 9 N -0.47 -11.79 10.36 -195.45 -2.02 -13.81 16 10 C 0.05 1.44 11.14 84.80 0.94 2.38 16 11 C 0.52 16.34 5.59 87.65 0.49 16.83 16 12 O -0.56 -22.01 13.62 15.99 0.22 -21.79 16 13 N -0.69 -20.23 3.53 -442.52 -1.56 -21.79 16 14 C 0.16 5.06 1.69 44.99 0.08 5.14 16 15 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 16 C 0.14 5.17 5.10 86.38 0.44 5.61 16 17 N -0.74 -34.98 5.43 -343.46 -1.87 -36.84 16 18 C -0.24 -12.60 9.99 84.03 0.84 -11.76 16 19 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 21 N -0.97 -57.24 13.06 21.65 0.28 -56.96 16 22 Si 0.97 44.35 29.55 68.60 2.03 46.37 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C -0.07 -1.73 0.62 -52.18 -0.03 -1.76 16 27 C -0.12 -3.23 7.00 71.98 0.50 -2.73 16 28 C -0.14 -3.25 8.12 71.98 0.58 -2.66 16 29 C -0.14 -2.77 7.97 71.98 0.57 -2.20 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.34 7.57 -2.39 -0.02 1.32 16 32 H 0.09 1.25 6.92 -2.39 -0.02 1.23 16 33 H 0.16 2.65 5.59 -2.91 -0.02 2.63 16 34 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.16 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.41 10.72 8.02 -92.71 -0.74 9.98 16 38 H 0.05 1.60 6.17 -2.39 -0.01 1.59 16 39 H 0.04 1.32 6.71 -2.39 -0.02 1.31 16 40 H 0.37 19.23 7.33 -92.71 -0.68 18.55 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.04 1.14 7.53 -2.38 -0.02 1.13 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.23 5.77 -2.39 -0.01 1.22 16 45 H 0.06 1.45 6.54 -2.39 -0.02 1.43 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 47 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.06 1.11 7.60 -2.38 -0.02 1.09 16 49 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 Total: -1.00 -71.24 393.95 3.06 -68.18 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.46 Total: 42.54 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 7.13 Total: 3.59 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -5.17 Total: -129.41 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.47 Total: -31.27 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.24 3.06 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755832080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.871 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds