Wall clock time and date at job start Tue Mar 31 2020 18:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99594 * 2 1 4 4 N 1.46901 * 109.47219 * 126.18949 * 3 2 1 5 5 C 1.46899 * 110.99884 * 284.12914 * 4 3 2 6 6 C 1.50702 * 109.47333 * 75.82616 * 5 4 3 7 7 H 1.08000 * 119.99727 * 2.06721 * 6 5 4 8 8 C 1.37875 * 119.99864 * 182.06825 * 6 5 4 9 9 N 1.31511 * 120.00191 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99716 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47143 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47117 * 120.00035 * 10 8 6 13 13 H 1.48500 * 109.47128 * 240.00198 * 10 8 6 14 14 C 1.46897 * 111.00233 * 160.17230 * 4 3 2 15 15 C 1.50692 * 109.47371 * 288.10763 * 14 4 3 16 16 C 1.39868 * 126.04013 * 97.93898 * 15 14 4 17 17 C 1.50702 * 125.89896 * 359.95755 * 16 15 14 18 18 N 1.30834 * 108.20451 * 179.97438 * 16 15 14 19 19 N 1.40087 * 108.20812 * 359.97438 * 18 16 15 20 20 C 1.46491 * 126.04245 * 179.97438 * 19 18 16 21 21 C 1.50702 * 109.47438 * 90.02876 * 20 19 18 22 22 O 1.20828 * 119.99470 * 359.97438 * 21 20 19 23 23 O 1.34222 * 120.00452 * 180.02562 * 21 20 19 24 24 C 1.45204 * 117.00214 * 180.02562 * 23 21 20 25 25 C 1.52994 * 109.47345 * 179.97438 * 24 23 21 26 26 C 1.34949 * 107.91926 * 359.76143 * 19 18 16 27 27 C 1.50707 * 126.12686 * 180.23755 * 26 19 18 28 28 H 1.07999 * 119.99995 * 359.97438 * 1 2 3 29 29 H 1.08005 * 120.00031 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99786 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47997 * 6.18520 * 3 2 1 32 32 H 1.09002 * 109.46940 * 246.18521 * 3 2 1 33 33 H 1.09004 * 109.47345 * 195.83035 * 5 4 3 34 34 H 1.09005 * 109.47216 * 315.82685 * 5 4 3 35 35 H 0.97001 * 119.99736 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47526 * 48.11192 * 14 4 3 37 37 H 1.09006 * 109.47064 * 168.10810 * 14 4 3 38 38 H 1.09004 * 109.46845 * 90.00249 * 17 16 15 39 39 H 1.09001 * 109.47191 * 210.00128 * 17 16 15 40 40 H 1.09003 * 109.46999 * 329.99804 * 17 16 15 41 41 H 1.09006 * 109.47531 * 210.03141 * 20 19 18 42 42 H 1.09003 * 109.47600 * 330.02651 * 20 19 18 43 43 H 1.09002 * 109.46414 * 299.99560 * 24 23 21 44 44 H 1.09004 * 109.47378 * 59.98823 * 24 23 21 45 45 H 1.08998 * 109.47115 * 299.99855 * 25 24 23 46 46 H 1.09001 * 109.47250 * 59.99835 * 25 24 23 47 47 H 1.09004 * 109.46849 * 179.97438 * 25 24 23 48 48 H 1.08998 * 109.47222 * 270.17289 * 27 26 19 49 49 H 1.09001 * 109.46565 * 30.17444 * 27 26 19 50 50 H 1.08997 * 109.46692 * 150.16984 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0165 1.3204 1.1178 5 6 2.3277 1.5561 2.3937 6 6 1.6208 0.2964 2.8233 7 1 1.7050 -0.6001 2.2271 8 6 0.8667 0.2886 3.9775 9 7 0.7637 1.3805 4.7032 10 14 -0.0101 -1.2728 4.5096 11 1 0.2630 -2.3530 3.5279 12 1 0.4824 -1.6852 5.8484 13 1 -1.4722 -1.0214 4.5758 14 6 4.0713 2.3185 0.8966 15 6 4.9970 1.8385 -0.1912 16 6 4.9479 2.2126 -1.5380 17 6 3.9576 3.1667 -2.1545 18 7 5.9098 1.5909 -2.1704 19 7 6.6031 0.8007 -1.2444 20 6 7.7533 -0.0587 -1.5349 21 6 9.0258 0.7308 -1.3657 22 8 8.9767 1.8924 -1.0367 23 8 10.2135 0.1440 -1.5816 24 6 11.3972 0.9649 -1.3992 25 6 12.6464 0.1298 -1.6871 26 6 6.0270 0.9746 -0.0365 27 6 6.4520 0.3206 1.2531 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3603 2.1307 0.1107 32 1 2.6044 1.4123 -0.9402 33 1 3.0563 1.8409 3.1528 34 1 1.5992 2.3576 2.2706 35 1 0.2334 1.3747 5.5154 36 1 3.6197 3.2646 0.5982 37 1 4.6362 2.4603 1.8180 38 1 4.3535 4.1812 -2.1084 39 1 3.7862 2.8905 -3.1949 40 1 3.0168 3.1185 -1.6061 41 1 7.7571 -0.9054 -0.8483 42 1 7.6853 -0.4228 -2.5601 43 1 11.3606 1.8124 -2.0837 44 1 11.4325 1.3287 -0.3722 45 1 12.6828 -0.7174 -1.0023 46 1 12.6114 -0.2342 -2.7139 47 1 13.5350 0.7463 -1.5506 48 1 5.9222 -0.6244 1.3730 49 1 7.5258 0.1348 1.2295 50 1 6.2154 0.9785 2.0892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430102607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:00 Heat of formation + Delta-G solvation = 17.807277 kcal Electronic energy + Delta-G solvation = -29591.643812 eV Core-core repulsion = 25621.795354 eV Total energy + Delta-G solvation = -3969.848458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43233 -40.50898 -37.17629 -36.84316 -34.20325 -32.92850 -32.57355 -32.23755 -31.45852 -29.95777 -28.16422 -26.80155 -26.38345 -25.22610 -23.70162 -23.10437 -21.54600 -20.71733 -19.38483 -19.21869 -18.85117 -18.22951 -17.03665 -16.94115 -16.29392 -15.97032 -15.25872 -14.84450 -14.68459 -14.37886 -14.14407 -13.77597 -13.63387 -13.49402 -13.44033 -13.18681 -13.10219 -12.94132 -12.70953 -12.36262 -12.26278 -12.15703 -12.08553 -11.98044 -11.86808 -11.58116 -11.28206 -11.13052 -10.92794 -10.91859 -10.84569 -10.67052 -10.42802 -10.23820 -10.10683 -9.88279 -9.16882 -8.90341 -8.43752 -8.18219 -7.98758 -7.17995 -5.93056 -3.90871 1.69048 1.84354 2.24227 2.74502 2.98599 3.26424 3.35877 3.42831 3.47269 4.26103 4.35110 4.51049 4.52572 4.57306 4.77148 4.83312 4.86472 4.98431 5.19934 5.22422 5.25977 5.35374 5.43277 5.49323 5.54313 5.69424 5.74448 5.75311 5.78577 5.92931 6.01786 6.03168 6.05250 6.10168 6.22642 6.29938 6.34441 6.47353 6.59379 6.75339 6.91006 7.12743 7.29058 7.39820 7.42201 7.49708 7.68556 7.91546 7.94248 8.19471 8.30904 8.64631 9.16173 9.71551 11.17829 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.002744 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.465759 B =10199.867590 C =11057.080775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C 0.090 3.910 4 N -0.528 5.528 5 C 0.192 3.808 6 C -0.486 4.486 7 H 0.068 0.932 8 C 0.053 3.947 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.131 3.869 15 C -0.207 4.207 16 C 0.090 3.910 17 C -0.077 4.077 18 N -0.299 5.299 19 N -0.375 5.375 20 C 0.151 3.849 21 C 0.441 3.559 22 O -0.485 6.485 23 O -0.359 6.359 24 C 0.062 3.938 25 C -0.152 4.152 26 C 0.113 3.887 27 C -0.087 4.087 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.025 0.975 34 H -0.007 1.007 35 H 0.258 0.742 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.054 0.946 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.991 -2.042 -13.688 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.117 4.117 3 C -0.037 4.037 4 N -0.253 5.253 5 C 0.068 3.932 6 C -0.525 4.525 7 H 0.086 0.914 8 C -0.147 4.147 9 N -0.544 5.544 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.213 1.213 14 C 0.002 3.998 15 C -0.217 4.217 16 C -0.077 4.077 17 C -0.136 4.136 18 N -0.119 5.119 19 N -0.159 5.159 20 C 0.027 3.973 21 C 0.281 3.719 22 O -0.370 6.370 23 O -0.276 6.276 24 C -0.011 4.011 25 C -0.209 4.209 26 C -0.011 4.011 27 C -0.146 4.146 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.011 0.989 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.073 0.927 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.851 -2.330 -14.524 23.911 hybrid contribution -1.116 0.207 1.296 1.723 sum 17.734 -2.123 -13.228 22.226 Atomic orbital electron populations 1.23409 0.95962 1.00422 1.04697 1.22504 0.95117 0.97942 0.96126 1.21147 0.93607 0.94684 0.94289 1.62097 1.12436 1.47161 1.03574 1.19815 0.92554 0.96553 0.84329 1.21244 1.27522 0.97015 1.06709 0.91393 1.24938 0.97003 0.96001 0.96799 1.69966 1.41550 1.27116 1.15757 0.86554 0.79368 0.83853 0.78332 1.19765 1.21330 1.21302 1.20287 0.92009 0.92682 0.94864 1.19726 1.01444 1.05554 0.95025 1.22185 0.95393 0.97376 0.92753 1.20295 0.96276 0.96334 1.00686 1.77222 1.09690 1.10398 1.14633 1.47642 1.24464 1.37589 1.06162 1.20814 0.78687 0.90806 1.07010 1.24166 0.85849 0.87449 0.74460 1.90750 1.87384 1.17461 1.41397 1.86475 1.14931 1.45135 1.81020 1.23062 0.82091 0.93683 1.02295 1.21812 0.94916 1.00910 1.03275 1.20772 0.94645 0.97968 0.87719 1.20431 0.99875 1.01968 0.92281 0.89588 0.89762 0.88304 0.95369 0.91630 0.95686 0.98887 0.93267 0.95090 0.90832 0.90667 0.91041 0.90021 0.84839 0.84755 0.91169 0.91067 0.91316 0.91400 0.90121 0.89288 0.92662 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.93 14.15 29.01 0.41 -3.52 16 2 C -0.10 -1.93 6.85 -36.03 -0.25 -2.18 16 3 C 0.09 1.74 4.80 -4.98 -0.02 1.72 16 4 N -0.53 -10.96 4.38 -238.97 -1.05 -12.01 16 5 C 0.19 4.84 4.76 -4.98 -0.02 4.82 16 6 C -0.49 -13.16 7.92 -34.44 -0.27 -13.44 16 7 H 0.07 1.84 6.15 -52.49 -0.32 1.52 16 8 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.13 2.37 4.92 -4.98 -0.02 2.34 16 15 C -0.21 -3.49 4.99 -105.06 -0.52 -4.01 16 16 C 0.09 1.46 6.52 -82.41 -0.54 0.92 16 17 C -0.08 -1.01 9.63 36.01 0.35 -0.66 16 18 N -0.30 -4.90 12.58 33.67 0.42 -4.47 16 19 N -0.37 -5.46 3.10 -58.31 -0.18 -5.64 16 20 C 0.15 1.53 6.65 -5.20 -0.03 1.49 16 21 C 0.44 5.12 8.03 36.01 0.29 5.41 16 22 O -0.48 -7.55 16.18 -18.75 -0.30 -7.85 16 23 O -0.36 -3.44 10.22 -39.24 -0.40 -3.84 16 24 C 0.06 0.49 6.19 37.15 0.23 0.72 16 25 C -0.15 -0.77 10.29 37.15 0.38 -0.39 16 26 C 0.11 1.77 6.93 -82.26 -0.57 1.20 16 27 C -0.09 -1.15 9.68 36.01 0.35 -0.80 16 28 H 0.09 1.61 7.85 -52.49 -0.41 1.20 16 29 H 0.08 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.10 1.95 8.02 -52.49 -0.42 1.53 16 31 H 0.03 0.56 7.39 -51.93 -0.38 0.18 16 32 H 0.07 1.15 4.66 -51.93 -0.24 0.91 16 33 H 0.03 0.67 7.65 -51.93 -0.40 0.27 16 34 H -0.01 -0.18 7.73 -51.93 -0.40 -0.58 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.03 0.55 7.44 -51.93 -0.39 0.16 16 37 H 0.07 1.35 6.94 -51.93 -0.36 0.98 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.07 5.84 -51.93 -0.30 0.76 16 41 H 0.13 0.94 7.68 -51.93 -0.40 0.54 16 42 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 44 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.05 0.60 7.74 -51.93 -0.40 0.20 16 50 H 0.09 1.27 7.32 -51.93 -0.38 0.89 16 LS Contribution 410.41 15.07 6.18 6.18 Total: -1.00 -34.22 410.41 -8.13 -42.35 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.17 Total: -0.50 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.35 Total: -5.00 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.07 Total: -48.04 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.70 Total: -11.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.22 -8.13 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430102607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.154 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds