Wall clock time and date at job start Tue Mar 31 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.46929 * 2 1 4 4 C 1.34772 * 120.00133 * 84.00303 * 3 2 1 5 5 O 1.21686 * 119.99641 * 184.76742 * 4 3 2 6 6 C 1.46722 * 120.00037 * 4.49091 * 4 3 2 7 7 O 1.35340 * 126.63927 * 358.44319 * 6 4 3 8 8 C 1.33675 * 107.67717 * 179.83868 * 7 6 4 9 9 C 1.50702 * 125.41596 * 180.18408 * 8 7 6 10 10 C 1.53000 * 109.46726 * 120.31320 * 9 8 7 11 11 C 1.53003 * 109.46933 * 240.30846 * 9 8 7 12 12 N 1.30611 * 109.15473 * 0.43180 * 8 7 6 13 13 C 1.33687 * 108.99727 * 359.72993 * 12 8 7 14 14 C 1.50703 * 126.27403 * 179.97438 * 13 12 8 15 15 C 1.46503 * 119.99831 * 264.00228 * 3 2 1 16 16 H 1.09004 * 110.64362 * 1.69123 * 15 3 2 17 17 C 1.55158 * 110.72031 * 125.02166 * 15 3 2 18 18 C 1.54915 * 101.57816 * 153.86371 * 17 15 3 19 19 N 1.47418 * 104.83454 * 322.98954 * 18 17 15 20 20 C 1.36939 * 125.64950 * 204.16099 * 19 18 17 21 21 H 1.08001 * 119.99899 * 150.66123 * 20 19 18 22 22 C 1.38814 * 119.99673 * 330.66145 * 20 19 18 23 23 N 1.31624 * 119.99597 * 163.42843 * 22 20 19 24 24 Si 1.86798 * 120.00424 * 343.42501 * 22 20 19 25 25 H 1.48499 * 109.46867 * 87.91219 * 24 22 20 26 26 H 1.48497 * 109.47500 * 207.91591 * 24 22 20 27 27 H 1.48500 * 109.46963 * 327.91617 * 24 22 20 28 28 C 1.47024 * 108.70546 * 24.13311 * 19 18 17 29 29 H 1.09003 * 109.47320 * 300.00172 * 1 2 3 30 30 H 1.08997 * 109.47336 * 60.00188 * 1 2 3 31 31 H 1.08997 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47344 * 240.00210 * 2 1 3 33 33 H 1.08997 * 109.47336 * 119.99812 * 2 1 3 34 34 H 1.08999 * 109.47743 * 0.30889 * 9 8 7 35 35 H 1.09004 * 109.47557 * 60.00046 * 10 9 8 36 36 H 1.09005 * 109.46988 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47467 * 299.99491 * 10 9 8 38 38 H 1.08997 * 109.47121 * 60.00641 * 11 9 8 39 39 H 1.08999 * 109.47352 * 180.02562 * 11 9 8 40 40 H 1.08998 * 109.47456 * 300.00446 * 11 9 8 41 41 H 1.09003 * 109.46928 * 270.04470 * 14 13 12 42 42 H 1.08997 * 109.46955 * 30.04320 * 14 13 12 43 43 H 1.08998 * 109.47398 * 150.04411 * 14 13 12 44 44 H 1.08994 * 111.00781 * 271.94052 * 17 15 3 45 45 H 1.09006 * 111.00100 * 35.79258 * 17 15 3 46 46 H 1.09008 * 110.36192 * 204.14809 * 18 17 15 47 47 H 1.08995 * 110.45964 * 81.88224 * 18 17 15 48 48 H 0.96997 * 119.99636 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.88090 * 239.52186 * 28 19 18 50 50 H 1.09000 * 109.88765 * 118.35087 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1279 2.0573 1.1608 5 8 2.4502 3.2307 1.1533 6 6 1.8529 1.3800 2.4329 7 8 1.4536 0.0971 2.5951 8 6 1.3192 -0.1235 3.9067 9 6 0.8942 -1.4261 4.5342 10 6 1.9975 -1.9255 5.4692 11 6 -0.3929 -1.2113 5.3331 12 7 1.6096 0.9712 4.5573 13 6 1.9443 1.9229 3.6802 14 6 2.3481 3.3370 4.0097 15 6 2.3874 2.0277 -1.2618 16 1 2.2119 1.3569 -2.1030 17 6 1.6107 3.3584 -1.4447 18 6 2.5709 4.1551 -2.3629 19 7 3.9228 3.7967 -1.8970 20 6 5.0504 4.5566 -2.0591 21 1 5.8510 4.4958 -1.3367 22 6 5.1644 5.4051 -3.1518 23 7 6.0686 6.3616 -3.1507 24 14 4.0346 5.1895 -4.6237 25 1 2.7877 5.9667 -4.4085 26 1 4.7178 5.6787 -5.8480 27 1 3.7002 3.7516 -4.7845 28 6 3.8599 2.4885 -1.2289 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7178 -2.1654 3.7529 35 1 2.1738 -1.1862 6.2506 36 1 1.6899 -2.8674 5.9235 37 1 2.9144 -2.0785 4.9002 38 1 -1.1789 -0.8555 4.6670 39 1 -0.7001 -2.1533 5.7874 40 1 -0.2166 -0.4720 6.1144 41 1 1.4622 3.9716 4.0336 42 1 2.8363 3.3578 4.9840 43 1 3.0378 3.7044 3.2499 44 1 0.6528 3.1874 -1.9356 45 1 1.4735 3.8650 -0.4894 46 1 2.4022 5.2261 -2.2500 47 1 2.4370 3.8585 -3.4031 48 1 6.1485 6.9543 -3.9144 49 1 4.1957 2.5832 -0.1963 50 1 4.4850 1.7706 -1.7599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033980721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:05 Heat of formation + Delta-G solvation = 19.950726 kcal Electronic energy + Delta-G solvation = -30710.406495 eV Core-core repulsion = 26740.650983 eV Total energy + Delta-G solvation = -3969.755511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.61685 -40.12281 -37.17661 -36.34858 -35.86477 -34.97036 -32.46289 -31.09901 -30.65800 -29.42685 -28.33585 -27.64903 -27.22396 -24.80858 -24.08962 -23.42511 -22.14586 -21.06543 -20.69366 -20.56767 -19.36366 -17.36497 -17.10018 -16.85722 -16.65787 -15.81006 -15.35332 -15.02235 -14.90780 -14.69745 -14.40808 -13.99774 -13.63448 -13.63068 -13.50264 -13.29110 -13.09156 -12.99223 -12.76414 -12.63521 -12.47396 -12.16604 -12.07814 -12.02704 -11.78372 -11.75323 -11.53628 -11.38372 -11.27452 -11.08252 -10.99259 -10.89283 -10.83842 -10.68410 -10.17578 -9.99678 -9.60787 -9.32849 -8.93826 -8.61715 -8.46339 -6.80514 -5.87894 -3.25977 0.75139 2.20083 2.28994 2.94456 3.13449 3.40295 3.50051 3.53915 3.62209 4.29476 4.48120 4.54855 4.60419 4.63116 4.70851 4.81858 5.00188 5.06189 5.15374 5.18484 5.20029 5.25520 5.30492 5.36806 5.39464 5.43891 5.47261 5.48509 5.55725 5.62000 5.66080 5.66998 5.75821 5.77460 5.85802 5.92574 5.94263 6.07412 6.11876 6.27904 6.35280 6.37009 6.59565 6.70989 6.90015 6.99398 7.30085 7.52237 7.91881 8.13406 8.41690 8.93220 9.76030 10.29740 11.28903 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.003072 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.926705 B = 9111.892349 C = 9747.138133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.596 5.596 4 C 0.601 3.399 5 O -0.482 6.482 6 C -0.111 4.111 7 O -0.181 6.181 8 C 0.209 3.791 9 C 0.002 3.998 10 C -0.145 4.145 11 C -0.144 4.144 12 N -0.482 5.482 13 C 0.078 3.922 14 C -0.082 4.082 15 C 0.134 3.866 16 H 0.096 0.904 17 C -0.146 4.146 18 C 0.117 3.883 19 N -0.600 5.600 20 C -0.235 4.235 21 H 0.086 0.914 22 C 0.025 3.975 23 N -0.912 5.912 24 Si 0.890 3.110 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.273 1.273 28 C 0.132 3.868 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.263 0.737 49 H 0.041 0.959 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 -19.873 14.800 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.328 5.328 4 C 0.387 3.613 5 O -0.358 6.358 6 C -0.165 4.165 7 O -0.069 6.069 8 C 0.004 3.996 9 C -0.018 4.018 10 C -0.202 4.202 11 C -0.201 4.201 12 N -0.211 5.211 13 C -0.045 4.045 14 C -0.139 4.139 15 C 0.032 3.968 16 H 0.114 0.886 17 C -0.185 4.185 18 C -0.009 4.009 19 N -0.327 5.327 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.174 4.174 23 N -0.556 5.556 24 Si 0.720 3.280 25 H -0.213 1.213 26 H -0.231 1.231 27 H -0.199 1.199 28 C 0.006 3.994 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.712 -19.046 15.277 28.506 hybrid contribution -0.621 -0.271 -1.736 1.864 sum -15.333 -19.317 13.541 28.135 Atomic orbital electron populations 1.22160 0.95679 1.02042 1.02374 1.21812 0.94709 0.82297 1.03559 1.47864 1.64566 1.14054 1.06311 1.16457 0.78427 0.85714 0.80680 1.90949 1.46179 1.13709 1.84932 1.23133 1.12750 0.82911 0.97753 1.84678 1.65380 1.28644 1.28161 1.26571 0.97529 0.97572 0.77965 1.19722 0.97135 0.87246 0.97658 1.21851 0.97230 1.01820 0.99322 1.21844 0.94855 1.03082 1.00365 1.70251 1.17582 0.99174 1.34142 1.22064 0.97636 0.97626 0.87219 1.20402 1.02753 0.87201 1.03502 1.22273 0.96834 0.94419 0.83310 0.88604 1.23220 0.97145 0.95806 1.02332 1.21915 0.85493 0.98539 0.94914 1.44484 1.03439 1.16794 1.68013 1.18589 0.94914 1.17423 1.05386 0.89689 1.25258 0.96932 0.97644 0.97553 1.69798 1.36624 1.18029 1.31158 0.86799 0.79885 0.77996 0.83292 1.21280 1.23090 1.19903 1.21600 0.91925 0.88340 0.97577 0.92810 0.92150 0.91565 0.89778 0.89477 0.88325 0.91047 0.90878 0.92115 0.92206 0.90879 0.91064 0.90109 0.90652 0.88286 0.92149 0.88609 0.92465 0.95921 0.92749 0.94098 0.95247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.83 37.16 0.37 -1.16 16 2 C 0.10 1.06 5.71 -4.04 -0.02 1.03 16 3 N -0.60 -8.71 2.55 -165.53 -0.42 -9.14 16 4 C 0.60 9.86 6.68 -12.84 -0.09 9.77 16 5 O -0.48 -9.49 11.19 5.20 0.06 -9.43 16 6 C -0.11 -1.60 6.60 -36.84 -0.24 -1.84 16 7 O -0.18 -2.16 6.60 4.41 0.03 -2.13 16 8 C 0.21 2.27 6.82 -12.80 -0.09 2.18 16 9 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 10 C -0.14 -0.86 9.17 37.16 0.34 -0.52 16 11 C -0.14 -0.82 9.18 37.16 0.34 -0.48 16 12 N -0.48 -6.25 11.26 -7.07 -0.08 -6.33 16 13 C 0.08 1.12 7.16 -82.47 -0.59 0.53 16 14 C -0.08 -1.08 9.86 36.01 0.35 -0.72 16 15 C 0.13 2.27 3.44 -66.09 -0.23 2.04 16 16 H 0.10 1.41 7.80 -51.93 -0.41 1.00 16 17 C -0.15 -2.69 6.39 -24.58 -0.16 -2.84 16 18 C 0.12 2.67 4.83 -2.53 -0.01 2.65 16 19 N -0.60 -15.37 3.07 -170.07 -0.52 -15.89 16 20 C -0.24 -7.02 10.56 -15.06 -0.16 -7.18 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.02 0.75 5.46 -17.43 -0.10 0.66 16 23 N -0.91 -29.04 13.97 55.49 0.78 -28.26 16 24 Si 0.89 23.28 24.45 -169.99 -4.16 19.12 16 25 H -0.29 -7.27 7.03 56.52 0.40 -6.87 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.27 -6.92 6.50 56.52 0.37 -6.56 16 28 C 0.13 2.82 6.51 -3.06 -0.02 2.80 16 29 H 0.05 0.57 7.37 -51.93 -0.38 0.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 33 H 0.09 0.91 5.20 -51.93 -0.27 0.64 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 1.50 6.50 -51.93 -0.34 1.16 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.10 1.91 5.64 -51.93 -0.29 1.62 16 46 H 0.06 1.40 7.57 -51.92 -0.39 1.00 16 47 H 0.02 0.53 5.14 -51.93 -0.27 0.26 16 48 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 49 H 0.04 0.94 6.42 -51.93 -0.33 0.60 16 50 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -34.87 387.03 -7.28 -42.15 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.18 Total: -2.54 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.61 Total: 6.62 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.25 Total: -59.62 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.16 Total: 19.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.87 -7.28 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033980721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.097 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds