Wall clock time and date at job start Tue Mar 31 2020 19:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21281 * 120.00193 * 2 1 4 4 N 1.34776 * 119.99640 * 179.97438 * 2 1 3 5 5 C 1.47432 * 125.64879 * 359.95758 * 4 2 1 6 6 C 1.54911 * 104.83016 * 204.16450 * 5 4 2 7 7 C 1.55397 * 101.66705 * 323.07685 * 6 5 4 8 8 H 1.08999 * 110.69504 * 277.04918 * 7 6 5 9 9 C 1.50698 * 110.85471 * 153.70191 * 7 6 5 10 10 O 1.21285 * 119.99825 * 5.08167 * 9 7 6 11 11 N 1.34784 * 120.00334 * 185.08607 * 9 7 6 12 12 C 1.46798 * 119.57493 * 359.72239 * 11 9 7 13 13 C 1.54562 * 107.01969 * 233.11993 * 12 11 9 14 14 C 1.52729 * 108.22618 * 301.36423 * 13 12 11 15 15 C 1.53014 * 110.80279 * 64.07000 * 14 13 12 16 16 H 1.08992 * 111.38663 * 68.75891 * 15 14 13 17 17 C 1.45114 * 119.57555 * 179.97438 * 11 9 7 18 18 H 1.09001 * 109.97323 * 11.00111 * 17 11 9 19 19 C 1.54422 * 111.60891 * 248.63034 * 17 11 9 20 20 C 1.55469 * 102.03390 * 204.05518 * 19 17 11 21 21 N 1.47113 * 107.60285 * 20.47727 * 20 19 17 22 22 C 1.36937 * 125.76640 * 183.35301 * 21 20 19 23 23 H 1.08009 * 120.00071 * 173.30701 * 22 21 20 24 24 C 1.38808 * 120.00220 * 353.30663 * 22 21 20 25 25 N 1.31615 * 120.00036 * 6.39040 * 24 22 21 26 26 Si 1.86806 * 120.00288 * 186.38897 * 24 22 21 27 27 H 1.48501 * 109.46934 * 94.98861 * 26 24 22 28 28 H 1.48496 * 109.47040 * 214.98617 * 26 24 22 29 29 H 1.48501 * 109.46915 * 334.98908 * 26 24 22 30 30 C 1.47022 * 125.65149 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46673 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.46832 * 60.00113 * 1 2 3 34 34 H 1.08997 * 110.36419 * 323.00416 * 5 4 2 35 35 H 1.08997 * 110.36160 * 85.32970 * 5 4 2 36 36 H 1.08998 * 111.00534 * 81.06588 * 6 5 4 37 37 H 1.08999 * 111.00186 * 204.87647 * 6 5 4 38 38 H 1.09009 * 109.83035 * 351.59612 * 12 11 9 39 39 H 1.08995 * 109.83015 * 112.54579 * 12 11 9 40 40 H 1.08998 * 109.50083 * 181.88687 * 13 12 11 41 41 H 1.08999 * 109.98973 * 61.12541 * 13 12 11 42 42 H 1.09001 * 109.21243 * 303.72988 * 14 13 12 43 43 H 1.09000 * 109.17793 * 184.38250 * 14 13 12 44 44 H 1.08999 * 110.81028 * 321.66463 * 19 17 11 45 45 H 1.08995 * 110.80953 * 85.18566 * 19 17 11 46 46 H 1.09005 * 109.10101 * 261.29582 * 20 19 17 47 47 H 1.08998 * 110.44952 * 140.42739 * 20 19 17 48 48 H 0.97001 * 120.00345 * 179.97438 * 25 24 22 49 49 H 1.08999 * 109.87960 * 298.32727 * 30 4 2 50 50 H 1.08999 * 109.88081 * 59.32989 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5729 -2.5104 0.0020 6 6 2.6545 -3.4345 0.6151 7 6 3.9582 -2.8226 0.0314 8 1 4.1434 -3.1986 -0.9748 9 6 5.1331 -3.1045 0.9321 10 8 4.9938 -3.8124 1.9070 11 7 6.3388 -2.5699 0.6543 12 6 6.4984 -1.7193 -0.5315 13 6 7.6783 -2.2960 -1.3465 14 6 8.9198 -2.2935 -0.4568 15 6 8.7330 -3.2292 0.7393 16 1 8.7095 -4.2732 0.4274 17 6 7.4637 -2.8470 1.5281 18 1 7.2053 -3.6427 2.2268 19 6 7.9058 -1.5866 2.3031 20 6 9.3904 -1.9117 2.6308 21 7 9.8370 -2.9495 1.6886 22 6 11.0651 -3.5552 1.6883 23 1 11.2589 -4.3829 1.0221 24 6 12.0611 -3.1055 2.5443 25 7 11.7895 -2.1829 3.4428 26 14 13.7868 -3.8099 2.4211 27 1 14.6201 -2.9307 1.5621 28 1 14.3868 -3.8896 3.7771 29 1 13.7254 -5.1691 1.8262 30 6 3.6439 -1.3121 0.0011 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.6734 -2.5188 0.6175 35 1 1.3400 -2.8224 -1.0161 36 1 2.6496 -3.3732 1.7033 37 1 2.5221 -4.4643 0.2833 38 1 5.5924 -1.7548 -1.1367 39 1 6.6999 -0.6927 -0.2257 40 1 7.8543 -1.6724 -2.2229 41 1 7.4528 -3.3159 -1.6579 42 1 9.1000 -1.2810 -0.0955 43 1 9.7790 -2.6243 -1.0402 44 1 7.8402 -0.7007 1.6714 45 1 7.3137 -1.4619 3.2096 46 1 9.4565 -2.2853 3.6527 47 1 10.0085 -1.0206 2.5214 48 1 12.4853 -1.8689 4.0412 49 1 4.0611 -0.8648 -0.9011 50 1 4.0640 -0.8281 0.8828 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049867021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:03 Heat of formation + Delta-G solvation = -31.343158 kcal Electronic energy + Delta-G solvation = -30625.367792 eV Core-core repulsion = 26653.388011 eV Total energy + Delta-G solvation = -3971.979781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97498 -39.85820 -38.29380 -37.07343 -35.30737 -32.72507 -32.39939 -32.00365 -30.22269 -29.52436 -28.77787 -27.99088 -25.13822 -24.33099 -23.89229 -22.42421 -21.97275 -20.20388 -19.82284 -19.54152 -18.23561 -17.46139 -17.32012 -16.89067 -16.54733 -15.71245 -15.48267 -15.10924 -14.76458 -14.44042 -14.26880 -13.96396 -13.93836 -13.50951 -13.40313 -13.24700 -13.05167 -12.87189 -12.79149 -12.47892 -12.28622 -12.11650 -11.93431 -11.83663 -11.66253 -11.45316 -11.21559 -11.01848 -10.99456 -10.78808 -10.64664 -10.49389 -10.21763 -10.08457 -10.08241 -9.66770 -9.61923 -9.55141 -9.00716 -8.62050 -8.31354 -6.86416 -5.73012 -3.06505 2.32710 2.50788 2.71259 3.09651 3.39801 3.45133 3.47202 3.96457 4.11067 4.39856 4.47924 4.48528 4.72575 4.78756 4.84086 4.90846 4.95843 5.04482 5.10396 5.11932 5.25892 5.34658 5.37292 5.42355 5.46977 5.47268 5.59067 5.60890 5.62639 5.69009 5.85018 5.85233 5.88949 5.98316 6.09768 6.18011 6.29240 6.34629 6.50599 6.58185 6.71503 6.94481 7.05306 7.14917 7.51820 7.57788 7.61755 7.81499 7.84139 8.21348 8.26792 9.19393 9.79212 10.45706 11.38629 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.002681 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.104872 B =10441.303292 C =10552.643727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.525 3.475 3 O -0.544 6.544 4 N -0.620 5.620 5 C 0.097 3.903 6 C -0.113 4.113 7 C -0.123 4.123 8 H 0.112 0.888 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.589 5.589 12 C 0.100 3.900 13 C -0.132 4.132 14 C -0.130 4.130 15 C 0.158 3.842 16 H 0.059 0.941 17 C 0.129 3.871 18 H 0.101 0.899 19 C -0.152 4.152 20 C 0.181 3.819 21 N -0.597 5.597 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.006 4.006 25 N -0.919 5.919 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.116 3.884 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.253 0.747 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.821 0.426 -11.017 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.315 3.685 3 O -0.421 6.421 4 N -0.356 5.356 5 C -0.026 4.026 6 C -0.151 4.151 7 C -0.145 4.145 8 H 0.130 0.870 9 C 0.306 3.694 10 O -0.414 6.414 11 N -0.320 5.320 12 C -0.023 4.023 13 C -0.171 4.171 14 C -0.170 4.170 15 C 0.049 3.951 16 H 0.077 0.923 17 C 0.025 3.975 18 H 0.119 0.881 19 C -0.192 4.192 20 C 0.056 3.944 21 N -0.322 5.322 22 C -0.356 4.356 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.566 5.566 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.007 4.007 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.365 0.720 -10.334 24.648 hybrid contribution 1.083 -0.288 -0.126 1.128 sum -21.282 0.432 -10.460 23.718 Atomic orbital electron populations 1.21889 0.91227 1.04424 1.05359 1.20545 0.90409 0.81933 0.75650 1.90754 1.70686 1.30662 1.50043 1.48618 1.07049 1.06190 1.73715 1.22475 0.97249 0.81576 1.01290 1.22741 0.90929 0.98975 1.02446 1.22431 0.94844 0.96194 1.01025 0.87020 1.20178 0.83614 0.79967 0.85639 1.90704 1.83900 1.38077 1.28750 1.47640 1.09091 1.48611 1.26659 1.22257 0.99392 0.94601 0.86023 1.22125 0.95904 1.00962 0.98107 1.22117 0.95995 1.01700 0.97221 1.21340 0.87291 0.96516 0.89943 0.92317 1.21827 0.84955 0.98886 0.91808 0.88146 1.23255 1.00045 0.96683 0.99174 1.21313 0.86878 0.92503 0.93689 1.44686 1.10841 1.44668 1.31978 1.19028 0.86391 1.11426 1.18749 0.90435 1.24819 0.98160 0.98911 0.98336 1.69967 1.31990 1.32746 1.21876 0.86125 0.84627 0.78245 0.76927 1.21646 1.21786 1.20645 1.22002 0.81139 0.94366 1.03199 0.90367 0.88637 0.88646 0.89877 0.90786 0.88986 0.88984 0.90103 0.90754 0.91332 0.91725 0.91799 0.92077 0.92271 0.91970 0.93722 0.93461 0.93710 0.90264 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.19 36.01 0.37 -0.61 16 2 C 0.53 5.48 7.96 -10.98 -0.09 5.39 16 3 O -0.54 -8.23 17.43 5.56 0.10 -8.13 16 4 N -0.62 -5.68 3.33 -170.52 -0.57 -6.24 16 5 C 0.10 0.57 6.39 -2.52 -0.02 0.56 16 6 C -0.11 -0.90 6.15 -24.45 -0.15 -1.05 16 7 C -0.12 -1.17 2.38 -89.81 -0.21 -1.38 16 8 H 0.11 0.82 7.71 -51.93 -0.40 0.42 16 9 C 0.52 7.34 6.92 -10.98 -0.08 7.26 16 10 O -0.54 -9.61 15.09 5.55 0.08 -9.52 16 11 N -0.59 -8.57 2.72 -164.31 -0.45 -9.02 16 12 C 0.10 1.16 5.35 -3.06 -0.02 1.15 16 13 C -0.13 -1.64 6.15 -26.05 -0.16 -1.80 16 14 C -0.13 -2.23 5.11 -26.86 -0.14 -2.36 16 15 C 0.16 3.15 3.60 -66.30 -0.24 2.91 16 16 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 17 C 0.13 2.38 3.05 -67.27 -0.20 2.18 16 18 H 0.10 2.10 6.94 -51.93 -0.36 1.74 16 19 C -0.15 -2.94 6.19 -24.67 -0.15 -3.09 16 20 C 0.18 4.39 5.20 -2.40 -0.01 4.37 16 21 N -0.60 -14.83 2.91 -161.57 -0.47 -15.30 16 22 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 23 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 24 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 25 N -0.92 -26.89 10.38 55.49 0.58 -26.32 16 26 Si 0.91 22.03 29.56 -169.99 -5.02 17.01 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C 0.12 1.17 5.15 -3.07 -0.02 1.15 16 31 H 0.08 0.27 6.09 -51.93 -0.32 -0.05 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.35 6.94 -51.93 -0.36 -0.01 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.71 4.33 -51.92 -0.22 0.48 16 39 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.19 7.21 -51.93 -0.37 0.81 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.06 6.91 -51.93 -0.36 0.70 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.04 1.21 7.51 -51.93 -0.39 0.82 16 47 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 48 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.08 0.74 6.71 -51.93 -0.35 0.39 16 50 H 0.08 0.94 7.81 -51.93 -0.41 0.54 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -34.54 378.31 -9.47 -44.02 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.06 Total: -0.23 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.37 Total: 8.03 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.91 Total: -56.88 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.54 -9.47 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049867021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.675 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds