Wall clock time and date at job start Tue Mar 31 2020 19:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21291 * 119.99374 * 2 1 4 4 N 1.34768 * 120.00588 * 180.02562 * 2 1 3 5 5 C 1.47430 * 125.64888 * 0.03824 * 4 2 1 6 6 C 1.54908 * 104.83361 * 204.09409 * 5 4 2 7 7 C 1.55398 * 101.66813 * 323.07485 * 6 5 4 8 8 C 1.53003 * 110.69479 * 277.05192 * 7 6 5 9 9 C 1.50694 * 110.85498 * 153.70147 * 7 6 5 10 10 O 1.21281 * 120.00204 * 5.08365 * 9 7 6 11 11 N 1.34777 * 120.00221 * 185.08861 * 9 7 6 12 12 C 1.46502 * 120.00426 * 180.02562 * 11 9 7 13 13 H 1.08997 * 110.55850 * 36.08089 * 12 11 9 14 14 C 1.54842 * 110.62998 * 158.98955 * 12 11 9 15 15 C 1.56243 * 103.26465 * 117.35761 * 14 12 11 16 16 H 1.09000 * 115.81477 * 159.81008 * 15 14 12 17 17 C 1.55846 * 105.83416 * 289.25865 * 15 14 12 18 18 C 1.54847 * 103.44570 * 71.58698 * 17 15 14 19 19 C 1.55846 * 103.44792 * 0.02562 * 18 17 15 20 20 H 1.08991 * 115.56283 * 159.56597 * 19 18 17 21 21 N 1.50233 * 101.75190 * 33.16902 * 19 18 17 22 22 C 1.36935 * 130.84313 * 125.81319 * 21 19 18 23 23 H 1.08008 * 119.99801 * 346.84471 * 22 21 19 24 24 C 1.38804 * 120.00449 * 166.84401 * 22 21 19 25 25 N 1.31626 * 119.99949 * 159.69375 * 24 22 21 26 26 Si 1.86799 * 120.00109 * 339.69232 * 24 22 21 27 27 H 1.48501 * 109.46865 * 86.37199 * 26 24 22 28 28 H 1.48506 * 109.47403 * 206.36690 * 26 24 22 29 29 H 1.48501 * 109.47310 * 326.36892 * 26 24 22 30 30 C 1.47025 * 125.65069 * 179.97438 * 4 2 1 31 31 H 1.09008 * 109.46798 * 239.99904 * 1 2 3 32 32 H 1.08994 * 109.47543 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.47254 * 120.00524 * 1 2 3 34 34 H 1.09000 * 110.36506 * 322.93759 * 5 4 2 35 35 H 1.09002 * 110.36148 * 85.14254 * 5 4 2 36 36 H 1.08995 * 111.00085 * 81.06652 * 6 5 4 37 37 H 1.09005 * 111.00019 * 204.87737 * 6 5 4 38 38 H 1.09002 * 109.46762 * 174.82145 * 8 7 6 39 39 H 1.09003 * 109.46864 * 294.82108 * 8 7 6 40 40 H 1.09000 * 109.47496 * 54.82514 * 8 7 6 41 41 H 0.97005 * 119.99770 * 0.02562 * 11 9 7 42 42 H 1.08997 * 110.62687 * 236.97918 * 14 12 11 43 43 H 1.09002 * 110.62707 * 359.97438 * 14 12 11 44 44 H 1.09006 * 110.62126 * 313.09953 * 17 15 14 45 45 H 1.08992 * 110.76172 * 190.14492 * 17 15 14 46 46 H 1.08998 * 110.62892 * 241.51405 * 18 17 15 47 47 H 1.08999 * 110.76376 * 118.55532 * 18 17 15 48 48 H 0.97007 * 119.99909 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.88637 * 298.39436 * 30 4 2 50 50 H 1.09005 * 109.88062 * 59.41027 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5732 -2.5103 -0.0019 6 6 2.6548 -3.4356 0.6093 7 6 3.9585 -2.8223 0.0271 8 6 4.2186 -3.3471 -1.3864 9 6 5.1333 -3.1060 0.9272 10 8 4.9940 -3.8159 1.9006 11 7 6.3389 -2.5707 0.6506 12 6 7.4812 -2.8468 1.5254 13 1 7.4368 -3.8688 1.9017 14 6 8.8139 -2.5984 0.7772 15 6 9.4714 -1.4384 1.5917 16 1 10.5481 -1.3223 1.4676 17 6 8.6189 -0.1696 1.2887 18 6 7.2952 -0.4357 2.0468 19 6 7.5284 -1.8288 2.7053 20 1 6.8848 -2.0617 3.5535 21 7 9.0024 -1.7885 2.9927 22 6 9.6936 -1.9902 4.1575 23 1 9.1678 -2.0103 5.1008 24 6 11.0697 -2.1688 4.1260 25 7 11.7847 -1.9654 5.2123 26 14 11.9070 -2.6978 2.5422 27 1 12.2160 -1.4994 1.7215 28 1 13.1666 -3.4155 2.8639 29 1 11.0040 -3.5990 1.7821 30 6 3.6440 -1.3117 -0.0011 31 1 -0.3633 -0.5139 0.8901 32 1 -0.3634 1.0276 0.0005 33 1 -0.3634 -0.5139 -0.8899 34 1 0.6735 -2.5202 0.6134 35 1 1.3386 -2.8193 -1.0205 36 1 2.6497 -3.3765 1.6976 37 1 2.5225 -4.4647 0.2753 38 1 5.0836 -2.8368 -1.8100 39 1 4.4127 -4.4189 -1.3461 40 1 3.3446 -3.1593 -2.0103 41 1 6.4503 -2.0024 -0.1276 42 1 9.4317 -3.4963 0.7848 43 1 8.6250 -2.2701 -0.2449 44 1 8.4362 -0.0765 0.2180 45 1 9.1081 0.7254 1.6727 46 1 6.4560 -0.4745 1.3523 47 1 7.1265 0.3253 2.8087 48 1 12.7464 -2.0905 5.1904 49 1 4.0606 -0.8629 -0.9028 50 1 4.0646 -0.8292 0.8813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096300021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:09 Heat of formation + Delta-G solvation = -11.638399 kcal Electronic energy + Delta-G solvation = -30853.316559 eV Core-core repulsion = 26882.191241 eV Total energy + Delta-G solvation = -3971.125318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.04206 -39.93437 -38.86132 -37.30432 -34.19833 -33.32866 -32.36013 -30.28603 -30.08305 -29.74424 -29.30153 -28.04841 -26.83795 -24.32862 -23.83500 -22.56534 -21.46154 -20.27389 -19.72885 -19.46742 -18.82506 -17.65140 -17.02487 -16.77828 -16.41506 -15.87690 -15.63935 -15.42652 -15.15431 -14.67714 -14.33063 -14.15073 -13.75186 -13.46787 -13.15007 -13.12039 -12.98240 -12.95735 -12.72611 -12.62738 -12.56262 -12.24726 -12.20965 -12.04704 -11.78119 -11.38898 -11.29390 -11.18879 -11.12109 -11.10677 -10.88253 -10.43845 -10.27841 -10.19810 -9.85132 -9.66519 -9.57281 -9.33636 -9.00725 -8.85779 -8.69168 -7.20101 -5.91717 -3.19399 2.33971 2.51764 2.72307 3.21591 3.27158 3.43012 3.47764 3.87395 4.11454 4.42043 4.47266 4.53017 4.63548 4.71665 4.78359 4.83109 4.88146 4.98717 5.07252 5.18195 5.19414 5.22186 5.34534 5.36167 5.41383 5.45421 5.48529 5.59998 5.62206 5.64068 5.71533 5.75842 5.82185 5.86278 5.89561 5.91669 5.98047 6.22811 6.30064 6.40354 6.43342 6.61278 6.69711 6.86668 6.90233 7.15701 7.35722 7.61808 7.84995 8.29584 8.32808 8.72097 9.64764 10.25333 11.25011 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.003120 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.377984 B = 8972.891239 C = 9387.658525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.543 6.543 4 N -0.618 5.618 5 C 0.099 3.901 6 C -0.109 4.109 7 C -0.096 4.096 8 C -0.135 4.135 9 C 0.526 3.474 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.127 3.873 13 H 0.089 0.911 14 C -0.141 4.141 15 C 0.112 3.888 16 H 0.099 0.901 17 C -0.127 4.127 18 C -0.130 4.130 19 C 0.138 3.862 20 H 0.094 0.906 21 N -0.604 5.604 22 C -0.222 4.222 23 H 0.096 0.904 24 C 0.016 3.984 25 N -0.914 5.914 26 Si 0.879 3.121 27 H -0.288 1.288 28 H -0.304 1.304 29 H -0.263 1.263 30 C 0.119 3.881 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.395 0.605 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.262 0.738 49 H 0.076 0.924 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.123 -1.762 -17.366 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.420 6.420 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.147 4.147 7 C -0.100 4.100 8 C -0.192 4.192 9 C 0.310 3.690 10 O -0.408 6.408 11 N -0.361 5.361 12 C 0.021 3.979 13 H 0.107 0.893 14 C -0.180 4.180 15 C 0.006 3.994 16 H 0.116 0.884 17 C -0.166 4.166 18 C -0.169 4.169 19 C 0.029 3.971 20 H 0.112 0.888 21 N -0.327 5.327 22 C -0.349 4.349 23 H 0.114 0.886 24 C -0.182 4.182 25 N -0.559 5.559 26 Si 0.711 3.289 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.188 1.188 30 C -0.004 4.004 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.230 0.770 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.649 -1.688 -16.354 27.184 hybrid contribution 0.752 -0.093 -1.231 1.445 sum -20.897 -1.781 -17.585 27.370 Atomic orbital electron populations 1.21897 0.91221 1.05511 1.04185 1.20534 0.90423 0.81912 0.75758 1.90762 1.70818 1.30614 1.49776 1.48501 1.06925 1.06121 1.73855 1.22444 0.97180 0.81617 1.01173 1.22788 0.90693 0.98913 1.02316 1.21918 0.95122 0.95946 0.97011 1.21810 1.02571 1.01943 0.92911 1.19984 0.83580 0.80032 0.85369 1.90726 1.83988 1.37660 1.28402 1.46254 1.09439 1.50735 1.29655 1.22659 0.83301 1.00921 0.90978 0.89264 1.23416 0.96321 1.00729 0.97576 1.23682 0.97570 0.92348 0.85829 0.88363 1.22838 0.96778 0.98936 0.98044 1.22911 0.96263 0.98694 0.99070 1.23164 0.87111 0.92608 0.94225 0.88814 1.47127 1.00498 1.80196 1.04893 1.18649 0.89999 1.42890 0.83333 0.88621 1.24828 0.95777 1.00987 0.96563 1.69818 1.06029 1.51874 1.28136 0.87036 0.78721 0.78855 0.84284 1.21692 1.23281 1.18800 1.21928 0.81374 0.93903 1.03151 0.89336 0.88876 0.89452 0.90021 0.90914 0.88902 0.89036 0.91633 0.91331 0.91300 0.77035 0.90443 0.91939 0.92693 0.91888 0.92474 0.92217 0.92763 0.90536 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.33 36.00 0.34 -0.64 16 2 C 0.52 5.47 7.96 -10.99 -0.09 5.38 16 3 O -0.54 -8.25 17.41 5.55 0.10 -8.15 16 4 N -0.62 -5.57 3.33 -170.51 -0.57 -6.14 16 5 C 0.10 0.58 6.38 -2.53 -0.02 0.56 16 6 C -0.11 -0.86 5.64 -24.45 -0.14 -1.00 16 7 C -0.10 -0.86 0.76 -153.69 -0.12 -0.98 16 8 C -0.13 -0.89 8.37 37.16 0.31 -0.58 16 9 C 0.53 6.85 6.39 -10.99 -0.07 6.78 16 10 O -0.53 -9.11 15.49 5.56 0.09 -9.03 16 11 N -0.71 -9.08 3.50 -51.37 -0.18 -9.26 16 12 C 0.13 2.16 3.08 -65.41 -0.20 1.96 16 13 H 0.09 1.72 7.67 -51.93 -0.40 1.32 16 14 C -0.14 -2.39 6.03 -24.02 -0.14 -2.54 16 15 C 0.11 2.26 3.65 -61.65 -0.22 2.04 16 16 H 0.10 2.18 3.77 -51.93 -0.20 1.98 16 17 C -0.13 -2.17 6.47 -24.24 -0.16 -2.32 16 18 C -0.13 -2.21 6.32 -24.24 -0.15 -2.36 16 19 C 0.14 2.71 5.31 -62.77 -0.33 2.38 16 20 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 21 N -0.60 -14.31 2.84 -144.30 -0.41 -14.72 16 22 C -0.22 -6.31 10.95 -15.06 -0.16 -6.47 16 23 H 0.10 2.91 8.06 -52.48 -0.42 2.49 16 24 C 0.02 0.47 5.50 -17.43 -0.10 0.37 16 25 N -0.91 -28.47 13.97 55.49 0.78 -27.69 16 26 Si 0.88 21.99 24.78 -169.99 -4.21 17.78 16 27 H -0.29 -6.97 6.33 56.52 0.36 -6.61 16 28 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 29 H -0.26 -6.16 5.07 56.52 0.29 -5.87 16 30 C 0.12 1.18 5.97 -3.06 -0.02 1.16 16 31 H 0.09 0.38 7.85 -51.92 -0.41 -0.03 16 32 H 0.09 0.56 8.12 -51.93 -0.42 0.13 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.35 7.48 -51.93 -0.39 -0.04 16 35 H 0.07 0.30 7.73 -51.93 -0.40 -0.10 16 36 H 0.09 0.94 7.49 -51.93 -0.39 0.55 16 37 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 38 H 0.06 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.36 7.46 -51.93 -0.39 -0.03 16 41 H 0.40 4.05 7.70 -40.82 -0.31 3.73 16 42 H 0.08 1.43 6.37 -51.93 -0.33 1.09 16 43 H 0.06 0.84 7.38 -51.93 -0.38 0.46 16 44 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.06 0.82 6.45 -51.93 -0.33 0.49 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 49 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 50 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -35.84 379.87 -8.19 -44.03 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.23 Total: 3.73 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -1.28 Total: 3.74 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.38 Total: -57.81 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.21 Total: 17.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.84 -8.19 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096300021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.388 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds