Wall clock time and date at job start Tue Mar 31 2020 19:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34421 * 124.35207 * 2 1 4 4 O 1.21280 * 124.94466 * 359.52979 * 3 2 1 5 5 C 1.51290 * 110.11520 * 179.79987 * 3 2 1 6 6 C 1.54786 * 104.11792 * 343.40759 * 5 3 2 7 7 C 1.46765 * 124.34954 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.24552 * 78.03588 * 7 2 1 9 9 C 1.53007 * 110.24518 * 316.12711 * 7 2 1 10 10 C 1.50697 * 109.47310 * 174.75161 * 9 7 2 11 11 O 1.21284 * 120.00016 * 0.86476 * 10 9 7 12 12 N 1.34771 * 120.00188 * 180.86716 * 10 9 7 13 13 C 1.46496 * 120.00059 * 180.02562 * 12 10 9 14 14 C 1.54319 * 111.69362 * 298.87565 * 13 12 10 15 15 C 1.54193 * 104.34929 * 261.64186 * 14 13 12 16 16 C 1.55059 * 102.50424 * 320.99842 * 15 14 13 17 17 C 1.54320 * 103.93353 * 39.43821 * 16 15 14 18 18 H 1.09006 * 111.69218 * 97.20653 * 17 16 15 19 19 C 1.53778 * 109.06157 * 222.02847 * 17 16 15 20 20 N 1.47210 * 106.38066 * 94.89273 * 19 17 16 21 21 C 1.36940 * 126.70299 * 211.24645 * 20 19 17 22 22 H 1.07993 * 120.00183 * 13.57991 * 21 20 19 23 23 C 1.38813 * 119.99691 * 193.58317 * 21 20 19 24 24 N 1.31612 * 120.00198 * 8.02014 * 23 21 20 25 25 Si 1.86801 * 119.99592 * 188.02042 * 23 21 20 26 26 H 1.48499 * 109.47332 * 94.96756 * 25 23 21 27 27 H 1.48511 * 109.46785 * 214.96572 * 25 23 21 28 28 H 1.48500 * 109.47268 * 334.96510 * 25 23 21 29 29 C 1.47216 * 106.59510 * 31.28100 * 20 19 17 30 30 H 1.09007 * 109.46763 * 356.87886 * 1 2 3 31 31 H 1.08997 * 109.46975 * 116.87646 * 1 2 3 32 32 H 1.08991 * 109.47316 * 236.87974 * 1 2 3 33 33 H 1.08995 * 110.48510 * 102.19648 * 5 3 2 34 34 H 1.08995 * 110.48192 * 224.84121 * 5 3 2 35 35 H 1.09005 * 111.16711 * 266.93101 * 6 5 3 36 36 H 1.09003 * 110.86418 * 143.13905 * 6 5 3 37 37 H 1.09007 * 109.46692 * 294.75207 * 9 7 2 38 38 H 1.08998 * 109.47111 * 54.74946 * 9 7 2 39 39 H 0.97009 * 119.99798 * 359.97438 * 12 10 9 40 40 H 1.09008 * 110.53061 * 21.41547 * 14 13 12 41 41 H 1.08996 * 110.53449 * 144.17625 * 14 13 12 42 42 H 1.08996 * 111.25303 * 202.42121 * 15 14 13 43 43 H 1.09001 * 110.21131 * 79.10474 * 15 14 13 44 44 H 1.09003 * 110.53527 * 280.82396 * 16 15 14 45 45 H 1.09005 * 110.53251 * 158.05174 * 16 15 14 46 46 H 1.09008 * 110.07448 * 214.12277 * 19 17 16 47 47 H 1.09001 * 110.07759 * 335.66068 * 19 17 16 48 48 H 0.97001 * 120.00280 * 180.02562 * 24 23 21 49 49 H 1.09002 * 110.07220 * 209.49070 * 29 20 19 50 50 H 1.08995 * 110.07379 * 87.94806 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1098 0.0000 4 8 1.7947 2.2442 -0.0082 5 6 3.6899 0.7377 0.0050 6 6 3.7008 -0.7487 0.4366 7 6 2.2931 -1.2117 0.0005 8 1 2.3309 -1.6432 -0.9997 9 6 1.7374 -2.2323 0.9959 10 6 2.5210 -3.5152 0.8902 11 8 3.4440 -3.5993 0.1079 12 7 2.1961 -4.5691 1.6648 13 6 2.9582 -5.8160 1.5623 14 6 2.8671 -6.4257 0.1476 15 6 1.7739 -7.5066 0.2669 16 6 2.0563 -8.1168 1.6642 17 6 2.4247 -6.8971 2.5348 18 1 1.5700 -6.5387 3.1086 19 6 3.6199 -7.2623 3.4308 20 7 4.8258 -6.8046 2.7214 21 6 6.0703 -7.3740 2.7711 22 1 6.1962 -8.3609 3.1911 23 6 7.1699 -6.6825 2.2817 24 7 7.0467 -5.4241 1.9163 25 14 8.8246 -7.5381 2.1418 26 1 8.9918 -8.0704 0.7656 27 1 9.9100 -6.5670 2.4322 28 1 8.8874 -8.6568 3.1163 29 6 4.4329 -5.6147 1.9487 30 1 -0.3633 1.0262 0.0560 31 1 -0.3633 -0.4646 -0.9166 32 1 -0.3633 -0.5615 0.8606 33 1 4.1156 0.8510 -0.9920 34 1 4.2355 1.3471 0.7253 35 1 3.8264 -0.8445 1.5151 36 1 4.4754 -1.3016 -0.0949 37 1 1.8231 -1.8365 2.0080 38 1 0.6892 -2.4271 0.7695 39 1 1.4580 -4.5017 2.2907 40 1 2.5920 -5.6625 -0.5806 41 1 3.8112 -6.8955 -0.1278 42 1 1.8761 -8.2598 -0.5142 43 1 0.7856 -7.0478 0.2354 44 1 2.8903 -8.8169 1.6142 45 1 1.1651 -8.6093 2.0534 46 1 3.5359 -6.7547 4.3919 47 1 3.6602 -8.3414 3.5795 48 1 7.8150 -4.9410 1.5739 49 1 5.0467 -5.5317 1.0518 50 1 4.5405 -4.7191 2.5605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098972706.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:49 Heat of formation + Delta-G solvation = -44.083704 kcal Electronic energy + Delta-G solvation = -30709.908583 eV Core-core repulsion = 26737.376331 eV Total energy + Delta-G solvation = -3972.532252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77440 -40.00365 -38.24913 -36.55808 -34.40394 -33.40145 -32.84137 -31.56400 -31.21517 -29.14329 -27.88091 -26.76457 -25.35197 -24.73708 -24.17395 -21.97958 -20.96015 -20.59363 -19.49948 -19.32037 -18.79121 -17.37756 -16.87803 -16.53567 -16.08897 -15.91620 -15.19122 -15.10457 -14.54685 -14.45091 -14.00040 -13.92662 -13.75200 -13.56600 -13.46257 -13.25599 -12.94342 -12.90784 -12.53785 -12.41366 -12.25070 -11.96536 -11.95280 -11.24198 -11.08688 -11.04173 -10.95391 -10.93792 -10.72607 -10.62898 -10.56607 -10.31693 -10.14358 -10.00492 -9.92971 -9.89646 -9.72388 -9.35003 -8.87763 -8.58119 -8.51826 -6.80500 -5.72811 -3.08888 2.47951 2.78895 2.96311 3.40048 3.45156 3.47582 3.51572 4.25479 4.39307 4.49736 4.60910 4.79128 4.91012 4.97176 5.05163 5.06416 5.13870 5.22479 5.26117 5.27810 5.36610 5.49711 5.52826 5.57806 5.67054 5.70012 5.78014 5.85832 5.90514 6.02482 6.04670 6.05440 6.11715 6.14949 6.27970 6.32748 6.34776 6.49769 6.63416 6.67598 6.77835 6.83075 6.94679 7.06622 7.44157 7.64569 7.80733 7.93849 8.05353 8.29544 8.60565 9.18618 9.80462 10.51397 11.39037 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012739 B = 0.003516 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.453546 B = 7961.824247 C = 9596.952021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.621 5.621 3 C 0.518 3.482 4 O -0.542 6.542 5 C -0.157 4.157 6 C -0.121 4.121 7 C 0.149 3.851 8 H 0.092 0.908 9 C -0.150 4.150 10 C 0.513 3.487 11 O -0.517 6.517 12 N -0.712 5.712 13 C 0.148 3.852 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.108 4.108 18 H 0.074 0.926 19 C 0.136 3.864 20 N -0.593 5.593 21 C -0.234 4.234 22 H 0.076 0.924 23 C -0.002 4.002 24 N -0.908 5.908 25 Si 0.908 3.092 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.178 3.822 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.391 0.609 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.013 0.987 47 H 0.045 0.955 48 H 0.254 0.746 49 H 0.090 0.910 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 4.508 -2.535 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.355 5.355 3 C 0.307 3.693 4 O -0.419 6.419 5 C -0.197 4.197 6 C -0.159 4.159 7 C 0.046 3.954 8 H 0.110 0.890 9 C -0.191 4.191 10 C 0.297 3.703 11 O -0.392 6.392 12 N -0.363 5.363 13 C 0.062 3.938 14 C -0.148 4.148 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.128 4.128 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.318 5.318 21 C -0.362 4.362 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.553 5.553 25 Si 0.739 3.261 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.052 3.948 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.594 5.094 -3.164 15.777 hybrid contribution 0.326 -0.414 0.418 0.672 sum -14.267 4.680 -2.746 15.264 Atomic orbital electron populations 1.21561 0.78525 1.03588 1.01536 1.48285 1.06374 1.07423 1.73416 1.21010 0.89717 0.84057 0.74522 1.90700 1.79000 1.21175 1.51036 1.22424 0.94000 0.98413 1.04826 1.22711 0.96310 0.93841 1.03007 1.21430 0.90189 0.84002 0.99807 0.88987 1.21963 1.00972 0.94286 1.01880 1.20130 0.84527 0.84381 0.81223 1.90774 1.28809 1.82780 1.36857 1.46002 1.35510 1.13124 1.41684 1.22072 0.95123 0.81827 0.94826 1.22459 0.99393 0.97037 0.95952 1.22447 0.98480 0.98130 0.97146 1.22455 1.00710 0.97092 0.94610 1.22832 0.98202 0.94997 0.96793 0.90807 1.21373 0.86804 0.97617 0.93287 1.44414 1.05123 1.31577 1.50644 1.18969 0.82222 0.98178 1.36835 0.90638 1.24874 0.97654 0.95584 1.01850 1.69943 1.29604 1.07940 1.47861 0.86167 0.83761 0.78370 0.77836 1.21551 1.21719 1.20597 1.21375 0.87547 0.88711 0.97213 0.90032 0.92134 0.91893 0.87729 0.88042 0.89982 0.87580 0.88500 0.88886 0.77521 0.91577 0.90382 0.92080 0.92613 0.90715 0.92476 0.96927 0.93630 0.93609 0.89196 0.96491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.41 59.85 0.62 1.37 16 2 N -0.62 -6.68 3.18 -172.70 -0.55 -7.23 16 3 C 0.52 6.70 8.02 -10.86 -0.09 6.61 16 4 O -0.54 -8.86 17.35 5.56 0.10 -8.77 16 5 C -0.16 -1.68 6.87 -26.65 -0.18 -1.86 16 6 C -0.12 -1.39 5.83 -25.02 -0.15 -1.54 16 7 C 0.15 1.61 2.93 -67.01 -0.20 1.41 16 8 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 9 C -0.15 -1.48 4.89 -27.88 -0.14 -1.62 16 10 C 0.51 7.28 6.93 -10.99 -0.08 7.20 16 11 O -0.52 -9.44 12.87 5.55 0.07 -9.36 16 12 N -0.71 -9.93 5.19 -45.69 -0.24 -10.17 16 13 C 0.15 2.59 0.92 -129.73 -0.12 2.47 16 14 C -0.11 -1.90 5.49 -25.42 -0.14 -2.04 16 15 C -0.12 -1.73 6.88 -25.02 -0.17 -1.90 16 16 C -0.11 -1.59 6.25 -24.95 -0.16 -1.75 16 17 C -0.11 -1.71 3.68 -88.53 -0.33 -2.03 16 18 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 19 C 0.14 2.69 6.57 -3.25 -0.02 2.67 16 20 N -0.59 -14.67 3.39 -171.13 -0.58 -15.25 16 21 C -0.23 -6.39 10.29 -15.06 -0.15 -6.54 16 22 H 0.08 2.00 7.84 -52.49 -0.41 1.58 16 23 C 0.00 -0.05 5.40 -17.43 -0.09 -0.15 16 24 N -0.91 -26.61 10.77 55.49 0.60 -26.01 16 25 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 C 0.18 4.20 3.72 -3.25 -0.01 4.19 16 30 H 0.08 0.75 7.54 -51.93 -0.39 0.36 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 7.29 -51.93 -0.38 0.03 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 36 H 0.11 1.38 7.70 -51.93 -0.40 0.98 16 37 H 0.10 0.88 8.00 -51.92 -0.42 0.47 16 38 H 0.09 0.70 7.13 -51.93 -0.37 0.33 16 39 H 0.39 4.15 8.29 -40.82 -0.34 3.82 16 40 H 0.07 1.15 6.65 -51.92 -0.35 0.80 16 41 H 0.08 1.59 7.61 -51.93 -0.40 1.20 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.22 7.56 -51.93 -0.39 0.82 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 47 H 0.05 0.87 7.58 -51.93 -0.39 0.47 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.09 2.49 6.15 -51.93 -0.32 2.17 16 50 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -33.87 384.86 -9.50 -43.37 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.28 Total: 4.26 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.40 Total: 6.50 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.77 Total: -58.66 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.87 -9.50 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098972706.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.713 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds