Wall clock time and date at job start Tue Mar 31 2020 19:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34755 * 124.29396 * 2 1 4 4 O 1.21278 * 125.12401 * 0.41278 * 3 2 1 5 5 C 1.51279 * 109.93299 * 180.39111 * 3 2 1 6 6 C 1.54639 * 104.31383 * 16.31194 * 5 3 2 7 7 C 1.46759 * 124.35574 * 180.02562 * 2 1 3 8 8 H 1.08997 * 110.31984 * 282.02283 * 7 2 1 9 9 C 1.53000 * 110.24269 * 43.98053 * 7 2 1 10 10 C 1.50702 * 109.47145 * 181.77523 * 9 7 2 11 11 O 1.21280 * 119.99903 * 5.79014 * 10 9 7 12 12 N 1.34774 * 120.00092 * 185.80044 * 10 9 7 13 13 C 1.46495 * 120.00185 * 179.97438 * 12 10 9 14 14 C 1.54187 * 111.61413 * 298.57851 * 13 12 10 15 15 C 1.56219 * 103.64862 * 260.33005 * 14 13 12 16 16 C 1.54853 * 103.17600 * 322.65625 * 15 14 13 17 17 C 1.54183 * 104.29917 * 37.76774 * 16 15 14 18 18 H 1.09004 * 112.24648 * 98.78692 * 17 16 15 19 19 C 1.53789 * 109.12737 * 223.08341 * 17 16 15 20 20 N 1.47216 * 106.35856 * 132.67163 * 19 17 16 21 21 C 1.36940 * 126.70190 * 148.74532 * 20 19 17 22 22 H 1.07999 * 120.00165 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99780 * 0.02562 * 21 20 19 24 24 N 1.31613 * 120.00190 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99870 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47105 * 90.00199 * 25 23 21 27 27 H 1.48502 * 109.47287 * 210.00331 * 25 23 21 28 28 H 1.48507 * 109.46994 * 330.00276 * 25 23 21 29 29 C 1.47219 * 106.60110 * 328.76903 * 20 19 17 30 30 H 1.08997 * 109.46565 * 274.89417 * 1 2 3 31 31 H 1.08997 * 109.47437 * 34.89415 * 1 2 3 32 32 H 1.08994 * 109.46611 * 154.90053 * 1 2 3 33 33 H 1.08997 * 110.48599 * 257.57305 * 5 3 2 34 34 H 1.08994 * 110.49049 * 135.05382 * 5 3 2 35 35 H 1.08999 * 110.96688 * 93.25689 * 6 5 3 36 36 H 1.09002 * 110.96713 * 217.01917 * 6 5 3 37 37 H 1.09001 * 109.46973 * 301.77376 * 9 7 2 38 38 H 1.09002 * 109.47331 * 61.77296 * 9 7 2 39 39 H 0.97003 * 119.99696 * 359.97438 * 12 10 9 40 40 H 1.09003 * 110.46093 * 20.29875 * 14 13 12 41 41 H 1.09001 * 110.46917 * 142.88168 * 14 13 12 42 42 H 1.09007 * 110.86502 * 204.05135 * 15 14 13 43 43 H 1.08994 * 110.39254 * 81.04081 * 15 14 13 44 44 H 1.09001 * 110.46463 * 279.06334 * 16 15 14 45 45 H 1.09001 * 110.46832 * 156.47446 * 16 15 14 46 46 H 1.09005 * 110.08238 * 13.44554 * 19 17 16 47 47 H 1.09001 * 110.12427 * 251.92160 * 19 17 16 48 48 H 0.97003 * 120.00106 * 179.97438 * 24 23 21 49 49 H 1.09004 * 110.07446 * 272.01289 * 29 20 19 50 50 H 1.08995 * 110.13081 * 150.47822 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2243 1.1133 0.0000 4 8 1.7980 2.2486 0.0071 5 6 3.6898 0.7381 -0.0097 6 6 3.7011 -0.7482 -0.4363 7 6 2.2932 -1.2116 -0.0005 8 1 2.3311 -1.6446 0.9990 9 6 1.7392 -2.2311 -0.9978 10 6 2.5759 -3.4837 -0.9528 11 8 3.4559 -3.5957 -0.1258 12 7 2.3464 -4.4793 -1.8317 13 6 3.1601 -5.6968 -1.7883 14 6 4.6499 -5.3936 -2.0455 15 6 4.8470 -5.7642 -3.5503 16 6 3.9519 -7.0156 -3.7258 17 6 2.7126 -6.7223 -2.8566 18 1 1.8740 -6.3508 -3.4455 19 6 2.3365 -7.9900 -2.0712 20 7 2.1194 -7.5657 -0.6784 21 6 1.2497 -8.1228 0.2208 22 1 1.1772 -7.7224 1.2212 23 6 0.4614 -9.2023 -0.1536 24 7 0.5501 -9.6906 -1.3726 25 14 -0.7255 -9.9618 1.0728 26 1 -2.0426 -9.2834 0.9723 27 1 -0.8891 -11.4071 0.7734 28 1 -0.1883 -9.7988 2.4476 29 6 3.0194 -6.4251 -0.4410 30 1 -0.3632 0.0877 1.0239 31 1 -0.3634 0.8429 -0.5879 32 1 -0.3632 -0.9306 -0.4359 33 1 4.1194 0.8525 0.9855 34 1 4.2346 1.3463 -0.7317 35 1 3.8269 -0.8435 -1.5148 36 1 4.4755 -1.3009 0.0956 37 1 0.7091 -2.4726 -0.7360 38 1 1.7695 -1.8099 -2.0027 39 1 1.6424 -4.3898 -2.4930 40 1 4.8631 -4.3417 -1.8553 41 1 5.2810 -6.0296 -1.4247 42 1 5.8901 -6.0032 -3.7579 43 1 4.5038 -4.9510 -4.1898 44 1 4.4673 -7.9063 -3.3665 45 1 3.6650 -7.1355 -4.7705 46 1 3.1491 -8.7149 -2.1193 47 1 1.4230 -8.4250 -2.4766 48 1 -0.0006 -10.4451 -1.6341 49 1 3.9933 -6.7806 -0.1043 50 1 2.5881 -5.7554 0.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098972707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:53 Heat of formation + Delta-G solvation = -41.674639 kcal Electronic energy + Delta-G solvation = -30493.715906 eV Core-core repulsion = 26521.288119 eV Total energy + Delta-G solvation = -3972.427787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.87782 -40.07697 -38.27067 -36.66005 -34.53831 -33.47648 -32.94705 -31.58952 -31.16184 -29.41349 -27.80508 -26.82902 -25.48902 -24.76779 -24.25426 -22.18355 -21.15661 -20.31416 -19.57448 -19.38866 -18.84826 -17.53013 -17.00937 -16.58831 -16.15582 -15.83559 -15.38651 -15.23027 -14.93349 -14.50175 -14.23641 -14.08413 -13.81962 -13.66893 -13.46884 -13.21077 -13.03007 -12.64895 -12.54453 -12.47095 -12.41196 -12.05009 -11.68475 -11.52846 -11.27552 -11.22733 -11.16137 -11.02614 -10.83835 -10.76669 -10.62410 -10.32383 -10.27464 -10.00634 -9.97417 -9.79255 -9.58817 -9.44605 -8.93406 -8.78187 -8.61095 -6.89597 -5.67739 -3.12449 2.38271 2.71074 2.79882 3.35961 3.41801 3.42624 3.44156 4.13116 4.25115 4.44336 4.45633 4.75118 4.76914 4.89233 4.95757 4.98964 5.04298 5.14070 5.20550 5.22618 5.34661 5.44617 5.50815 5.53014 5.55260 5.64361 5.73732 5.79357 5.80522 5.85574 5.91696 5.96147 6.01627 6.10657 6.21684 6.27374 6.35974 6.43119 6.51918 6.63793 6.72727 6.80489 6.86933 7.12047 7.42281 7.57608 7.72840 7.82383 7.96356 8.35821 8.43844 9.17749 9.78337 10.45766 11.33043 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003282 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.550781 B = 8529.655715 C =10087.477255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.621 5.621 3 C 0.517 3.483 4 O -0.538 6.538 5 C -0.157 4.157 6 C -0.120 4.120 7 C 0.149 3.851 8 H 0.094 0.906 9 C -0.153 4.153 10 C 0.517 3.483 11 O -0.535 6.535 12 N -0.703 5.703 13 C 0.161 3.839 14 C -0.116 4.116 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.112 4.112 18 H 0.073 0.927 19 C 0.139 3.861 20 N -0.598 5.598 21 C -0.216 4.216 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.136 3.864 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.397 0.603 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.012 0.988 47 H 0.122 0.878 48 H 0.252 0.748 49 H 0.025 0.975 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 15.126 -4.554 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.355 5.355 3 C 0.306 3.694 4 O -0.415 6.415 5 C -0.197 4.197 6 C -0.158 4.158 7 C 0.045 3.955 8 H 0.112 0.888 9 C -0.194 4.194 10 C 0.302 3.698 11 O -0.413 6.413 12 N -0.353 5.353 13 C 0.074 3.926 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.132 4.132 18 H 0.092 0.908 19 C 0.014 3.986 20 N -0.321 5.321 21 C -0.344 4.344 22 H 0.095 0.905 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.009 3.991 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.030 0.970 47 H 0.140 0.860 48 H 0.063 0.937 49 H 0.043 0.957 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.227 15.431 -3.887 16.749 hybrid contribution -1.133 -0.518 0.269 1.275 sum 4.093 14.913 -3.618 15.882 Atomic orbital electron populations 1.21598 0.78208 1.03093 1.02186 1.48365 1.06493 1.07205 1.73463 1.21019 0.89514 0.84088 0.74810 1.90711 1.79077 1.20990 1.50709 1.22382 0.94347 0.98130 1.04824 1.22664 0.96543 0.94079 1.02510 1.21419 0.89955 0.84100 1.00024 0.88784 1.21996 1.01293 0.94439 1.01648 1.20130 0.84294 0.84198 0.81154 1.90697 1.32997 1.80844 1.36728 1.46013 1.37155 1.17051 1.35082 1.21775 0.89613 0.83174 0.98052 1.22873 0.95078 1.01682 0.95843 1.22761 0.99252 0.97714 0.96443 1.22429 0.95654 0.97853 0.99210 1.22990 0.96755 0.97934 0.95550 0.90840 1.22075 1.02470 0.90197 0.83904 1.44584 1.43778 1.33761 1.10022 1.19098 1.12647 1.09936 0.92706 0.90534 1.24753 1.00400 0.98563 0.97038 1.69593 1.43165 1.27320 1.17087 0.86067 0.80879 0.78410 0.80146 1.21665 1.21616 1.20735 1.21671 0.94101 0.89681 0.93638 0.92446 0.90924 0.90542 0.87749 0.88128 0.90286 0.87938 0.88254 0.88656 0.76938 0.91107 0.90931 0.92108 0.92315 0.91070 0.92066 0.97035 0.86025 0.93691 0.95698 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.72 59.85 0.64 1.42 16 2 N -0.62 -6.31 3.19 -172.61 -0.55 -6.86 16 3 C 0.52 6.12 8.04 -10.71 -0.09 6.04 16 4 O -0.54 -8.37 17.68 5.56 0.10 -8.27 16 5 C -0.16 -1.35 6.85 -26.74 -0.18 -1.54 16 6 C -0.12 -1.04 5.75 -25.09 -0.14 -1.19 16 7 C 0.15 1.44 2.95 -67.01 -0.20 1.24 16 8 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 9 C -0.15 -1.42 4.88 -27.88 -0.14 -1.56 16 10 C 0.52 6.72 6.52 -10.99 -0.07 6.65 16 11 O -0.54 -8.42 12.43 5.56 0.07 -8.35 16 12 N -0.70 -9.64 5.23 -45.83 -0.24 -9.88 16 13 C 0.16 2.66 0.94 -129.89 -0.12 2.53 16 14 C -0.12 -1.71 5.75 -24.38 -0.14 -1.85 16 15 C -0.12 -1.57 6.92 -24.03 -0.17 -1.74 16 16 C -0.11 -1.64 6.38 -25.14 -0.16 -1.80 16 17 C -0.11 -1.93 3.67 -88.69 -0.33 -2.25 16 18 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 19 C 0.14 3.18 5.77 -3.24 -0.02 3.16 16 20 N -0.60 -14.85 3.39 -171.11 -0.58 -15.43 16 21 C -0.22 -5.89 10.34 -15.06 -0.16 -6.05 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 24 N -0.92 -25.95 10.08 55.49 0.56 -25.39 16 25 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.14 2.88 6.00 -3.23 -0.02 2.86 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.64 8.05 -51.93 -0.42 0.23 16 32 H 0.08 0.52 6.28 -51.93 -0.33 0.19 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 37 H 0.10 0.85 6.69 -51.93 -0.35 0.50 16 38 H 0.10 0.72 8.08 -51.93 -0.42 0.31 16 39 H 0.40 4.62 8.28 -40.82 -0.34 4.28 16 40 H 0.07 1.02 6.69 -51.93 -0.35 0.68 16 41 H 0.07 1.14 7.18 -51.93 -0.37 0.77 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.11 7.17 -51.93 -0.37 0.74 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.01 0.28 7.12 -51.93 -0.37 -0.09 16 47 H 0.12 3.16 5.45 -51.93 -0.28 2.88 16 48 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.03 0.55 7.14 -51.93 -0.37 0.18 16 50 H 0.05 1.07 6.73 -51.93 -0.35 0.72 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -32.65 380.87 -9.32 -41.97 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.02 Total: 4.32 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.38 Total: 5.50 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.81 Total: -57.56 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.17 Total: -16.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.65 -9.32 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098972707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.299 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds