Wall clock time and date at job start Tue Mar 31 2020 18:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35674 * 117.00313 * 2 1 4 4 C 1.38915 * 119.68501 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11377 * 179.97438 * 4 3 2 6 6 C 1.38833 * 118.48301 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.35659 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47224 * 89.99658 * 7 6 5 9 9 C 1.46910 * 110.99877 * 293.95371 * 8 7 6 10 10 C 1.50699 * 109.46947 * 165.21895 * 9 8 7 11 11 H 1.08001 * 120.00084 * 358.37825 * 10 9 8 12 12 C 1.37880 * 120.00109 * 178.38224 * 10 9 8 13 13 N 1.31521 * 119.99399 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47460 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47277 * 120.00185 * 14 12 10 17 17 H 1.48498 * 109.47593 * 239.99901 * 14 12 10 18 18 C 1.46905 * 111.00048 * 170.00353 * 8 7 6 19 19 C 1.53001 * 109.46611 * 284.47808 * 18 8 7 20 20 N 1.46901 * 109.46959 * 185.27602 * 19 18 8 21 21 C 1.47023 * 110.99688 * 293.63516 * 20 19 18 22 22 C 1.53093 * 109.25520 * 177.61022 * 21 20 19 23 23 O 1.43010 * 109.26528 * 56.84817 * 22 21 20 24 24 C 1.43019 * 113.73680 * 301.33360 * 23 22 21 25 25 C 1.47008 * 111.00183 * 170.00341 * 20 19 18 26 26 C 1.38050 * 119.28832 * 359.97438 * 6 5 4 27 27 N 1.31963 * 120.83571 * 0.03198 * 26 6 5 28 28 H 1.08998 * 109.47244 * 59.99880 * 1 2 3 29 29 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46765 * 299.99893 * 1 2 3 31 31 H 1.07999 * 120.44618 * 0.27917 * 4 3 2 32 32 H 1.07996 * 120.76127 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47033 * 209.99692 * 7 6 5 34 34 H 1.09001 * 109.46677 * 329.99632 * 7 6 5 35 35 H 1.09001 * 109.46635 * 285.21466 * 9 8 7 36 36 H 1.08992 * 109.46995 * 45.21547 * 9 8 7 37 37 H 0.97006 * 119.99316 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46946 * 44.47851 * 18 8 7 39 39 H 1.09005 * 109.47067 * 164.48038 * 18 8 7 40 40 H 1.09001 * 109.47226 * 305.27063 * 19 18 8 41 41 H 1.08999 * 109.46992 * 65.27269 * 19 18 8 42 42 H 1.08995 * 109.50413 * 297.54390 * 21 20 19 43 43 H 1.08994 * 109.50740 * 57.67453 * 21 20 19 44 44 H 1.09003 * 109.51005 * 296.90965 * 22 21 20 45 45 H 1.09003 * 109.54485 * 176.80780 * 22 21 20 46 46 H 1.09002 * 109.50488 * 298.72688 * 24 23 22 47 47 H 1.08996 * 109.54252 * 178.62375 * 24 23 22 48 48 H 1.09004 * 109.50842 * 302.32489 * 25 20 19 49 49 H 1.09005 * 109.51143 * 62.40817 * 25 20 19 50 50 H 1.07998 * 119.58265 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8769 5.0197 -0.0017 8 7 4.0800 5.4641 -1.3870 9 6 5.0746 4.6248 -2.0687 10 6 4.9974 4.8612 -3.5550 11 1 4.2636 5.5449 -3.9556 12 6 5.8635 4.2046 -4.4034 13 7 6.7573 3.3723 -3.9154 14 14 5.7674 4.4971 -6.2458 15 1 4.6852 5.4716 -6.5365 16 1 7.0631 5.0382 -6.7293 17 1 5.4780 3.2147 -6.9363 18 6 4.4657 6.8808 -1.4343 19 6 3.2363 7.7529 -1.1715 20 7 3.5937 9.1674 -1.3431 21 6 4.5475 9.5988 -0.3108 22 6 4.9377 11.0577 -0.5618 23 8 3.7576 11.8653 -0.5799 24 6 2.8069 11.4734 -1.5739 25 6 2.3952 10.0186 -1.3332 26 6 1.8771 3.5096 -0.0010 27 7 1.3186 2.3140 -0.0004 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0228 0.3694 -0.0036 32 1 5.1254 2.5945 0.0000 33 1 3.2186 5.7204 0.5118 34 1 4.8375 4.9806 0.5119 35 1 6.0720 4.8807 -1.7113 36 1 4.8708 3.5753 -1.8566 37 1 7.3669 2.9107 -4.5123 38 1 5.2202 7.0775 -0.6728 39 1 4.8729 7.1139 -2.4182 40 1 2.4469 7.4897 -1.8756 41 1 2.8847 7.5879 -0.1531 42 1 4.0849 9.5096 0.6721 43 1 5.4379 8.9715 -0.3529 44 1 5.4484 11.1380 -1.5214 45 1 5.6006 11.3998 0.2329 46 1 3.2556 11.5658 -2.5630 47 1 1.9284 12.1155 -1.5115 48 1 1.7143 9.6978 -2.1217 49 1 1.8977 9.9357 -0.3668 50 1 1.2518 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085823203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:12 Heat of formation + Delta-G solvation = -28.512769 kcal Electronic energy + Delta-G solvation = -29389.573491 eV Core-core repulsion = 25417.716445 eV Total energy + Delta-G solvation = -3971.857046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36024 -39.56941 -38.08565 -36.89365 -35.38144 -32.69385 -32.21852 -31.30426 -31.04727 -29.37324 -27.72559 -26.87847 -25.93055 -24.23618 -24.04742 -23.25191 -21.97862 -21.62056 -20.39759 -19.78950 -18.15404 -16.91035 -16.59289 -16.33768 -16.13855 -15.80795 -15.49754 -15.18773 -15.08205 -14.79368 -14.52090 -14.27020 -14.20700 -14.10740 -13.90291 -13.33159 -12.99233 -12.93937 -12.68703 -12.57005 -12.26948 -11.98016 -11.86553 -11.76395 -11.48846 -11.43919 -11.05549 -10.96726 -10.91047 -10.71136 -10.65991 -10.43772 -10.29219 -9.94196 -9.69061 -9.44532 -9.36368 -9.15843 -8.43639 -8.30854 -8.08053 -7.34443 -6.04226 -4.04055 1.49315 1.62137 3.29641 3.30755 3.38624 3.43698 3.69905 3.85617 4.08233 4.43599 4.60330 4.82130 4.93447 4.99644 5.06407 5.10165 5.19580 5.23072 5.27327 5.30010 5.32862 5.35903 5.37637 5.46315 5.50850 5.55385 5.56980 5.66951 5.70501 5.74404 5.76444 5.82841 5.91075 5.95978 6.01129 6.11063 6.27980 6.40046 6.59679 6.68051 6.74794 6.98889 7.09704 7.13348 7.21756 7.26692 7.46453 7.79233 8.04278 8.12165 8.14370 8.49231 9.03511 9.59959 11.06541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003602 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.276388 B = 7770.540663 C =10345.116591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.313 6.313 3 C 0.308 3.692 4 C -0.188 4.188 5 C -0.022 4.022 6 C -0.147 4.147 7 C 0.100 3.900 8 N -0.531 5.531 9 C 0.189 3.811 10 C -0.502 4.502 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C 0.069 3.931 19 C 0.063 3.937 20 N -0.535 5.535 21 C 0.016 3.984 22 C 0.063 3.937 23 O -0.390 6.390 24 C 0.064 3.936 25 C 0.020 3.980 26 C 0.152 3.848 27 N -0.545 5.545 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.069 0.931 34 H 0.033 0.967 35 H -0.009 1.009 36 H 0.038 0.962 37 H 0.260 0.740 38 H 0.019 0.981 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.038 0.962 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.039 0.961 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 6.282 10.290 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.220 6.220 3 C 0.129 3.871 4 C -0.208 4.208 5 C -0.048 4.048 6 C -0.149 4.149 7 C -0.029 4.029 8 N -0.256 5.256 9 C 0.065 3.935 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.059 4.059 19 C -0.065 4.065 20 N -0.260 5.260 21 C -0.112 4.112 22 C -0.014 4.014 23 O -0.309 6.309 24 C -0.013 4.013 25 C -0.109 4.109 26 C -0.004 4.004 27 N -0.268 5.268 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.009 0.991 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.057 0.943 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.166 5.967 9.645 14.582 hybrid contribution 1.127 -0.157 -0.131 1.145 sum -8.039 5.811 9.514 13.744 Atomic orbital electron populations 1.22767 0.77871 1.02349 1.02278 1.86206 1.22433 1.25042 1.88362 1.19756 0.89369 0.84518 0.93445 1.20981 0.91839 0.99472 1.08556 1.21392 1.00732 0.90801 0.91854 1.20586 0.94606 0.96159 1.03576 1.20875 0.98137 0.91725 0.92147 1.62063 1.49953 1.02160 1.11388 1.19857 0.87217 0.92695 0.93776 1.21169 1.16704 1.25309 0.90886 0.91813 1.24954 0.95378 0.95278 0.98911 1.69956 1.20387 1.28560 1.34968 0.86490 0.77838 0.78012 0.85409 1.19625 1.21133 1.21128 1.21927 0.93832 0.87719 1.02466 1.22171 0.99410 0.85495 0.99380 1.62125 1.12996 1.03441 1.47481 1.22824 0.97942 0.97173 0.93309 1.22676 0.87186 0.89283 1.02213 1.87945 1.29862 1.55926 1.57141 1.22659 0.92563 0.94076 0.92030 1.22747 0.92835 0.94033 1.01258 1.22096 0.92205 0.93111 0.92970 1.67250 1.40850 0.98803 1.19876 0.92424 0.89129 0.92651 0.84507 0.84168 0.91243 0.94880 0.99086 0.94416 0.93050 0.96293 0.88631 0.89795 0.95573 0.94348 0.89170 0.92114 0.88709 0.92184 0.88748 0.89545 0.94320 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.55 16 2 O -0.31 -4.81 10.48 -18.72 -0.20 -5.01 16 3 C 0.31 5.20 7.49 -17.12 -0.13 5.07 16 4 C -0.19 -3.10 10.04 -39.28 -0.39 -3.50 16 5 C -0.02 -0.37 8.00 -39.31 -0.31 -0.69 16 6 C -0.15 -2.45 4.94 -104.47 -0.52 -2.97 16 7 C 0.10 1.63 4.96 -4.98 -0.02 1.61 16 8 N -0.53 -10.42 4.38 -237.51 -1.04 -11.46 16 9 C 0.19 4.61 4.56 -4.97 -0.02 4.59 16 10 C -0.50 -13.65 8.29 -34.44 -0.29 -13.93 16 11 H 0.06 1.75 7.68 -52.49 -0.40 1.35 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 14 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 C 0.07 1.22 4.63 -3.82 -0.02 1.21 16 19 C 0.06 0.93 4.98 -3.82 -0.02 0.91 16 20 N -0.53 -7.27 4.73 -234.31 -1.11 -8.38 16 21 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.06 0.71 7.01 37.21 0.26 0.97 16 23 O -0.39 -4.82 10.83 -35.23 -0.38 -5.20 16 24 C 0.06 0.68 7.01 37.21 0.26 0.94 16 25 C 0.02 0.23 5.64 -3.72 -0.02 0.21 16 26 C 0.15 2.44 10.85 -17.56 -0.19 2.25 16 27 N -0.54 -9.15 9.22 -13.33 -0.12 -9.27 16 28 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.14 2.34 7.78 -52.49 -0.41 1.93 16 33 H 0.07 0.98 6.66 -51.93 -0.35 0.63 16 34 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 35 H -0.01 -0.23 8.07 -51.93 -0.42 -0.65 16 36 H 0.04 0.97 5.22 -51.93 -0.27 0.70 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.02 0.32 6.63 -51.93 -0.34 -0.02 16 39 H 0.10 1.98 6.98 -51.93 -0.36 1.62 16 40 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 41 H 0.03 0.36 6.93 -51.93 -0.36 0.00 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 1.13 6.50 -51.93 -0.34 0.79 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 397.72 15.07 5.99 5.99 Total: -1.00 -31.09 397.72 -9.91 -41.00 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.29 Total: 1.23 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.48 Total: -0.17 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.53 Total: -54.41 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.58 Total: -10.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.09 -9.91 -41.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085823203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.489 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds