Wall clock time and date at job start Tue Mar 31 2020 18:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35674 * 117.00313 * 2 1 4 4 C 1.38915 * 119.68501 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11377 * 179.97438 * 4 3 2 6 6 C 1.38833 * 118.48301 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.35659 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47224 * 89.99658 * 7 6 5 9 9 C 1.46910 * 110.99877 * 293.95371 * 8 7 6 10 10 C 1.50699 * 109.46947 * 165.21895 * 9 8 7 11 11 H 1.08001 * 120.00084 * 358.37825 * 10 9 8 12 12 C 1.37880 * 120.00109 * 178.38224 * 10 9 8 13 13 N 1.31521 * 119.99399 * 359.97438 * 12 10 9 14 14 Si 1.86789 * 120.00251 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47460 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47277 * 120.00185 * 14 12 10 17 17 H 1.48498 * 109.47593 * 239.99901 * 14 12 10 18 18 C 1.46905 * 111.00048 * 170.00353 * 8 7 6 19 19 C 1.53001 * 109.46611 * 284.47808 * 18 8 7 20 20 N 1.46901 * 109.46959 * 185.27602 * 19 18 8 21 21 C 1.47023 * 110.99688 * 293.63516 * 20 19 18 22 22 C 1.53093 * 109.25520 * 177.61022 * 21 20 19 23 23 O 1.43010 * 109.26528 * 56.84817 * 22 21 20 24 24 C 1.43019 * 113.73680 * 301.33360 * 23 22 21 25 25 C 1.47008 * 111.00183 * 170.00341 * 20 19 18 26 26 C 1.38050 * 119.28832 * 359.97438 * 6 5 4 27 27 N 1.31963 * 120.83571 * 0.03198 * 26 6 5 28 28 H 1.08998 * 109.47244 * 59.99880 * 1 2 3 29 29 H 1.09002 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46765 * 299.99893 * 1 2 3 31 31 H 1.07999 * 120.44618 * 0.27917 * 4 3 2 32 32 H 1.07996 * 120.76127 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47033 * 209.99692 * 7 6 5 34 34 H 1.09001 * 109.46677 * 329.99632 * 7 6 5 35 35 H 1.09001 * 109.46635 * 285.21466 * 9 8 7 36 36 H 1.08992 * 109.46995 * 45.21547 * 9 8 7 37 37 H 0.97006 * 119.99316 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.46946 * 44.47851 * 18 8 7 39 39 H 1.09005 * 109.47067 * 164.48038 * 18 8 7 40 40 H 1.09001 * 109.47226 * 305.27063 * 19 18 8 41 41 H 1.08999 * 109.46992 * 65.27269 * 19 18 8 42 42 H 1.08995 * 109.50413 * 297.54390 * 21 20 19 43 43 H 1.08994 * 109.50740 * 57.67453 * 21 20 19 44 44 H 1.09003 * 109.51005 * 296.90965 * 22 21 20 45 45 H 1.09003 * 109.54485 * 176.80780 * 22 21 20 46 46 H 1.09002 * 109.50488 * 298.72688 * 24 23 22 47 47 H 1.08996 * 109.54252 * 178.62375 * 24 23 22 48 48 H 1.09004 * 109.50842 * 302.32489 * 25 20 19 49 49 H 1.09005 * 109.51143 * 62.40817 * 25 20 19 50 50 H 1.07998 * 119.58265 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8769 5.0197 -0.0017 8 7 4.0800 5.4641 -1.3870 9 6 5.0746 4.6248 -2.0687 10 6 4.9974 4.8612 -3.5550 11 1 4.2636 5.5449 -3.9556 12 6 5.8635 4.2046 -4.4034 13 7 6.7573 3.3723 -3.9154 14 14 5.7674 4.4971 -6.2458 15 1 4.6852 5.4716 -6.5365 16 1 7.0631 5.0382 -6.7293 17 1 5.4780 3.2147 -6.9363 18 6 4.4657 6.8808 -1.4343 19 6 3.2363 7.7529 -1.1715 20 7 3.5937 9.1674 -1.3431 21 6 4.5475 9.5988 -0.3108 22 6 4.9377 11.0577 -0.5618 23 8 3.7576 11.8653 -0.5799 24 6 2.8069 11.4734 -1.5739 25 6 2.3952 10.0186 -1.3332 26 6 1.8771 3.5096 -0.0010 27 7 1.3186 2.3140 -0.0004 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0228 0.3694 -0.0036 32 1 5.1254 2.5945 0.0000 33 1 3.2186 5.7204 0.5118 34 1 4.8375 4.9806 0.5119 35 1 6.0720 4.8807 -1.7113 36 1 4.8708 3.5753 -1.8566 37 1 7.3669 2.9107 -4.5123 38 1 5.2202 7.0775 -0.6728 39 1 4.8729 7.1139 -2.4182 40 1 2.4469 7.4897 -1.8756 41 1 2.8847 7.5879 -0.1531 42 1 4.0849 9.5096 0.6721 43 1 5.4379 8.9715 -0.3529 44 1 5.4484 11.1380 -1.5214 45 1 5.6006 11.3998 0.2329 46 1 3.2556 11.5658 -2.5630 47 1 1.9284 12.1155 -1.5115 48 1 1.7143 9.6978 -2.1217 49 1 1.8977 9.9357 -0.3668 50 1 1.2518 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085823203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:11 Heat of formation + Delta-G solvation = -51.818634 kcal Electronic energy + Delta-G solvation = -29390.584109 eV Core-core repulsion = 25417.716445 eV Total energy + Delta-G solvation = -3972.867664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61927 -40.54008 -39.35671 -38.21239 -36.54269 -34.70936 -33.54398 -32.43706 -32.09935 -30.75931 -29.17435 -28.17665 -27.09053 -25.81966 -24.97745 -24.55733 -23.53131 -22.88334 -21.50496 -21.14758 -19.36765 -18.56197 -17.97746 -17.60525 -17.11131 -16.96359 -16.87029 -16.46406 -16.34257 -15.97608 -15.81133 -15.52698 -15.44909 -15.37542 -15.08532 -14.70159 -14.31770 -14.22992 -14.08625 -13.97677 -13.61987 -13.29674 -13.24057 -12.88307 -12.80055 -12.65597 -12.56434 -12.35298 -12.31163 -12.12974 -12.07156 -11.81898 -11.64543 -11.42907 -11.25722 -10.79052 -10.65845 -10.60618 -10.51339 -9.40620 -9.30480 -8.95692 -8.17127 -6.23736 0.20825 0.30307 1.38752 1.40675 1.52758 2.16334 2.40875 2.63810 2.82509 2.98832 3.16471 3.39728 3.57103 3.86584 3.93657 3.96086 4.06219 4.07816 4.11640 4.18404 4.23195 4.25260 4.37148 4.45303 4.47455 4.50874 4.53916 4.56506 4.65960 4.70903 4.76102 4.77683 4.83604 4.85530 4.91082 4.98934 5.02286 5.06424 5.09568 5.30170 5.35965 5.42051 5.49455 5.70233 6.00820 6.03914 6.12691 6.19729 6.26237 6.38603 6.65348 6.85829 6.91753 7.44478 8.93140 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007808 B = 0.003602 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3585.276388 B = 7770.540663 C =10345.116591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.300 3.700 4 C -0.198 4.198 5 C -0.034 4.034 6 C -0.159 4.159 7 C 0.105 3.895 8 N -0.535 5.535 9 C 0.206 3.794 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.006 3.994 13 N -0.931 5.931 14 Si 0.956 3.044 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.282 1.282 18 C 0.076 3.924 19 C 0.079 3.921 20 N -0.552 5.552 21 C 0.017 3.983 22 C 0.064 3.936 23 O -0.402 6.402 24 C 0.063 3.937 25 C 0.021 3.979 26 C 0.153 3.847 27 N -0.550 5.550 28 H 0.051 0.949 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.033 0.967 35 H -0.038 1.038 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.056 0.944 47 H 0.119 0.881 48 H 0.093 0.907 49 H 0.043 0.957 50 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 7.293 10.643 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.060 4.060 6 C -0.161 4.161 7 C -0.023 4.023 8 N -0.259 5.259 9 C 0.080 3.920 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.192 4.192 13 N -0.572 5.572 14 Si 0.782 3.218 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.208 1.208 18 C -0.052 4.052 19 C -0.049 4.049 20 N -0.278 5.278 21 C -0.111 4.111 22 C -0.012 4.012 23 O -0.321 6.321 24 C -0.014 4.014 25 C -0.107 4.107 26 C -0.003 4.003 27 N -0.274 5.274 28 H 0.069 0.931 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.051 0.949 35 H -0.021 1.021 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.133 0.867 46 H 0.074 0.926 47 H 0.137 0.863 48 H 0.111 0.889 49 H 0.062 0.938 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.866 6.990 10.009 16.344 hybrid contribution 1.609 -0.485 -0.199 1.692 sum -9.258 6.506 9.810 14.976 Atomic orbital electron populations 1.23042 0.75920 1.04563 1.02172 1.86199 1.24396 1.24308 1.88069 1.19955 0.89643 0.85116 0.93187 1.21158 0.92280 0.99786 1.08660 1.21468 1.00654 0.91519 0.92313 1.20678 0.95096 0.96068 1.04279 1.20926 0.98821 0.92355 0.90243 1.61968 1.47959 1.02541 1.13446 1.19473 0.86869 0.92721 0.92964 1.21460 1.16290 1.24783 0.92563 0.92525 1.25738 0.95151 0.95145 1.03209 1.70064 1.21174 1.29522 1.36417 0.85529 0.78056 0.77938 0.80315 1.19045 1.20494 1.20845 1.21818 0.95577 0.87157 1.00638 1.21902 0.97212 0.85854 0.99937 1.62081 1.14310 1.03015 1.48365 1.22827 0.97374 0.97754 0.93146 1.22740 0.87209 0.88528 1.02758 1.87933 1.30299 1.56257 1.57628 1.22794 0.93132 0.93956 0.91512 1.22803 0.92061 0.94093 1.01760 1.22496 0.92175 0.93753 0.91878 1.67320 1.40912 0.98998 1.20136 0.93065 0.85844 0.92147 0.83363 0.84837 0.88136 0.94928 1.02064 0.95882 0.92951 0.95734 0.92187 0.90590 0.93943 0.93867 0.89941 0.92656 0.86686 0.92573 0.86309 0.88912 0.93832 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 1.99 16 2 O -0.32 -9.59 10.48 -89.92 -0.94 -10.53 16 3 C 0.30 9.95 7.49 84.79 0.63 10.58 16 4 C -0.20 -6.60 10.04 22.47 0.23 -6.37 16 5 C -0.03 -1.16 8.00 22.45 0.18 -0.98 16 6 C -0.16 -5.23 4.94 -19.77 -0.10 -5.33 16 7 C 0.10 3.33 4.96 85.56 0.42 3.75 16 8 N -0.53 -21.04 4.38 -905.35 -3.97 -25.00 16 9 C 0.21 10.33 4.56 85.55 0.39 10.72 16 10 C -0.51 -28.45 8.29 25.60 0.21 -28.24 16 11 H 0.06 3.16 7.68 -2.91 -0.02 3.14 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 14 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 18 C 0.08 2.71 4.63 86.30 0.40 3.11 16 19 C 0.08 2.22 4.98 86.30 0.43 2.65 16 20 N -0.55 -14.27 4.73 -895.22 -4.23 -18.50 16 21 C 0.02 0.40 5.44 86.31 0.47 0.86 16 22 C 0.06 1.34 7.01 72.01 0.50 1.84 16 23 O -0.40 -9.13 10.83 -148.98 -1.61 -10.74 16 24 C 0.06 1.20 7.01 72.01 0.50 1.71 16 25 C 0.02 0.43 5.64 86.31 0.49 0.92 16 26 C 0.15 4.69 10.85 84.63 0.92 5.61 16 27 N -0.55 -17.86 9.22 -308.95 -2.85 -20.71 16 28 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.13 4.69 7.78 -2.91 -0.02 4.66 16 33 H 0.10 2.57 6.66 -2.39 -0.02 2.56 16 34 H 0.03 1.05 8.07 -2.39 -0.02 1.03 16 35 H -0.04 -2.12 8.07 -2.39 -0.02 -2.13 16 36 H 0.02 1.23 5.22 -2.39 -0.01 1.22 16 37 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 38 H 0.02 0.84 6.63 -2.39 -0.02 0.82 16 39 H 0.06 2.56 6.98 -2.38 -0.02 2.54 16 40 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16 41 H 0.04 1.06 6.93 -2.39 -0.02 1.04 16 42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 2.01 6.50 -2.39 -0.02 1.99 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.09 1.81 8.09 -2.38 -0.02 1.79 16 49 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.18 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -67.19 397.72 -3.05 -70.24 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.91 Total: 19.74 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 7.32 Total: 3.60 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -10.76 Total: -118.99 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -2.55 Total: -21.28 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.19 -3.05 -70.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085823203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.424 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds