Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46896 * 109.47255 * 179.97438 * 15 14 12 17 17 C 1.46948 * 111.00183 * 293.79792 * 16 15 14 18 18 C 1.53049 * 109.36764 * 176.80851 * 17 16 15 19 19 N 1.46961 * 109.36177 * 58.40434 * 18 17 16 20 20 C 1.46896 * 111.00056 * 176.81126 * 19 18 17 21 21 C 1.50694 * 109.47137 * 313.80076 * 20 19 18 22 22 C 1.34521 * 125.79304 * 89.71674 * 21 20 19 23 23 C 1.41383 * 106.84207 * 179.89052 * 22 21 20 24 24 C 1.34518 * 106.84084 * 0.36559 * 23 22 21 25 25 O 1.34306 * 108.42040 * 359.77596 * 24 23 22 26 26 C 1.46956 * 110.87704 * 300.67780 * 19 18 17 27 27 C 1.46963 * 111.00029 * 169.99612 * 16 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 1.08999 * 109.48998 * 296.77780 * 17 16 15 39 39 H 1.09003 * 109.49079 * 56.83983 * 17 16 15 40 40 H 1.09000 * 109.49067 * 298.43821 * 18 17 16 41 41 H 1.09001 * 109.49268 * 178.36774 * 18 17 16 42 42 H 1.09004 * 109.47281 * 73.79804 * 20 19 18 43 43 H 1.09002 * 109.47298 * 193.79353 * 20 19 18 44 44 H 1.07992 * 126.57551 * 0.02562 * 22 21 20 45 45 H 1.07994 * 126.57845 * 180.16328 * 23 22 21 46 46 H 1.08000 * 125.78995 * 179.74721 * 24 23 22 47 47 H 1.08999 * 109.49195 * 299.35522 * 26 19 18 48 48 H 1.09002 * 109.48564 * 179.28964 * 26 19 18 49 49 H 1.09001 * 109.48867 * 303.15880 * 27 16 15 50 50 H 1.09000 * 109.48524 * 63.22347 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 1.6454 -4.9073 -0.0154 17 6 0.9030 -5.0919 1.2392 18 6 0.0905 -6.3866 1.1625 19 7 0.9973 -7.5172 0.9193 20 6 0.2629 -8.7894 0.9143 21 6 -0.6725 -8.8342 2.0949 22 6 -1.9445 -8.3969 2.1080 23 6 -2.4455 -8.6328 3.4088 24 6 -1.4471 -9.1927 4.1153 25 8 -0.3756 -9.3123 3.3144 26 6 1.7396 -7.3327 -0.3354 27 6 2.5522 -6.0380 -0.2587 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 3.0065 -3.5735 -0.9001 37 1 3.0065 -3.5813 0.8798 38 1 1.6044 -5.1516 2.0714 39 1 0.2295 -4.2483 1.3908 40 1 -0.6297 -6.3162 0.3473 41 1 -0.4384 -6.5404 2.1031 42 1 -0.3120 -8.8735 -0.0080 43 1 0.9693 -9.6171 0.9786 44 1 -2.4809 -7.9530 1.2824 45 1 -3.4382 -8.4040 3.7675 46 1 -1.4983 -9.4945 5.1511 47 1 1.0382 -7.2730 -1.1676 48 1 2.4131 -8.1763 -0.4869 49 1 3.0810 -5.8842 -1.1993 50 1 3.2724 -6.1084 0.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092793181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = 1.973486 kcal Electronic energy + Delta-G solvation = -28775.654032 eV Core-core repulsion = 24805.118969 eV Total energy + Delta-G solvation = -3970.535063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.92531 -39.68788 -38.81316 -36.19248 -34.76067 -33.33337 -32.65831 -31.97004 -31.03001 -30.17271 -27.98355 -27.04397 -25.71279 -24.60555 -23.80626 -23.05424 -22.07138 -21.43800 -20.72441 -19.91362 -18.30182 -17.66220 -17.06979 -16.53215 -16.35211 -15.75543 -15.49940 -15.40865 -15.31236 -15.11601 -14.70134 -14.48080 -14.30105 -14.15758 -13.83726 -13.34949 -13.16009 -13.02453 -12.83924 -12.56271 -12.30619 -12.20298 -12.14890 -11.97211 -11.78783 -11.62357 -11.46210 -11.22044 -11.11443 -10.94758 -10.87232 -10.63263 -10.51305 -10.19845 -10.13919 -9.62263 -8.97220 -8.86281 -8.61757 -8.41579 -8.37884 -7.61221 -6.02405 -4.07146 1.35311 2.25237 2.64724 3.33017 3.37246 3.39178 3.48566 3.59310 3.67029 4.17238 4.25718 4.46969 4.59228 4.68243 4.70235 4.82860 4.86352 4.95212 5.05206 5.17421 5.21025 5.22790 5.29606 5.31814 5.36771 5.41409 5.47635 5.55050 5.58845 5.64370 5.72792 5.73934 5.75486 5.82133 5.87871 5.95594 6.12622 6.14224 6.15469 6.25154 6.56152 6.63738 6.82163 6.98870 7.00003 7.08957 7.46541 7.57008 7.94028 8.25733 8.45407 8.92259 9.13029 9.57765 11.05630 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.001946 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.391715 B =14382.455905 C =14966.917158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.545 6.545 14 C -0.134 4.134 15 C 0.073 3.927 16 N -0.542 5.542 17 C 0.053 3.947 18 C 0.054 3.946 19 N -0.537 5.537 20 C 0.133 3.867 21 C -0.005 4.005 22 C -0.206 4.206 23 C -0.214 4.214 24 C -0.040 4.040 25 O -0.169 6.169 26 C 0.059 3.941 27 C 0.058 3.942 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.202 0.798 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.587 -27.093 6.103 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.175 4.175 15 C -0.054 4.054 16 N -0.267 5.267 17 C -0.075 4.075 18 C -0.073 4.073 19 N -0.263 5.263 20 C 0.006 3.994 21 C -0.056 4.056 22 C -0.226 4.226 23 C -0.233 4.233 24 C -0.108 4.108 25 O -0.064 6.064 26 C -0.068 4.068 27 C -0.070 4.070 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.550 -27.007 6.218 30.024 hybrid contribution -0.289 0.572 -0.869 1.079 sum -11.839 -26.435 5.349 29.455 Atomic orbital electron populations 1.21633 0.81470 1.02612 1.00313 1.48162 1.06175 1.07893 1.71359 1.19274 0.92541 0.78166 0.97459 1.21399 1.36486 1.06253 0.92302 0.92533 1.24951 0.95391 0.96418 0.97452 1.69924 1.38366 1.14376 1.30782 0.86549 0.78342 0.77798 0.84668 1.20265 1.21190 1.20174 1.20307 0.88071 0.85172 0.77414 1.90665 1.14002 1.87374 1.50321 1.21638 0.99270 0.92720 1.03850 1.21786 0.94533 0.86570 1.02535 1.62163 1.27974 1.02326 1.34239 1.22217 0.97442 0.96939 0.90931 1.22313 0.94064 0.89513 1.01454 1.62301 1.27302 1.01372 1.35291 1.20506 0.94228 0.93845 0.90853 1.22202 0.95485 1.02065 0.85848 1.21650 0.95080 1.06822 0.99024 1.21838 1.01096 1.05950 0.94451 1.24075 0.85090 1.04742 0.96913 1.84049 1.38010 1.64358 1.19965 1.22189 0.97148 0.97863 0.89647 1.22118 0.93997 0.89311 1.01622 0.93871 0.90852 0.92326 0.95091 0.93894 0.92683 0.89901 0.88766 0.89795 0.93838 0.93941 0.89899 0.93788 0.89891 0.91490 0.88869 0.83586 0.83422 0.78123 0.93548 0.90047 0.89827 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.25 59.85 0.61 1.95 16 2 N -0.60 -12.99 2.86 -182.95 -0.52 -13.52 16 3 C 0.24 6.52 5.16 -5.20 -0.03 6.49 16 4 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.50 10.54 7.67 -10.98 -0.08 10.46 16 13 O -0.55 -13.83 15.56 5.55 0.09 -13.74 16 14 C -0.13 -2.00 4.19 -27.88 -0.12 -2.12 16 15 C 0.07 1.06 4.25 -3.83 -0.02 1.04 16 16 N -0.54 -6.41 4.71 -234.47 -1.10 -7.52 16 17 C 0.05 0.58 5.41 -3.77 -0.02 0.56 16 18 C 0.05 0.52 4.81 -3.77 -0.02 0.50 16 19 N -0.54 -4.94 4.85 -235.91 -1.14 -6.09 16 20 C 0.13 1.01 5.82 -4.98 -0.03 0.98 16 21 C -0.01 -0.05 5.51 -35.63 -0.20 -0.24 16 22 C -0.21 -1.67 9.17 -39.70 -0.36 -2.04 16 23 C -0.21 -1.59 10.91 -39.70 -0.43 -2.03 16 24 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 25 O -0.17 -1.62 10.65 5.69 0.06 -1.56 16 26 C 0.06 0.50 5.58 -3.77 -0.02 0.48 16 27 C 0.06 0.60 5.61 -3.76 -0.02 0.58 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.77 6.43 -51.93 -0.33 0.43 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.06 6.46 -51.93 -0.34 0.73 16 35 H 0.09 1.31 7.40 -51.93 -0.38 0.92 16 36 H 0.08 1.31 7.98 -51.93 -0.41 0.90 16 37 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.85 6.34 -51.93 -0.33 0.53 16 40 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.82 5.85 -51.93 -0.30 0.51 16 42 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.20 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 50 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -34.60 399.59 -10.04 -44.64 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.36 Total: -2.01 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.80 Total: 2.89 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -2.04 Total: -53.30 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.15 Total: -15.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.60 -10.04 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092793181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.617 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds