Wall clock time and date at job start Tue Mar 31 2020 18:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 2 16 16 N 1.46896 * 109.47255 * 179.97438 * 15 14 12 17 17 C 1.46948 * 111.00183 * 293.79792 * 16 15 14 18 18 C 1.53049 * 109.36764 * 176.80851 * 17 16 15 19 19 N 1.46961 * 109.36177 * 58.40434 * 18 17 16 20 20 C 1.46896 * 111.00056 * 176.81126 * 19 18 17 21 21 C 1.50694 * 109.47137 * 313.80076 * 20 19 18 22 22 C 1.34521 * 125.79304 * 89.71674 * 21 20 19 23 23 C 1.41383 * 106.84207 * 179.89052 * 22 21 20 24 24 C 1.34518 * 106.84084 * 0.36559 * 23 22 21 25 25 O 1.34306 * 108.42040 * 359.77596 * 24 23 22 26 26 C 1.46956 * 110.87704 * 300.67780 * 19 18 17 27 27 C 1.46963 * 111.00029 * 169.99612 * 16 15 14 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 1.08999 * 109.48998 * 296.77780 * 17 16 15 39 39 H 1.09003 * 109.49079 * 56.83983 * 17 16 15 40 40 H 1.09000 * 109.49067 * 298.43821 * 18 17 16 41 41 H 1.09001 * 109.49268 * 178.36774 * 18 17 16 42 42 H 1.09004 * 109.47281 * 73.79804 * 20 19 18 43 43 H 1.09002 * 109.47298 * 193.79353 * 20 19 18 44 44 H 1.07992 * 126.57551 * 0.02562 * 22 21 20 45 45 H 1.07994 * 126.57845 * 180.16328 * 23 22 21 46 46 H 1.08000 * 125.78995 * 179.74721 * 24 23 22 47 47 H 1.08999 * 109.49195 * 299.35522 * 26 19 18 48 48 H 1.09002 * 109.48564 * 179.28964 * 26 19 18 49 49 H 1.09001 * 109.48867 * 303.15880 * 27 16 15 50 50 H 1.09000 * 109.48524 * 63.22347 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3798 -3.6352 -0.0104 16 7 1.6454 -4.9073 -0.0154 17 6 0.9030 -5.0919 1.2392 18 6 0.0905 -6.3866 1.1625 19 7 0.9973 -7.5172 0.9193 20 6 0.2629 -8.7894 0.9143 21 6 -0.6725 -8.8342 2.0949 22 6 -1.9445 -8.3969 2.1080 23 6 -2.4455 -8.6328 3.4088 24 6 -1.4471 -9.1927 4.1153 25 8 -0.3756 -9.3123 3.3144 26 6 1.7396 -7.3327 -0.3354 27 6 2.5522 -6.0380 -0.2587 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 0.7588 -2.5340 0.8844 35 1 0.7590 -2.5261 -0.8955 36 1 3.0065 -3.5735 -0.9001 37 1 3.0065 -3.5813 0.8798 38 1 1.6044 -5.1516 2.0714 39 1 0.2295 -4.2483 1.3908 40 1 -0.6297 -6.3162 0.3473 41 1 -0.4384 -6.5404 2.1031 42 1 -0.3120 -8.8735 -0.0080 43 1 0.9693 -9.6171 0.9786 44 1 -2.4809 -7.9530 1.2824 45 1 -3.4382 -8.4040 3.7675 46 1 -1.4983 -9.4945 5.1511 47 1 1.0382 -7.2730 -1.1676 48 1 2.4131 -8.1763 -0.4869 49 1 3.0810 -5.8842 -1.1993 50 1 3.2724 -6.1084 0.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092793181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:08 Heat of formation + Delta-G solvation = -22.815712 kcal Electronic energy + Delta-G solvation = -28776.728972 eV Core-core repulsion = 24805.118969 eV Total energy + Delta-G solvation = -3971.610003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.49824 -40.86496 -40.11086 -37.12629 -36.52471 -34.74683 -33.93447 -32.95937 -31.85426 -31.10751 -29.68413 -28.01620 -27.22880 -25.69234 -24.80281 -24.40738 -22.77889 -22.61954 -21.31094 -20.71106 -19.89951 -18.70078 -18.25780 -18.10312 -17.39065 -17.10367 -16.82564 -16.46276 -16.31068 -16.08559 -15.82496 -15.69180 -15.39374 -15.17452 -14.75234 -14.61977 -14.08322 -13.96952 -13.72158 -13.64737 -13.54607 -13.51550 -13.43937 -13.20992 -13.08426 -12.84515 -12.77051 -12.62496 -12.42655 -12.23998 -12.19181 -12.13137 -11.77154 -11.72644 -11.60650 -10.77862 -10.64551 -10.60495 -9.58392 -9.42347 -9.40661 -9.17656 -8.22517 -6.37672 0.78256 1.36404 1.40955 1.48302 1.70757 1.84142 2.13638 2.27986 2.41897 2.92198 2.97188 3.06668 3.71624 3.79908 3.85321 3.92910 4.11150 4.14199 4.15789 4.21006 4.28741 4.36764 4.41830 4.42723 4.48681 4.52699 4.60413 4.66117 4.72495 4.84883 4.88693 4.91916 4.94653 4.96231 4.97766 4.99550 5.04085 5.06307 5.10103 5.22680 5.22864 5.55988 5.62388 5.83568 5.84193 5.91917 6.05851 6.06161 6.11289 6.26111 6.69346 6.79564 7.27891 7.48742 8.84346 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.001946 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.391715 B =14382.455905 C =14966.917158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.082 3.918 16 N -0.535 5.535 17 C 0.051 3.949 18 C 0.064 3.936 19 N -0.551 5.551 20 C 0.135 3.865 21 C -0.024 4.024 22 C -0.210 4.210 23 C -0.227 4.227 24 C -0.044 4.044 25 O -0.191 6.191 26 C 0.066 3.934 27 C 0.054 3.946 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.023 0.977 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.022 0.978 38 H 0.026 0.974 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.231 0.769 47 H 0.052 0.948 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 -28.618 5.058 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.154 4.154 15 C -0.047 4.047 16 N -0.260 5.260 17 C -0.077 4.077 18 C -0.063 4.063 19 N -0.277 5.277 20 C 0.009 3.991 21 C -0.074 4.074 22 C -0.230 4.230 23 C -0.246 4.246 24 C -0.112 4.112 25 O -0.087 6.087 26 C -0.061 4.061 27 C -0.074 4.074 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.041 0.959 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.183 0.817 46 H 0.247 0.753 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.106 0.894 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.957 -28.558 5.176 32.204 hybrid contribution 0.423 1.007 -0.444 1.179 sum -13.534 -27.551 4.732 31.058 Atomic orbital electron populations 1.21944 0.77746 1.04097 1.02582 1.48209 1.08511 1.06389 1.71179 1.18747 0.91040 0.80509 0.96055 1.21677 1.36863 1.06567 0.93014 0.92787 1.25911 0.94916 0.96457 1.02149 1.70049 1.38872 1.14816 1.33149 0.85442 0.78885 0.77325 0.79006 1.18348 1.20346 1.20293 1.21380 0.87786 0.86737 0.75798 1.90634 1.16783 1.88284 1.52676 1.21541 0.98827 0.88814 1.06174 1.21588 0.94275 0.88016 1.00786 1.62202 1.27629 1.01519 1.34637 1.22289 0.97229 0.98324 0.89816 1.22176 0.93781 0.88867 1.01525 1.62272 1.27785 1.01922 1.35747 1.20548 0.94369 0.93050 0.91153 1.22447 0.96080 1.02880 0.86021 1.21883 0.95009 1.06425 0.99658 1.22155 1.02007 1.06068 0.94353 1.24744 0.84456 1.04047 0.97931 1.84038 1.39144 1.64897 1.20597 1.22153 0.97249 0.97173 0.89569 1.22217 0.94058 0.89861 1.01298 0.91148 0.91636 0.88586 0.95903 0.98626 0.92399 0.86946 0.86494 0.91470 0.95984 0.95575 0.88940 0.93211 0.90167 0.89961 0.88292 0.82618 0.81746 0.75291 0.92945 0.88300 0.89423 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.25 127.77 1.31 3.63 16 2 N -0.61 -26.34 2.86 -851.12 -2.43 -28.78 16 3 C 0.26 14.25 5.16 85.63 0.44 14.69 16 4 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.00 0.26 5.46 84.66 0.46 0.73 16 7 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 8 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 9 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 C 0.49 20.79 7.67 87.66 0.67 21.47 16 13 O -0.60 -31.87 15.56 -3.04 -0.05 -31.92 16 14 C -0.11 -3.18 4.19 29.85 0.12 -3.05 16 15 C 0.08 2.33 4.25 86.30 0.37 2.69 16 16 N -0.54 -11.93 4.71 -895.74 -4.22 -16.15 16 17 C 0.05 1.04 5.41 86.31 0.47 1.51 16 18 C 0.06 1.10 4.81 86.31 0.42 1.52 16 19 N -0.55 -9.20 4.85 -900.29 -4.37 -13.57 16 20 C 0.14 1.81 5.82 85.56 0.50 2.31 16 21 C -0.02 -0.39 5.51 24.83 0.14 -0.25 16 22 C -0.21 -3.04 9.17 22.19 0.20 -2.84 16 23 C -0.23 -2.96 10.91 22.19 0.24 -2.72 16 24 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 25 O -0.19 -3.46 10.65 -2.56 -0.03 -3.49 16 26 C 0.07 0.99 5.58 86.31 0.48 1.48 16 27 C 0.05 1.07 5.61 86.31 0.48 1.55 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.10 2.13 6.43 -2.39 -0.02 2.11 16 31 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 32 H 0.00 -0.28 7.42 -2.38 -0.02 -0.30 16 33 H 0.27 15.39 8.31 -92.72 -0.77 14.62 16 34 H 0.11 2.53 6.46 -2.38 -0.02 2.51 16 35 H 0.12 2.83 7.40 -2.39 -0.02 2.81 16 36 H 0.07 2.13 7.98 -2.38 -0.02 2.11 16 37 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 38 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 1.66 6.34 -2.39 -0.02 1.64 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.44 5.85 -2.39 -0.01 1.43 16 42 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.23 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 50 H 0.03 0.69 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -78.47 399.59 -0.52 -78.99 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.91 Total: 12.91 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 7.36 Total: 11.37 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -10.73 Total: -115.28 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.07 Total: -35.41 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.47 -0.52 -78.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092793181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.175 kcal (2) G-P(sol) polarization free energy of solvation -78.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds