Wall clock time and date at job start Tue Mar 31 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99704 * 2 1 4 4 C 1.52994 * 109.47123 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47452 * 64.99642 * 4 3 2 6 6 C 1.46504 * 120.00325 * 270.00695 * 5 4 3 7 7 C 1.53000 * 109.46669 * 269.99405 * 6 5 4 8 8 N 1.46895 * 109.47079 * 179.97438 * 7 6 5 9 9 C 1.46898 * 111.00258 * 170.00035 * 8 7 6 10 10 C 1.46909 * 111.00197 * 293.95773 * 8 7 6 11 11 C 1.34781 * 119.99879 * 89.99500 * 5 4 3 12 12 O 1.21575 * 119.99880 * 179.97438 * 11 5 4 13 13 N 1.34778 * 119.99629 * 0.02562 * 11 5 4 14 14 C 1.39243 * 119.99652 * 185.17484 * 13 11 5 15 15 C 1.39480 * 119.83679 * 324.05004 * 14 13 11 16 16 C 1.36367 * 120.17286 * 180.25661 * 15 14 13 17 17 C 1.40874 * 119.82413 * 359.49018 * 16 15 14 18 18 C 1.41158 * 120.16239 * 180.23301 * 17 16 15 19 19 H 1.08007 * 120.00058 * 205.01442 * 18 17 16 20 20 C 1.39893 * 120.00193 * 25.00950 * 18 17 16 21 21 N 1.30881 * 119.99832 * 17.70316 * 20 18 17 22 22 Si 1.86802 * 120.00251 * 197.69568 * 20 18 17 23 23 H 1.48497 * 109.47079 * 94.98398 * 22 20 18 24 24 H 1.48497 * 109.47288 * 214.98638 * 22 20 18 25 25 H 1.48504 * 109.46869 * 334.98670 * 22 20 18 26 26 C 1.40868 * 119.67492 * 0.53062 * 17 16 15 27 27 C 1.36376 * 119.82424 * 359.72225 * 26 17 16 28 28 H 1.08995 * 109.46917 * 60.00318 * 1 2 3 29 29 H 1.09006 * 109.46470 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47101 * 299.99771 * 1 2 3 31 31 H 1.08994 * 109.47050 * 59.99894 * 3 2 1 32 32 H 1.09004 * 109.46697 * 300.00124 * 3 2 1 33 33 H 1.09003 * 109.47119 * 305.00075 * 4 3 2 34 34 H 1.08994 * 109.47605 * 185.00011 * 4 3 2 35 35 H 1.08999 * 109.47096 * 29.99091 * 6 5 4 36 36 H 1.09000 * 109.47242 * 149.99682 * 6 5 4 37 37 H 1.08996 * 109.47199 * 300.00210 * 7 6 5 38 38 H 1.09000 * 109.47063 * 60.00167 * 7 6 5 39 39 H 1.09003 * 109.46982 * 60.00463 * 9 8 7 40 40 H 1.09009 * 109.47071 * 180.02562 * 9 8 7 41 41 H 1.08996 * 109.47233 * 300.00261 * 9 8 7 42 42 H 1.09000 * 109.46907 * 59.99901 * 10 8 7 43 43 H 1.08996 * 109.46825 * 179.97438 * 10 8 7 44 44 H 1.09001 * 109.46537 * 299.99590 * 10 8 7 45 45 H 0.96995 * 120.00403 * 5.17525 * 13 11 5 46 46 H 1.08005 * 119.91336 * 359.97063 * 15 14 13 47 47 H 1.08001 * 120.09186 * 179.74557 * 16 15 14 48 48 H 0.96998 * 120.00158 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.09039 * 179.70685 * 26 17 16 50 50 H 1.08003 * 119.91158 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3427 7 6 5.5224 -1.3038 -0.9388 8 7 5.6521 -2.7643 -1.0285 9 6 7.0537 -3.1784 -0.8799 10 6 4.7982 -3.4307 -0.0361 11 6 4.2614 1.3339 -2.3218 12 8 4.6273 0.8191 -3.3607 13 7 4.1425 2.6738 -2.2389 14 6 4.3328 3.4610 -3.3715 15 6 5.2965 3.1006 -4.3133 16 6 5.4922 3.8694 -5.4224 17 6 4.7105 5.0245 -5.6211 18 6 4.9037 5.8228 -6.7691 19 1 4.6347 6.8687 -6.7511 20 6 5.4435 5.2593 -7.9302 21 7 5.4488 3.9598 -8.0855 22 14 6.1566 6.3617 -9.2590 23 1 7.6232 6.4876 -9.0633 24 1 5.8843 5.7687 -10.5930 25 1 5.5291 7.7051 -9.1770 26 6 3.7395 5.3823 -4.6654 27 6 3.5589 4.6063 -3.5586 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5684 0.8409 34 1 3.9785 2.1766 0.0889 35 1 3.3854 -1.3629 -0.6733 36 1 3.9121 -1.2113 -2.3668 37 1 6.2423 -0.8329 -1.6082 38 1 5.7155 -0.9845 0.0853 39 1 7.4276 -2.8533 0.0910 40 1 7.1212 -4.2641 -0.9508 41 1 7.6522 -2.7252 -1.6701 42 1 3.7571 -3.1608 -0.2129 43 1 4.9133 -4.5109 -0.1247 44 1 5.0905 -3.1147 0.9653 45 1 3.9245 3.0898 -1.3902 46 1 5.8925 2.2128 -4.1613 47 1 6.2415 3.5914 -6.1487 48 1 5.8228 3.5690 -8.8907 49 1 3.1398 6.2690 -4.8086 50 1 2.8151 4.8796 -2.8247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104985821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:10 Heat of formation + Delta-G solvation = -31.059706 kcal Electronic energy + Delta-G solvation = -29421.105441 eV Core-core repulsion = 25449.137951 eV Total energy + Delta-G solvation = -3971.967489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.22752 -38.20424 -37.74285 -37.15206 -35.20357 -34.44093 -32.88765 -30.77992 -29.47714 -29.19849 -28.26668 -27.69457 -26.44968 -25.13945 -23.90661 -23.17237 -21.50415 -21.19035 -20.56288 -19.08555 -18.05619 -17.25245 -16.91406 -16.42639 -16.07487 -15.61578 -15.50368 -15.37469 -15.13466 -14.85581 -14.47571 -14.23489 -13.84308 -13.73461 -13.28164 -13.11178 -12.69975 -12.62726 -12.53865 -12.41878 -12.16966 -11.99046 -11.91331 -11.79415 -11.76406 -11.64903 -11.39222 -11.36765 -11.09323 -10.88437 -10.72439 -10.44788 -9.92986 -9.87143 -9.81722 -9.42631 -9.11652 -8.63501 -8.58642 -8.38064 -7.44747 -6.93488 -6.67153 -4.22626 2.72094 2.91328 3.11564 3.12901 3.15316 3.21925 3.52701 3.73244 3.97674 3.99855 4.30732 4.70527 4.80559 4.89146 4.97668 5.00807 5.04312 5.13848 5.17533 5.20435 5.23522 5.23757 5.43065 5.46407 5.49310 5.56734 5.62242 5.75577 5.76172 5.77852 5.93046 6.17730 6.19346 6.46615 6.59808 6.83191 6.89691 6.90941 6.92333 7.04934 7.12550 7.17397 7.36536 7.39396 7.69168 7.88994 8.08537 8.13319 8.33438 8.52280 8.70716 8.95346 8.99963 9.20176 10.25724 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002763 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.503112 B =10131.413232 C =11683.037698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.039 3.961 4 C 0.115 3.885 5 N -0.627 5.627 6 C 0.143 3.857 7 C 0.041 3.959 8 N -0.544 5.544 9 C 0.027 3.973 10 C 0.021 3.979 11 C 0.695 3.305 12 O -0.566 6.566 13 N -0.669 5.669 14 C 0.011 3.989 15 C -0.085 4.085 16 C -0.156 4.156 17 C 0.105 3.895 18 C -0.461 4.461 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.788 5.788 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.216 4.216 27 C -0.107 4.107 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.023 0.977 45 H 0.387 0.613 46 H 0.107 0.893 47 H 0.119 0.881 48 H 0.281 0.719 49 H 0.094 0.906 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -9.417 18.563 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.039 4.039 4 C -0.010 4.010 5 N -0.365 5.365 6 C 0.019 3.981 7 C -0.089 4.089 8 N -0.268 5.268 9 C -0.122 4.122 10 C -0.127 4.127 11 C 0.397 3.603 12 O -0.441 6.441 13 N -0.316 5.316 14 C -0.082 4.082 15 C -0.105 4.105 16 C -0.176 4.176 17 C 0.102 3.898 18 C -0.491 4.491 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.413 5.413 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.237 4.237 27 C -0.127 4.127 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.221 0.779 46 H 0.125 0.875 47 H 0.136 0.864 48 H 0.092 0.908 49 H 0.112 0.888 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.487 -10.316 17.135 20.303 hybrid contribution 0.106 1.132 0.694 1.332 sum -3.382 -9.184 17.829 20.339 Atomic orbital electron populations 1.22724 0.81138 1.02642 0.99922 1.87869 1.19593 1.27472 1.95408 1.23133 0.94551 0.85423 1.00804 1.21510 0.92151 0.99386 0.87936 1.47045 1.71756 1.06578 1.11111 1.21188 0.94871 0.78032 1.03965 1.22561 0.99612 0.87119 0.99565 1.61852 1.08105 1.06874 1.49943 1.22368 0.88669 1.01120 1.00005 1.22461 0.98302 0.99284 0.92656 1.16015 0.79262 0.81648 0.83357 1.90940 1.52374 1.72544 1.28270 1.42245 1.74054 1.03994 1.11345 1.16993 1.03835 0.95979 0.91348 1.20577 0.96465 0.98724 0.94704 1.20999 1.01898 0.97558 0.97155 1.17659 0.88823 0.91712 0.91560 1.19534 1.36665 0.97270 0.95623 0.90478 1.25926 0.93734 0.95150 0.99551 1.69873 1.33122 1.11550 1.26788 0.86320 0.80032 0.81010 0.79451 1.19389 1.20338 1.18645 1.20513 1.02889 1.02461 0.97800 1.20008 0.98239 0.96354 0.98116 0.93983 0.89733 0.94297 0.92485 0.92542 0.89652 0.89378 0.90035 0.89192 0.90235 0.95232 0.95921 0.91415 0.91163 0.90879 0.91560 0.95887 0.77873 0.87460 0.86363 0.90847 0.88773 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.18 9.53 -35.23 -0.34 -4.52 16 3 C 0.04 0.38 6.28 37.15 0.23 0.61 16 4 C 0.11 1.14 5.62 -4.04 -0.02 1.12 16 5 N -0.63 -8.83 2.44 -179.43 -0.44 -9.27 16 6 C 0.14 1.95 5.15 -4.04 -0.02 1.93 16 7 C 0.04 0.51 5.28 -3.83 -0.02 0.49 16 8 N -0.54 -6.34 5.02 -251.26 -1.26 -7.61 16 9 C 0.03 0.27 9.57 60.06 0.57 0.84 16 10 C 0.02 0.20 9.32 60.07 0.56 0.76 16 11 C 0.69 13.08 8.11 -86.91 -0.71 12.38 16 12 O -0.57 -13.36 13.35 5.30 0.07 -13.29 16 13 N -0.67 -12.13 5.18 -14.10 -0.07 -12.20 16 14 C 0.01 0.25 6.30 -83.57 -0.53 -0.28 16 15 C -0.08 -2.16 8.61 -39.79 -0.34 -2.50 16 16 C -0.16 -4.27 8.64 -39.26 -0.34 -4.61 16 17 C 0.11 2.86 5.57 -106.80 -0.59 2.27 16 18 C -0.46 -12.42 9.03 -37.86 -0.34 -12.77 16 19 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 20 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 21 N -0.79 -21.23 10.97 55.54 0.61 -20.62 16 22 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 C -0.22 -5.31 9.74 -39.26 -0.38 -5.70 16 27 C -0.11 -2.36 9.90 -39.79 -0.39 -2.76 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.09 0.75 6.29 -51.93 -0.33 0.42 16 35 H 0.08 0.98 5.52 -51.93 -0.29 0.70 16 36 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 37 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 38 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.58 8.12 -51.92 -0.42 0.16 16 41 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 42 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 43 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 45 H 0.39 5.47 6.51 -40.82 -0.27 5.20 16 46 H 0.11 2.80 6.24 -52.48 -0.33 2.47 16 47 H 0.12 3.36 6.18 -52.49 -0.32 3.04 16 48 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 49 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 50 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -32.45 403.26 -9.81 -42.26 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.13 Total: 10.15 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.30 Total: -5.00 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -1.16 Total: -49.69 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.26 Total: -17.80 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.45 -9.81 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.196 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds